Difference between revisions of "Team:Marburg/Collaborations"

 
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                       In our colony picking collaboration we asked other iGEM teams to supply us with data for our
 
                       In our colony picking collaboration we asked other iGEM teams to supply us with data for our
 
                       picking algorithm.
 
                       picking algorithm.
                       Thanks to this group effort we could build our colony picking unit.</b>
+
                       Thanks to this group effort we could build our Colony Picking Unit.</b>
 
                     </p>
 
                     </p>
 
                    
 
                    
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                       Many repetitive tasks in the lab cost time such as pipetting or picking colonies from agar plates
 
                       Many repetitive tasks in the lab cost time such as pipetting or picking colonies from agar plates
 
                       and could technically be performed by robots.
 
                       and could technically be performed by robots.
                       However, most commercially available Solutions are simply too expensive and therefore unavailable
+
                       However, most commercially available solutions are simply too expensive and therefore unavailable
                       for manny Labs and iGEM Teams.
+
                       for many Labs and iGEM Teams.
 
                       So one of our goals was to build a reasonable colony picking robot to outsource the tiring task of
 
                       So one of our goals was to build a reasonable colony picking robot to outsource the tiring task of
 
                       colony picking by hand.
 
                       colony picking by hand.
 
                     </p>
 
                     </p>
 
                     <p>
 
                     <p>
                       We used an Opentrons OT-2, the cheapest available pipetting Robot and constructed modules and
+
                       We used an Opentrons OT-2, the cheapest available pipetting robot and constructed modules and
 
                       scripts,
 
                       scripts,
 
                       that allow other iGEM Teams to turn their own OT-2 into a colony picking robot as well.
 
                       that allow other iGEM Teams to turn their own OT-2 into a colony picking robot as well.
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                     The drawback for an AI approach is the amount of data it needs for precise and robust training.   
 
                     The drawback for an AI approach is the amount of data it needs for precise and robust training.   
 
                     With the help of the iGEM-community we thought to overcome this problem. We asked other iGEM Teams   
 
                     With the help of the iGEM-community we thought to overcome this problem. We asked other iGEM Teams   
                     if they could provide us with labeled pictures of their agar plates with  <i>E. coli</i> colonies, which serve as the  
+
                     if they could provide us with labeled pictures of their agar plates with  <i>E. coli</i> colonies, which served as the  
 
                     basis for our AI. For that purpose we set up a  
 
                     basis for our AI. For that purpose we set up a  
 
                         <a style="padding: 0;"
 
                         <a style="padding: 0;"
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                     criteria were evenly distributed, distinguishable colonies. The first step was taking the picture. For this
 
                     criteria were evenly distributed, distinguishable colonies. The first step was taking the picture. For this
 
                     purpose, the screen had to be set to the highest level of brightness and display a white image. When  
 
                     purpose, the screen had to be set to the highest level of brightness and display a white image. When  
                     you shoot a picture of a common screen, pattern on the picture could appear, so called moire pattern.  
+
                     you take a picture of a common screen, a pattern on the picture could appear, the so called Moiré pattern.  
                     To avoid this, we supplied each team with diffusion paper, which they can use to cover their screen.
+
                     To avoid this, we supplied each team with diffusive sheets, which they could use to cover their screen.
 
A detailed summary is found  <a style="padding: 0;"
 
A detailed summary is found  <a style="padding: 0;"
 
                         href="https://static.igem.org/mediawiki/2019/8/83/T--Marburg--Collaboration.pdf"> here.  
 
                         href="https://static.igem.org/mediawiki/2019/8/83/T--Marburg--Collaboration.pdf"> here.  
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                         As an incentive to participate in this Collaboration we gave away prizes. The five best teams
 
                         As an incentive to participate in this Collaboration we gave away prizes. The five best teams
 
                         that sent us pictures got an <i>E. coli</i> plushie and the three teams that sent us the most
 
                         that sent us pictures got an <i>E. coli</i> plushie and the three teams that sent us the most
                         pictures got a bigger surprise. Thanks to Doulix, we provided these three Teams with
+
                         pictures got a bigger surprise. Thanks to Doulix, we provided these three teams with
 
                         an engraved trophy out of glass and vouchers.  
 
                         an engraved trophy out of glass and vouchers.  
 
