Difference between revisions of "Team:Marburg/Collaborations"

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{{Marburg}}
 
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                   <figure style="text-align: center; margin-right: 1em;">
 
                   <figure style="text-align: center; margin-right: 1em;">
 
                     <img src=https://static.igem.org/mediawiki/2019/5/5e/T--marburg--colony_picking_2.jpeg
 
                     <img src=https://static.igem.org/mediawiki/2019/5/5e/T--marburg--colony_picking_2.jpeg
                       alt="Pipetting Robot, colony picking set up" style="min-width: 350px;">
+
                       alt="Pipetting Robot, colony picking set up"
 +
                      style="min-width: 350px;">
 
                     <figcaption>
 
                     <figcaption>
 
                       Figure 1: Pipetting Robot (OT-2) colony picking set up.
 
                       Figure 1: Pipetting Robot (OT-2) colony picking set up.
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                   <div>
 
                   <div>
 
                     <p style="margin-bottom: 1em;">
 
                     <p style="margin-bottom: 1em;">
                       In our colony picking collaboration we asked other iGEM teams to supply us with data for our picking algorithm.  
+
                       In our colony picking collaboration we asked other iGEM teams to supply us with data for our
 +
                      picking algorithm.
 
                       Thanks to this group effort we could build our colony picking unit.
 
                       Thanks to this group effort we could build our colony picking unit.
  
 
                     </p>
 
                     </p>
 
                     <p>
 
                     <p>
                    Many repetitive tasks in the lab cost time such as pipetting or picking colonies from agar plates and could technically be performed by robots.  
+
                      Many repetitive tasks in the lab cost time such as pipetting or picking colonies from agar plates
                    However, most commercially available Solutions are simply too expensive and therefore unavailable for manny Labs and iGEM Teams.
+
                      and could technically be performed by robots.
                    So one of our goals was to build a reasonable colony picking robot to outsource the tiring task of colony picking by hand.  
+
                      However, most commercially available Solutions are simply too expensive and therefore unavailable
 +
                      for manny Labs and iGEM Teams.
 +
                      So one of our goals was to build a reasonable colony picking robot to outsource the tiring task of
 +
                      colony picking by hand.
 
                     </p>
 
                     </p>
 
                     <p>
 
                     <p>
                      We used an Opentrons OT-2, the cheapest available pipetting Robot and constructed modules and scripts,  
+
                      We used an Opentrons OT-2, the cheapest available pipetting Robot and constructed modules and
                      that allow other iGEM Teams to turn their own OT-2 into a colony picking robot as well.  
+
                      scripts,
                      See here how to transfer your OT2 into a  
+
                      that allow other iGEM Teams to turn their own OT-2 into a colony picking robot as well.
                        <a style="padding: 0;"
+
                      See here how to transfer your OT2 into a
                            href="https://2019.igem.org/Team:Marburg/Colony_Picking"> Colony Picker
+
                      <a style="padding: 0;"
                          </a>.
+
                        href="https://2019.igem.org/Team:Marburg/Colony_Picking"> Colony Picker
 +
                      </a>.
  
 
                     </p>
 
                     </p>
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                 <div style="display: flex; flex-direction: row; margin-top: 1em;">
 
                 <div style="display: flex; flex-direction: row; margin-top: 1em;">
 
                   <p>
 
                   <p>
                     Following this, we created an instruction for other iGEM teams on how to take pictures of their agar plates with <i>E. coli</i> colonies which would be suitable as training data. Furthermore, we built a website so they could label the colonies on their pictures online.
+
                     Following this, we created an instruction for other iGEM teams on how to take pictures of their agar
 +
                    plates with <i>E. coli</i> colonies which would be suitable as training data. Furthermore, we built
 +
                    a website so they could label the colonies on their pictures online.
 
                   </p>
 
                   </p>
 
                   <figure style="text-align: center; margin-left: 1em;">
 
                   <figure style="text-align: center; margin-left: 1em;">
 
                     <img src="https://static.igem.org/mediawiki/2019/f/f8/T--marburg--taking_colony_pictures.png"
 
                     <img src="https://static.igem.org/mediawiki/2019/f/f8/T--marburg--taking_colony_pictures.png"
                       alt="Pattern for taking the colony picture" style="min-width: 500px;">
+
                       alt="Pattern for taking the colony picture"
 +
                      style="min-width: 500px;">
 
                     <figcaption>
 
                     <figcaption>
 
                       Figure 2: Pattern for taking the colony picture.
 
