Difference between revisions of "Team:Marburg/Collaborations"

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                       Many repetitive tasks in the lab cost time such as pipetting or picking colonies from agar plates
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                       In our colony picking collaboration we asked other iGEM teams to supply us with data for our picking algorithm.  
                      and could technically be performed by robots. We used Opentrons OT-2 as a platform and designed
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                       Thanks to this group effort we could build our colony picking unit.
                       hardware modules and scripts to outsource these tasks. Thereby, we can now offer the Opentrons
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                      user community an automated pipeline to streamline laboratory practices in ways that haven’t been
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                      possible before.
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                      For the software we decided to use an artificial intelligence (AI). Artificial intelligences
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                    Many repetitive tasks in the lab cost time such as pipetting or picking colonies from agar plates and could technically be performed by robots.  
                      however rely on huge data sets to learn their specific task to perfection. In our case, we chose
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                    However, most commercially available Solutions are simply too expensive and therefore unavailable for manny Labs and iGEM Teams.
                      pictures of agar plates with colonies of E. coli as a suitable training set. Our experiments
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                    So one of our goals was to build a reasonable colony picking robot to outsource the tiring task of colony picking by hand.
                      resulted in a big amount of agar plates but it was clear to us pretty quickly that we could never
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                      reach a big enough data set just by making photos of our own plates to get an AI with an adequate
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                      performance. To achieve this goal, we launched the Colony picture collaboration. We asked other
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                      We used an Opentrons OT-2, the cheapest available pipetting Robot and constructed modules and scripts,
                      iGEM Teams if they could provide us pictures of their agar plates with E. coli colonies with which
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                      that allow other iGEM Teams to turn their own OT-2 into a colony picking robot as well.  
                      we can then train the robot. In order to do that we published a script on how to take the ictures.
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                      See here how to transfer your OT2 into a  
                      We made the script as precise as possible to make sure that the data set was as consistent as
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                        <a style="padding: 0;"
                      possible.
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                            href="https://2019.igem.org/Team:Marburg/Colony_Picking"> Colony Picker
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                          </a>.
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Revision as of 15:38, 7 December 2019

C O L L A B O R A T I O N S


Through this iGEM year we interacted with so many iGEM Teams all around the world. It was a pleasure working with all the different teams and learn from each other. We got so many impressions about other projects and hope we could help with our collaborations. A huge Thank you for every team collaboration!


C O L O N Y
P I C T U R E S


In our colony picking collaboration we asked other iGEM teams to supply us with data for our picking algorithm. Thanks to this group effort we could build our colony picking unit.

T H EAG O L D E NAG A T E

C O L L A B O R A T I O N


Our team made itself the goal to introduce other iGEM Teams to Golden Gate. Therefore we hosted a webinar, build up a Communication Platform and made an Interlab.

B E R L I N


D E L F T


U CAD A V I S


U F L O R I D A


I N T E R A C T I O N S

W I T H

O T H E RAT E A M S


M E E T U P S