                
 
                
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                         Team <a style="padding: 0;"
 
                         Team <a style="padding: 0;"
 
                           href="https://2019.igem.org/Team:BOKU-Vienna"> BOKU-Vienna </a> was able to send us one
 
                           href="https://2019.igem.org/Team:BOKU-Vienna"> BOKU-Vienna </a> was able to send us one
                         picture, Team <a style="padding: 0;"
+
                         picture, team <a style="padding: 0;"
                           href="https://2019.igem.org/Team:GO_Paris-Saclay"> GO Paris-Saclay</a> provided 3 pictures
+
                           href="https://2019.igem.org/Team:GO_Paris-Saclay"> GO Paris-Saclay</a> provided three pictures
                         and Team <a style="padding: 0;"
+
                         and team <a style="padding: 0;"
                           href="https://2019.igem.org/Team:TUDelft"> TUDelft</a> could help us with 14 colonie
+
                           href="https://2019.igem.org/Team:TUDelft"> TUDelft</a> could help us with 14 colony
 
                         pictures. Team <a style="padding: 0;"
 
                         pictures. Team <a style="padding: 0;"
 
                           href="https://2019.igem.org/Team:TU_Darmstadt"> TU Darmstadt </a> could send us a number of
 
                           href="https://2019.igem.org/Team:TU_Darmstadt"> TU Darmstadt </a> could send us a number of
                         23 pictures, but were beaten by Team <a style="padding: 0;"
+
                         23 pictures, but were beaten by team <a style="padding: 0;"
 
                           href="https://2019.igem.org/Team:IISER_Bhopal"> IISER Bhopal </a> which send us an
 
                           href="https://2019.igem.org/Team:IISER_Bhopal"> IISER Bhopal </a> which send us an
 
                         impressive amount of 99 pictures.
 
                         impressive amount of 99 pictures.
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                       <p>
 
                       <p>
 
                         We thank all the teams for sending us labeled colony pictures. Without your help we would not
 
                         We thank all the teams for sending us labeled colony pictures. Without your help we would not
                         have been able to train our AI and to let our opentrons OT-2 pick colonies.
+
                         have been able to train our AI and to transform our Opentrons OT-2 into a Colony Picker.
 
                       </p>
 
                       </p>
 
                     </div>
 
                     </div>
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           onclick="popup('golden_gate')">
 
           onclick="popup('golden_gate')">
 
           <div class="sub-header">
 
           <div class="sub-header">
             <h1>T H E<span style="visibility: hidden;">A</span>G O L D E N<span style="visibility: hidden;">A</span>G A
+
             <h1>T H E &ensp; G O L D E N &ensp; G A
 
               T E</h1>
 
               T E</h1>
 
             <h1>C O L L A B O R A T I O N</h1>
 
             <h1>C O L L A B O R A T I O N</h1>
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                   <p><b>
 
                   <p><b>
 
                       Our team made itself the goal to introduce other iGEM Teams to Golden Gate.  
 
                       Our team made itself the goal to introduce other iGEM Teams to Golden Gate.  
                       Therefore we hosted a webinar, build up a Communication Platform
+
                       Therefore we hosted a webinar, build up a communication platform
                       and made an Interlab.</b>
+
                       and made an Interlab study.</b>
 
                     </p>
 
                     </p>
 
  <figure style="text-align: center; margin-left: 1em;">
 
  <figure style="text-align: center; margin-left: 1em;">
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                     class="lbl-toggle">
 
                     class="lbl-toggle">
 
                     Webinar - Educating about Golden Gate cloning
 
                     Webinar - Educating about Golden Gate cloning
 +
 +
 
                     <hr style="width: unset;">
 
                     <hr style="width: unset;">
 
                   </label>
 
                   </label>
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                       style="text-align: justify; text-align-last: left;">
 
                       style="text-align: justify; text-align-last: left;">
 
                       <div style="display: flex; flex-direction: row;">
 
                       <div style="display: flex; flex-direction: row;">
                         <figure style="text-align: center; margin-right: 25px;">
+
 
                           <img src="https://static.igem.org/mediawiki/2019/0/01/T--marburg--Webinar_button.png"
+
                         <figure style="text-align: center; margin-right: 25px; min-width:200px">
 +
                           <img src="https://static.igem.org/mediawiki/2019/3/37/T--Marburg--WebinarButton.svg"
 