                       Figure 2: Pattern for taking the colony picture.
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                   <figure style="text-align: center; margin-right: 1em;">
 
                   <figure style="text-align: center; margin-right: 1em;">
 
                     <img src="https://static.igem.org/mediawiki/2019/0/0b/T--marburg--collonycollab_website.png"
 
                     <img src="https://static.igem.org/mediawiki/2019/0/0b/T--marburg--collonycollab_website.png"
                       alt="colony picking website" style="min-width: 550px;">
+
                       alt="colony picking website"
 +
                      style="min-width: 550px;">
 
                     <figcaption>
 
                     <figcaption>
 
                       Figure 3: Website for colony picutre labeling.
 
                       Figure 3: Website for colony picutre labeling.
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                     this collaboration, Doulix.
 
                     this collaboration, Doulix.
 
                   </p>
 
                   </p>
<div class="wrap-collabsible"
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style="margin-bottom: 25px;">
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                    style="margin-bottom: 25px;">
<input id="Pizzes"
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  class="toggle"
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                      class="toggle"
  type="checkbox">
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<label for="Pizzes"
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                    <label for="Pizzes"
  class="lbl-toggle">
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                      class="lbl-toggle">
  Participants and Prizes
+
                      Participants and Prizes
  <hr style="width: unset;">
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                      <hr style="width: unset;">
</label>
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                        style="text-align: left; text-align-last: left;">
                      <p style="margin-bottom: 25px;">
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                        <p style="margin-bottom: 25px;">
                        As an incentive to participate in this Collaboration we gave away prizes. The five best teams that send us pictures got an E. Coli soft toy and the three team that sent us the most pictures got a bigger surprise. Thanks to Doulix, we provided these three Teams with customized trophies and vouchers.  
+
                          As an incentive to participate in this Collaboration we gave away prizes. The five best teams
 +
                          that send us pictures got an E. Coli soft toy and the three team that sent us the most
 +
                          pictures got a bigger surprise. Thanks to Doulix, we provided these three Teams with
 +
                          customized trophies and vouchers.
  
                      </p>
+
                        </p>
<p>
+
                        <p>
Team <a style="padding: 0;"href="https://2019.igem.org/Team:BOKU-Vienna"> BOKU-Vienna </a> was able to send us one picture, Team <a style="padding: 0;"href="https://2019.igem.org/Team:GO_Paris-Saclay"> GO Paris-Saclay</a> provided 3 pictures and Team <a style="padding: 0;"href="https://2019.igem.org/Team:TUDelft"> TUDelft</a> could help us with 14 colonie pictures. Team <a style="padding: 0;"href="https://2019.igem.org/Team:TU_Darmstadt"> TU Darmstadt </a> could send us a number of 23 pictures, but were beaten by Team <a style="padding: 0;"href="https://2019.igem.org/Team:IISER_Bhopal"> IISER Bhopal </a> which send us an impressive amount of 99 pictures.
+
                          Team <a style="padding: 0;"
</p>
+
                            href="https://2019.igem.org/Team:BOKU-Vienna"> BOKU-Vienna </a> was able to send us one
<figure style="text-align: center; margin-right: 1em;">
+
                          picture, Team <a style="padding: 0;"
                    <img src=https://static.igem.org/mediawiki/2019/0/04/T--Marburg--prizes_colony-picture.jpeg
+
                            href="https://2019.igem.org/Team:GO_Paris-Saclay"> GO Paris-Saclay</a> provided 3 pictures
                      alt="Prizes colony picture">
+
                          and Team <a style="padding: 0;"
                    <figcaption>
+
                            href="https://2019.igem.org/Team:TUDelft"> TUDelft</a> could help us with 14 colonie
                      Figure 1: Giving out the prizes for the best participants of the Colony-Picture Project at the giant Jamboree.
+
                          pictures. Team <a style="padding: 0;"
                    </figcaption>
+
                            href="https://2019.igem.org/Team:TU_Darmstadt"> TU Darmstadt </a> could send us a number of
                  </figure>
+
                          23 pictures, but were beaten by Team <a style="padding: 0;"
<p>
+
                            href="https://2019.igem.org/Team:IISER_Bhopal"> IISER Bhopal </a> which send us an
We thank all the teams for sending us labeled colonie pictures. Without your help we would not have been able to train our AI and to let our opentrons OT-2 pick colonies.
+
                          impressive amount of 99 pictures.
</p>
+
                        </p>
  </div>
+
                        <figure style="text-align: center; margin-right: 1em;">
</div>
+
                          <img src=https://static.igem.org/mediawiki/2019/0/04/T--Marburg--prizes_colony-picture.jpeg
</div>
+
                            alt="Prizes colony picture">
 +
                          <figcaption>
 +
                            Figure 1: Giving out the prizes for the best participants of the Colony-Picture Project at
 +
                            the giant Jamboree.
 +
                          </figcaption>
 +
                        </figure>
 +
                        <p>
 +
                          We thank all the teams for sending us labeled colonie pictures. Without your help we would not
 +
                          have been able to train our AI and to let our opentrons OT-2 pick colonies.
 +
                        </p>
 +
                      </div>
 +
                    </div>
 +
                  </div>
  
