Team:Tuebingen/Downloads

DOWNLOADS

Educational Material

Flyer & Scripts

• Diabetes Type 2 & GMOs [english]
• High school students lab course script [german]
• Diabetes Type 2 & GMOs [german]

Presentation Slides

• High school students lab course presentation [german]
• High school students presentation [german]
• High school students presentation simplified [german]
• Panel discussion presentation CRISPR/Cas [german]

Lab Protocols

DNA Amplification & Assessment

• Protocol PCR
• Protocol Agarose Gelelectrophoresis

DNA Purification

• Protocol QIAprep® Spin Miniprep Kit
• Protocol QIAquick® Gel Extraction and PCR Purification Kit

RNA-Seq

• PureLink™ RNA Mini Kit
• RNA Clean & Concentrator™-5
• RNA Library Kits

Media & Stocks

• Protocol Glycerol Stock
• Protocol LB Medium LB Agar LB Agar Plates
• M9 mineral medium

Plasmid Editing and Insertion

• Protocol Restriction Digestion and Ligation
• Protocol Gibson Assembly
• Protocol Competent Cells
• Protocol Transformation

Good Lab Practice

• Good Lab Practice Guideline

Collaborations

Ethical analysis iGEM TAU

• Comments on our project
• Ethical Evaluation by Stefan Gammel

RNA-Seq Data

EMBL samples

• MultiQC report
• DESeq2 report
• GO/pathway analysis plots

Metabolic Models

E. coli Nissle

• Complete table of microbiome interaction results
• E. coli Nissle 1917 genome .faa file
• FBC-2 compatible model with medium
• Model as .xml file without medium
• Model as .json file without medium
• FBC-2 compatible model without medium

RNA-Seq Bacteria

• Bacteroides thetaiotaomicron
• Bifidobacterium adolescentis
• Clostridioides difficile
• Prevotella copri
• Ruminococcus gnavus

Nature Publication

• Source for this composition
• Anaerostipes hadrus
• Bacteroides caccae
• Bacteroides cellulosilyticus
• Bacteroides dorei
• Bacteroides ovatus
• Bacteroides uniformis
• Bacteroides vulgatus
• Bacteroides xylanisolvens
• Bifidobacterium adolescentis
• Bifidobacterium longum
• Blautia obeum
• Collinsella aerofaciens
• Dorea longicatena
• Escherichia coli
• Faecalibacterium prausnitzii
• Fusicatenibacter saccharivorans
• Parabacteroides distasonis
• Parabacteroides merdae
• Roseburia faecis

Textbook / Gutbacteria

• Source for this composition
• Bacteroides fragilis
• Bifidobacterium bifidum
• Clostridium perfringens
• Clostridium septicum
• Clostridium tetani
• Enterococcus faecalis
• Escherichia coli
• Lactobacillus reuteri
• Prevotella melaninogenica
• Prevotella oralis
• Salmonella enterica
• Staphylococcus aureus

---

---