                             alt="Webinarbutton">
 
                             alt="Webinarbutton">
 
                         </figure>
 
                         </figure>
 +
 
                         <p>
 
                         <p>
 
                           We wanted to reach as many teams as possible with our webinar on Golden Gate cloning,
 
                           We wanted to reach as many teams as possible with our webinar on Golden Gate cloning,
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                           biological function of the Type IIS enzymes and how they differ from Type II enzymes,
 
                           biological function of the Type IIS enzymes and how they differ from Type II enzymes,
 
                           over its applications in Synthetic Biology like modular cloning to the in-depth
 
                           over its applications in Synthetic Biology like modular cloning to the in-depth
                           strategies when designing your own parts and actually building them in the lab.<br>
+
                           strategies when designing your own parts and actually building them in the lab.<br> <br>
 +
                        </p>
 +
                        </div>
 +
                        <p>
 
                           During this planning step we realized, that some of the teams that are already working
 
                           During this planning step we realized, that some of the teams that are already working
 
                           with Golden Gate might not benefit as much from an entry level webinar. Consequently, we
 
                           with Golden Gate might not benefit as much from an entry level webinar. Consequently, we
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                           teams that use Golden Gate themselves, showing them the possibilities this cloning
 
                           teams that use Golden Gate themselves, showing them the possibilities this cloning
 
                           system offers.<br>
 
                           system offers.<br>
 +
 +
                        </p>
 +
                        <div style="display: flex; flex-direction: row; margin-top: 25px">
 +
                   
 +
                          <p>
 
                           To reach as many teams on the globe as possible we set up webinars on three different
 
                           To reach as many teams on the globe as possible we set up webinars on three different
 
                           times to cover as many time zones within a comfortable time frame – hoping that this
 
                           times to cover as many time zones within a comfortable time frame – hoping that this
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                           Gate which he was not aware of before!
 
                           Gate which he was not aware of before!
 
                         </p>
 
                         </p>
 +
                        <figure style="text-align: center; margin-left: 25px; min-width:400px">
 +
                          <img src="https://static.igem.org/mediawiki/2019/f/f1/T--marburg--Doulix_webinar.jpeg"
 +
                            alt="Bilder Webinar"
 +
                            style="max-height: 600px;">
 +
                          <figcaption>
 +
                            Figure 3: Participants watching our Golden Gate webinar all over the world.
 +
                          </figcaption>
 +
                        </figure>
 
                       </div>
 
                       </div>
 +
 +
                       
 +
 
                       <div style="display: flex; flex-direction: row; margin-top: 25px">
 
                       <div style="display: flex; flex-direction: row; margin-top: 25px">
 
                         <div>
 
                         <div>
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                             </ul>
 
                             </ul>
 
                           </div>
 
                           </div>
 +
<p>
 
                           We thank all the following teams for participating in this awesome event:
 
                           We thank all the following teams for participating in this awesome event:
 +
</p>
 
                           <div class="content">
 
                           <div class="content">
 
                             <ul>
 
                             <ul>
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                             </ul>
 
                             </ul>
 
                           </div>
 
                           </div>
                        </div>
+
                   
                        <figure style="text-align: center; margin-left: 25px;">
+
                          <img src="https://static.igem.org/mediawiki/2019/f/f1/T--marburg--Doulix_webinar.jpeg"
+
                            alt="Bilder Webinar"
+
                            style="max-height: 600px;">
+
                          <figcaption>
+
                            Figure 3: Participants watching our Golden Gate webinar all over the world.
+
                          </figcaption>
+
                        </figure>
+
 
                       </div>
 
                       </div>
 
                     </div>
 
                     </div>
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                     <div class="content-inner"
 
                     <div class="content-inner"
 
                       style="text-align: left; text-align-last: left;">
 
                       style="text-align: left; text-align-last: left;">
 +
 +
 +
  <div style="display: flex; flex-direction: row;">
 +
 +
                        <figure style="text-align: center; margin-right: 25px; min-width:200px">
 +
                          <img src="https://static.igem.org/mediawiki/2019/3/30/T--Marburg--GoldenGateCommunicationButton.svg"
 +
                            alt="GoldenGateCommunicationButton">
 +
                        </figure>
 +
 
                       <p style="margin-bottom: 25px;">
 
                       <p style="margin-bottom: 25px;">
 
                         Although we were quite pleased with the result of our webinar, we thought about how to
 