  
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                 <figure style="float:right; margin-left: 25px;">
 
                 <figure style="float:right; margin-left: 25px;">
 
                   <img src="https://static.igem.org/mediawiki/2019/9/9b/T--marburg--berlin_logo_richtig.png"
 
                   <img src="https://static.igem.org/mediawiki/2019/9/9b/T--marburg--berlin_logo_richtig.png"
                     alt="Berlin logo" style="min-width: 500px;">
+
                     alt="Berlin logo"
 +
                    style="min-width: 500px;">
 
                 </figure>
 
                 </figure>
 
               </div>
 
               </div>
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                   <img src="https://static.igem.org/mediawiki/2019/4/49/T--marburg--UCD_OT2.jpeg"
 
                   <img src="https://static.igem.org/mediawiki/2019/4/49/T--marburg--UCD_OT2.jpeg"
 
                     alt="UCD OT2">
 
                     alt="UCD OT2">
<figcaption>
+
                  <figcaption>
                  Figure 1: OT-2 setup for the UC Davis collaboration
+
                    Figure 1: OT-2 setup for the UC Davis collaboration
                </figcaption>
+
                  </figcaption>
 
                 </figure>
 
                 </figure>
 
                 <div>
 
                 <div>
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                 <figure Style="text-align: center; margin-right: 25px;">
 
                 <figure Style="text-align: center; margin-right: 25px;">
 
                   <img src="https://static.igem.org/mediawiki/2019/b/b0/T--marburg--Mike_microbe.png"
 
                   <img src="https://static.igem.org/mediawiki/2019/b/b0/T--marburg--Mike_microbe.png"
                     alt=" Mike the Mircrobe" style="min-width: 300px;">
+
                     alt=" Mike the Mircrobe"
 +
                    style="min-width: 300px;">
 
                   <figcaption>
 
                   <figcaption>
 
                     Figure 1: Mike the mircrobe in our lab.
 
                     Figure 1: Mike the mircrobe in our lab.
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                 <figure style="text-align:center; margin-left: 25px;">
 
                 <figure style="text-align:center; margin-left: 25px;">
 
                   <img src="https://static.igem.org/mediawiki/2019/f/fe/T--marburg--Postcard.png"
 
                   <img src="https://static.igem.org/mediawiki/2019/f/fe/T--marburg--Postcard.png"
                     alt="Postcard challenge" style="min-width: 300px;">
+
                     alt="Postcard challenge"
 +
                    style="min-width: 300px;">
 
                   <figcaption>
 
                   <figcaption>
 
                     Figure 2: Our Postcard for the Postcard collaboration from Düsseldorf.
 
                     Figure 2: Our Postcard for the Postcard collaboration from Düsseldorf.
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                 <figure style="text-align:center; margin-right: 25px;">
 
                 <figure style="text-align:center; margin-right: 25px;">
 
                   <img src="https://static.igem.org/mediawiki/2019/1/18/T--marburg--SDG_chalenge.png"
 
                   <img src="https://static.igem.org/mediawiki/2019/1/18/T--marburg--SDG_chalenge.png"
                     alt="SGD Challenge" style="min-width: 300px;">
+
                     alt="SGD Challenge"
 +
                    style="min-width: 300px;">
 
                   <figcaption>
 
                   <figcaption>
 
                     Figure 3: SDG challenge.
 
                     Figure 3: SDG challenge.
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                 <figure style="text-align:center; margin-left: 25px;">
 
                 <figure style="text-align:center; margin-left: 25px;">
 
                   <img src="https://static.igem.org/mediawiki/2019/7/74/T--marburg--Labcoat_Burgi.jpeg"
 
                   <img src="https://static.igem.org/mediawiki/2019/7/74/T--marburg--Labcoat_Burgi.jpeg"
                     alt="labcoat" style="min-width: 300px;">
+
                     alt="labcoat"
 +
                    style="min-width: 300px;">
 
                   <figcaption>
 
                   <figcaption>
 
                     Figure 4: Our model Burgis for the labcoatchallenge.
 