                         Although we were quite pleased with the result of our webinar, we thought about how to
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                         troubleshoot issues that might arise. So far there are close to 50 members, but we hope
 
                         troubleshoot issues that might arise. So far there are close to 50 members, but we hope
 
                         to find more enthusiasts willing to share their knowledge!<br>
 
                         to find more enthusiasts willing to share their knowledge!<br>
                        All files used for the webinar are openly available. You can find our protocols,
+
</p>
 +
</div>
 +
</div>
 +
                     
 +
<p style="margin-bottom: 25px;">
 +
All files used for the webinar are openly available. You can find our protocols,
 
                         handouts, slides as well as the files we used for the practical part in Geneious to
 
                         handouts, slides as well as the files we used for the practical part in Geneious to
 
                         construct parts in-silico in our shared Google Drive. Through this we hope to make it
 
                         construct parts in-silico in our shared Google Drive. Through this we hope to make it
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                           As we are constantly working on improving the efficiency of Golden Gate. We clearly
 
                           As we are constantly working on improving the efficiency of Golden Gate. We clearly
 
                           saw the main bottleneck of the reaction was the long assembly time in the cycler.
 
                           saw the main bottleneck of the reaction was the long assembly time in the cycler.
                           In the webinar and in ourGolden Gate community weprovided protocols with three different
+
                           In the webinar and in our Golden Gate community we provided protocols with three different
 
                           cycler settings for different applications.
 
                           cycler settings for different applications.
                           Although these threeprotocols were tested before, they were never compared to each other in
+
                           Although these three protocols were tested before, they were never compared to each other in
 
                           their efficiency.<br>
 
                           their efficiency.<br>
 
                           We conducted our own Interlab study in collaboration with the iGEM Teams from
 
                           We conducted our own Interlab study in collaboration with the iGEM Teams from
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                           In order to find the best protocol, we supplied the teams with specific Level 0
 
                           In order to find the best protocol, we supplied the teams with specific Level 0
 
                           parts,that should be assembled to a Level 1 vector using the three different cycler
 
                           parts,that should be assembled to a Level 1 vector using the three different cycler
                           conditions. The provided parts areshown in the table
+
                           conditions. The provided parts are shown in the table
 
                         </p>
 
                         </p>
 
                         <div style="display: flex; flex-direction: column; margin-left: 25px;">
 
                         <div style="display: flex; flex-direction: column; margin-left: 25px;">
 
                           <figure style="float:left;">
 
                           <figure style="float:left;">
                             <img src="https://static.igem.org/mediawiki/2019/7/79/T--marburg--interlab_button.svg"
+
                             <img src="https://static.igem.org/mediawiki/2019/c/c9/T--Marburg--InterlabButton.svg"
 
                               alt="Interlab button"
 
                               alt="Interlab button"
 
                               style="max-height: 200px;">
 
                               style="max-height: 200px;">
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  <div style="display: flex; flex-direction: row;">
 
  <div style="display: flex; flex-direction: row;">
  
                           <p> First we wanted to know which protocol worked best for every team. For this we analysed the data of the correct assembled green colonies for every protocol. The data of the different teams are given in table 1 and are shown in as chart in Figure 2. The total colony count is hard to compare directly, cause the numbers differ very much between the teams. This could come through the different transformation efficiencies for example because of the variating competent cells the teams used. </p>
+
                           <p> First we wanted to know which protocol worked best for every team. For this we analysed the data of the correct assembled green colonies for every protocol. The data of the different teams are given in Table 1 and are shown in as chart in Figure 2. The total colony count is hard to compare directly, cause the numbers differ very much between the teams. This could come through the different transformation efficiencies for example because of the variating competent cells the teams used. </p>
  
 +
                           
 +
 +
                          <figure style="text-align: center; margin-left: 25px; min-width:500px">
 
                             <figcaption style="max-width: 500px; text-align: center">
 
                             <figcaption style="max-width: 500px; text-align: center">
 
                             Table 1 - Data for the gained green colonies gained by using the three different protocols, from each participating team.
 
                             Table 1 - Data for the gained green colonies gained by using the three different protocols, from each participating team.
 
                             </figcaption>
 
                             </figcaption>
 
+
<img
                          <figure style="text-align: center; margin-right: 25px">
+
                            <img style="height: 250px; width: 500px;"
+
 
                               src="https://static.igem.org/mediawiki/2019/4/4a/T--Marburg--Tabelle_Interlab.png"
 
                               src="https://static.igem.org/mediawiki/2019/4/4a/T--Marburg--Tabelle_Interlab.png"
 
                               alt="Table 1 - Data for the gained green colonies gained by using the three different protocols, from each participating team">
 
                               alt="Table 1 - Data for the gained green colonies gained by using the three different protocols, from each participating team">
Line 560: Line 592:
 
                           </figure>
 
                           </figure>
  
      <br>
+
  <p>
                           The results in Figure 2 show, that the protocols work differently for each teams. In generell the most colonies were  
+
    <br>
 +
                           The results in Figure 2 show, that the protocols work differently for each team. In general the most colonies were  
 
                           received with the long Troubleshoot protocol, but also the Rapid and Improved protocols show high numbers of correct colonies.
 
                           received with the long Troubleshoot protocol, but also the Rapid and Improved protocols show high numbers of correct colonies.
 
                           <br>
 
                           <br>
Line 567: Line 600:
 
                           To compare the results of the teams the ratio of the gained correct colonies between the
 
                           To compare the results of the teams the ratio of the gained correct colonies between the
 
                           protocols were averaged. The data are shown in Figure 3 and show, that the long Troubleshoot
 
                           protocols were averaged. The data are shown in Figure 3 and show, that the long Troubleshoot
                           assembly works the best. The fastest assembly (rapid) works the second best. This is very
+
                           assembly works the best. The fastest assembly (Rapid) works the second best. This is very
 
                           interesting, because this assembly takes significant less time.<br>
 
                           interesting, because this assembly takes significant less time.<br>
 
                           <br>
 
                           <br>
                           We would propose to take the troubleshoot protocol for complicated assemblies and the rapid
+
                           We would propose to take the Troubleshoot protocol for complicated assemblies and the rapid
                           protocol for easy assemblies like lvl0.<br>
+
                           protocol for easy assemblies like lvl 0.<br>
 +
</p>
 
                           <figure style="text-align:center">
 
                           <figure style="text-align:center">
 
                             <img style="height: 400px; width: 500px;"
 
                             <img style="height: 400px; width: 500px;"
Line 693: Line 727:
 
           <div class="sub-header">
 
           <div class="sub-header">
 
             <h1>
 
             <h1>
               U C<span style="visibility: hidden;">A</span>D A V I S
+
               U C &ensp; D A V I S
 
             </h1>
 
             </h1>
 
             <hr>
 
             <hr>
Line 713: Line 747:
 
             <div class="popup-content">
 
             <div class="popup-content">
 
               <div style="display: flex; flex-direction: row;">
 
               <div style="display: flex; flex-direction: row;">
                <figure Style="float:left; margin-right: 25px;">
+
         
                  <img src="https://static.igem.org/mediawiki/2019/4/49/T--marburg--UCD_OT2.jpeg"
+
                    alt="UCD OT2">
+
                  <figcaption>
+
                    Figure 1: OT-2 setup for the UC Davis collaboration
+
                  </figcaption>
+
                </figure>
+
 
                 <div>
 
                 <div>
 
                   <p style="margin-bottom: 25px;">
 
                   <p style="margin-bottom: 25px;">
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                     exchange in the future.
 
                     exchange in the future.
 
                   </p>
 
                   </p>
 +
<center><figure Style="text-align:center">
 +
                        <!-- add this for centered pics-->
 +
                        <img src="https://static.igem.org/mediawiki/2019/4/49/T--marburg--UCD_OT2.jpeg" width="450" height="300"
 +
                    alt="UCD OT2">
 +
                        <figcaption>
 +
                            Figure 1: OT-2 setup for the UC Davis collaboration
 +
                        </figcaption>
 +
                        </figure></center>
 
                   <p>
 
                   <p>
 
                     In total, seven teams participated and sent their data to UC Davis which are
 
                     In total, seven teams participated and sent their data to UC Davis which are
Line 766: Line 802:
 
                     using the
 
                     using the
 
                     r2 metric (it ranges from 0 to 1 with higher value indicates a better fit).
 