                     Figure 4: Our model Burgis for the labcoatchallenge.
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                   friends and took the chance to talk about possible collaborations with the other teams and
 
                   friends and took the chance to talk about possible collaborations with the other teams and
 
                   also
 
                   also
                   promote our collaborations, such as the <a href="https://2019.igem.org/Team:Marburg/Collaborations#colony_pictures" target="_blank">colony picking project</a> and the <a href="https://2019.igem.org/Team:Marburg/Collaborations#golden_gate" target="_blank">Golden Gate webinar</a>. We would like to thank iGEM Team Erlangen very much for organizing this
+
                   promote our collaborations, such as the <a
 +
                    href="https://2019.igem.org/Team:Marburg/Collaborations#colony_pictures"
 +
                    target="_blank">colony picking project</a> and the <a
 +
                    href="https://2019.igem.org/Team:Marburg/Collaborations#golden_gate"
 +
                    target="_blank">Golden Gate webinar</a>. We would like to thank iGEM Team Erlangen very much for
 +
                  organizing this
 
                   wonderful meetup and are happy to see them soon in Boston.
 
                   wonderful meetup and are happy to see them soon in Boston.
 
                 </p>
 
                 </p>
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               <div style="display: flex; flex-direction: row;">
 
               <div style="display: flex; flex-direction: row;">
 
                 <p>
 
                 <p>
                   From 5th – 7th July we went to the HHU for the German meetup. Many lectures with interesting topics were offered by the Cluster of Exellence of Plant Science (<a href="https://www.ceplas.eu/en/home/" target="_blank">CEPLAS</a>)by Prof. Andreas Weber
+
                   From 5th – 7th July we went to the HHU for the German meetup. Many lectures with interesting topics
                   but also non-scientific aspects like coureses on presentations. We tried to visit all of
+
                  were offered by the Cluster of Exellence of Plant Science (<a href="https://www.ceplas.eu/en/home/"
 +
                    target="_blank">CEPLAS</a>)by Prof. Andreas Weber
 +
                   but also non-scientific aspects like coureses on presentations. We tried to visit all of
 
                   them
 
                   them
 
                   while presenting our poster in the hall. There we got in touch with other iGEM Teams also
 
                   while presenting our poster in the hall. There we got in touch with other iGEM Teams also
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               </h2>
 
               </h2>
 
               <div style="display: flex; flex-direction: row;">
 
               <div style="display: flex; flex-direction: row;">
             
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<figure style="text-align:center; margin-right: 25px">
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                <figure style="text-align:center; margin-right: 25px">
 
                   <img style="min-width: 300px;"
 
                   <img style="min-width: 300px;"
 
                     src="https://static.igem.org/mediawiki/2019/4/4e/T--Marburg--vilnius.jpg"
 
                     src="https://static.igem.org/mediawiki/2019/4/4e/T--Marburg--vilnius.jpg"
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                   </figcaption>
 
                   </figcaption>
 
                 </figure>
 
                 </figure>
<p>
+
                <p>
 
                   In August 2019 our Team participated in the Biohackathon Lab App, organized by the
 
                   In August 2019 our Team participated in the Biohackathon Lab App, organized by the
 
                   Vilnius-Lithuania Team 2019. Together with the iGEM Teams Stockholm and UCopenhagen, as
 
                   Vilnius-Lithuania Team 2019. Together with the iGEM Teams Stockholm and UCopenhagen, as
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{{Marburg/footer}}
 
{{Marburg/footer}}

Revision as of 18:44, 7 December 2019

C O L L A B O R A T I O N S


Through this iGEM year we interacted with so many iGEM Teams all around the world. It was a pleasure working with all the different teams and learn from each other. We got so many impressions about other projects and hope we could help with our collaborations. A huge Thank you for every team collaboration!


C O L O N Y
P I C T U R E S


In our colony picking collaboration we asked other iGEM teams to supply us with data for our picking algorithm. Thanks to this group effort we could build our colony picking unit.

T H EAG O L D E NAG A T E

C O L L A B O R A T I O N


Our team made itself the goal to introduce other iGEM Teams to Golden Gate. Therefore we hosted a webinar, build up a Communication Platform and made an Interlab.

B E R L I N


D E L F T


U CAD A V I S


U F L O R I D A


I N T E R A C T I O N S

W I T H

O T H E RAT E A M S


M E E T U P S