                     r2 metric (it ranges from 0 to 1 with higher value indicates a better fit).
                     <br>
+
                     <br><br>
                     For the fluorescence the r2 value from the OT2 data beats human r2 value with
+
                     For the fluorescence the r2 value from the OT2 data beat human r2 value with
 
                     0.94 and 0.90,
 
                     0.94 and 0.90,
 
                     respectively.
 
                     respectively.
Line 786: Line 822:
 
                     2b, one team’s
 
                     2b, one team’s
 
                     result
 
                     result
                     deviates a lot from the rest of the teams, maybe if their result is taken from
+
                     deviates a lot from the rest of the teams, maybe if their result is taken out from
 
                     the overall
 
                     the overall
 
                     evaluation a more
 
                     evaluation a more
 
                     comparable
 
                     comparable
                     result between OT-2 and human can be observed.
+
                     result between OT-2 and human could be observed.
 
                   </p>
 
                   </p>
 
                 </div>
 
                 </div>
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               <p style="margin-top: 25px;">
 
               <p style="margin-top: 25px;">
 
                 More information about this collaboration such as individual team data can be
 
                 More information about this collaboration such as individual team data can be
                 found on UC
+
                 found on <a href="https://2019.igem.org/Team:UC_Davis/Collaborations"> UC Davis wiki.
                Davis wiki:
+
                   </a>
                <a href="https://2019.igem.org/Team:UC_Davis/Collaborations"> Wiki UC Davis
+
               
                   Collaboration </a>
+
 
               </p>
 
               </p>
 
               <figure style="text-align: center; margin-top: 25px;">
 
               <figure style="text-align: center; margin-top: 25px;">
                 <img style="max-height: 300px"
+
                 <img style="max-height: 450px"
 
                   src="https://static.igem.org/mediawiki/2019/c/cc/T--marburg--UC_Davis_Graphic_1.png"
 
                   src="https://static.igem.org/mediawiki/2019/c/cc/T--marburg--UC_Davis_Graphic_1.png"
 
                   alt=" UCD Graphic 1">
 
                   alt=" UCD Graphic 1">
                 <img style="max-height: 300px"
+
                 <img style="max-height: 450px"
 
                   src=" https://static.igem.org/mediawiki/2019/a/a7/T--marburg--UC_Davis_Graphic_2.png"
 
                   src=" https://static.igem.org/mediawiki/2019/a/a7/T--marburg--UC_Davis_Graphic_2.png"
 
                   alt=" UC Davis Graphic 2">
 
                   alt=" UC Davis Graphic 2">
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                 <p>
 
                 <p>
 
                   This semester we had the pleasure of mentoring UFlorida for their Wiki
 
                   This semester we had the pleasure of mentoring UFlorida for their Wiki
                   design. Our member, Rene Inckemann, aided UFlorida in their quest to create
+
                   design. Our member, René Inckemann, aided UFlorida in their quest to create
 
                   a visually accessible Wiki, similar to what we did this past iGEM season.
 
                   a visually accessible Wiki, similar to what we did this past iGEM season.
 
                   We helped shape UFlorida’s website into an interactive and appealing
 
                   We helped shape UFlorida’s website into an interactive and appealing
Line 860: Line 895:
 
                   offered valuable information about when to start working on the Wiki and
 
                   offered valuable information about when to start working on the Wiki and
 
                   questions about coding. Working with a young team like UFlorida offered us
 
                   questions about coding. Working with a young team like UFlorida offered us
                   a great mentorship opportunity.
+
                   a great mentorship opportunity.  
 +
 
 +
<a style="padding: 0;"
 +
                        href="https://2019.igem.org/Team:Florida/Collaborations"> Click here to learn more about there project.
 +
                      </a>
 +
 
 +
 
 
                 </p>
 
                 </p>
 
               </div>
 
               </div>
Line 878: Line 919:
 
             <h1>I N T E R A C T I O N S</h1>
 
             <h1>I N T E R A C T I O N S</h1>
 
             <h1>W I T H</h1>
 
             <h1>W I T H</h1>
             <h1>O T H E R<span style="visibility: hidden;">A</span>T E A M S</h1>
+
             <h1>O T H E R &ensp; T E A M S</h1>
 
             <hr>
 
             <hr>
 
           </div>
 
           </div>
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                 <figure style="text-align:center; margin-right: 25px;">
 
                 <figure style="text-align:center; margin-right: 25px;">
 
                   <img src="https://static.igem.org/mediawiki/2019/1/18/T--marburg--SDG_chalenge.png"
 
                   <img src="https://static.igem.org/mediawiki/2019/1/18/T--marburg--SDG_chalenge.png"
                     alt="SGD Challenge"
+
                     alt="SGD Challenge - 7 12 13 15"
 
                     style="min-width: 300px;">
 
                     style="min-width: 300px;">
 
                   <figcaption>
 
                   <figcaption>
Line 966: Line 1,007:
 
                   We
 
                   We
 
                   joined this
 
                   joined this
                   collaboration challenge and spread it on our social media account. We decided on the
+
                   collaboration challenge and spread it on our social media account. Our project targets the
                  following
+
                   goals shown in Figure 3.
                   goals:
+
 
                 </p>
 
                 </p>
 
               </div>
 
               </div>
Line 991: Line 1,031:
 
                   to the
 
                   to the
 
                   daily routine in the labs. Especially our guys were rocking their outfits as you can see
 
                   daily routine in the labs. Especially our guys were rocking their outfits as you can see
                   here
+
                   in Figure 4.
 
                 </p>
 
                 </p>
 
                 <figure style="text-align:center; margin-left: 25px;">
 
                 <figure style="text-align:center; margin-left: 25px;">
 
                   <img src="https://static.igem.org/mediawiki/2019/7/74/T--marburg--Labcoat_Burgi.jpeg"
 
                   <img src="https://static.igem.org/mediawiki/2019/7/74/T--marburg--Labcoat_Burgi.jpeg"
                     alt="labcoat"
+
                     alt="Our model Burgis for the labcoatchallenge"
 
                     style="min-width: 300px;">
 
                     style="min-width: 300px;">
 
                   <figcaption>
 
                   <figcaption>
Line 1,028: Line 1,068:
 
               <div style="display: flex; flex-direction: row;">
 
               <div style="display: flex; flex-direction: row;">
 
                 <p>
 
                 <p>
                   From 3rd 5th Mai we met our iGEM colleagues for the Spring Festival in Bonn. Professors
+
                   From the 3rd to the 5th Mai we met other iGEMers at the Spring Festival in Bonn. Professors
                   of
+
                   of the university of Bonn presented their research fields which was met with huge interest. We heard
                  the
+
                  university of Bonn presented their research fields which was met with huge interest. We heard
+
 
                   lectures
 
                   lectures
 
                   about immunology and neurosciences, as well as reviving mammoths. During the lectures,
 
                   about immunology and neurosciences, as well as reviving mammoths. During the lectures,
Line 1,049: Line 1,087:
 
                   little football table tournament, where two of our team members won. In the evening we
 
                   little football table tournament, where two of our team members won. In the evening we
 
                   learnt a
 
                   learnt a
                   lot about Bonn as a city from a guide living there for ages. Subsequently, the iGEM Teams
+
                   lot about Bonn as a city from a guide living there for many years. Subsequently, the iGEM Teams
 
                   met
 
                   met
 
                   in
 
                   in
Line 1,060: Line 1,098:
 
                   escape room and finished a lab challenge afterwards. Our team could compete until the end
 
                   escape room and finished a lab challenge afterwards. Our team could compete until the end
 
                   and
 
                   and
                   won the prize! Thanks again to Doulix for this awesome prize!<br>
+
                   won the prize! Thanks again to Doulix for this awesome prize! <br>
 
                   We particularly thank the iGEM Team Bonn for the huge effort and the great meetup!
 
                   We particularly thank the iGEM Team Bonn for the huge effort and the great meetup!
 
                 </p>
 
                 </p>
Line 1,086: Line 1,124:
 
                 </figure>
 
                 </figure>
 
                 <p>
 
                 <p>
                   On the 17th 19th of May we attended the collaboration meetup hosted by the iGEM Team
+
                   On the 17th till the 19th of May we attended the collaboration meetup hosted by the iGEM team
 
                   Erlangen
 
                   Erlangen
 
                   2019. There, we met the iGEM teams of Straßbourg, Tübingen, Vienna and of course Erlangen.
 
                   2019. There, we met the iGEM teams of Straßbourg, Tübingen, Vienna and of course Erlangen.
Line 1,099: Line 1,137:
 
                     target="_blank">colony picking project</a> and the <a
 
                     target="_blank">colony picking project</a> and the <a
 
                     href="https://2019.igem.org/Team:Marburg/Collaborations#golden_gate"
 
                     href="https://2019.igem.org/Team:Marburg/Collaborations#golden_gate"
                     target="_blank">Golden Gate webinar</a>. We would like to thank iGEM Team Erlangen very much for
+
                     target="_blank">Golden Gate webinar</a>. We would like to thank iGEM team Erlangen very much for
 
                   organizing this
 
                   organizing this
                   wonderful meetup and are happy to see them soon in Boston.
+
                   wonderful meetup!
 
                 </p>
 
                 </p>
 
               </div>
 
               </div>
Line 1,108: Line 1,146:
 
               <div style="display: flex; flex-direction: row;">
 
               <div style="display: flex; flex-direction: row;">
 
                 <p>
 
                 <p>
                   From 5th 7th July we went to the HHU for the German meetup. Many lectures with interesting topics
+
                   From the 5th till the 7th July we went to the HHU for the German meetup. Many lectures with interesting topics
 
                   were offered by the Cluster of Exellence of Plant Science (<a href="https://www.ceplas.eu/en/home/"
 
                   were offered by the Cluster of Exellence of Plant Science (<a href="https://www.ceplas.eu/en/home/"
                     target="_blank">CEPLAS</a>)by Prof. Andreas Weber
+
                     target="_blank">CEPLAS</a>) by Prof. Andreas Weber
                   but also non-scientific aspects like coureses on presentations. We tried to visit all of
+
                   but also non-scientific aspects like courses on presentations. We tried to visit all of
 
                   them
 
                   them
                   while presenting our poster in the hall. There we got in touch with other iGEM Teams also
+
                   while presenting our poster in the hall. There we got in touch with other iGEM Teams and also
 
                   learnt
 
                   learnt
 
                   about their projects. We promoted our Webinar project and laid the foundation stone for
 
                   about their projects. We promoted our Webinar project and laid the foundation stone for
Line 1,130: Line 1,168:
 
                   iGEMers
 
                   iGEMers
 
                   in a pub and talk about the projects, especially to find weaknesses or opportunities for
 
                   in a pub and talk about the projects, especially to find weaknesses or opportunities for
                   collaborations. This really went successfully due to the time we spend with iGEM Team
+
                   collaborations. This really went successfully due to the time we spend with iGEM Team Aachen, Kaiserslautern and Hamburg. The iGEM Team Düsseldorf also arranged a game contest between the teams,
                  Aachen
+
                  and
+
                  Kaiserslautern. The iGEM Team Düsseldorf also arranged a game contest between the teams,
+
 
                   where
 
                   where
 
                   we lost in the final to our good friends from Potsdam. Congrats! <br>
 
                   we lost in the final to our good friends from Potsdam. Congrats! <br>
Line 1,199: Line 1,234:
 
                   would continue with this project later on!
 
                   would continue with this project later on!
 
                   <br>In conclusion, the Biohackathon was an awesome and productive meeting of the iGEM
 
                   <br>In conclusion, the Biohackathon was an awesome and productive meeting of the iGEM
                   Teams
+
                   teams
 
                   Stockholm, Copenhagen, Vilnius and Marburg. We talked about our projects, offered each
 
                   Stockholm, Copenhagen, Vilnius and Marburg. We talked about our projects, offered each
 
                   other
 
                   other
Line 1,205: Line 1,240:
 
                   We are very grateful that we got the opportunity to meet so many experts from different
 
                   We are very grateful that we got the opportunity to meet so many experts from different
 
                   fields,
 
                   fields,
                   which really helped getting a fresh perspective on our project and are now looking forward
+
                   which really helped getting a fresh perspective on our project!
                  to
+
                  meet
+
                  the other teams again at the Giant Jamboree!
+
 
                 </p>
 
                 </p>
 
               </div>
 
               </div>

Latest revision as of 06:45, 9 December 2019

C O L L A B O R A T I O N S


Through this iGEM year we interacted with many iGEM Teams all around the world. It was a pleasure working with all the different teams and learn from each other. We got many impressions about other projects and we hope that we could help with our collaborations. We would like to thank every team that collaborated with us!


C O L O N Y
P I C T U R E S


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