Difference between revisions of "Team:Marburg/Collaborations"

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                    Slack Channel and gDrive - Global networking in the Golden Gate community
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                  <h3 class="title">Slack Channel and gDrive - Global networking in the Golden Gate community</h3>
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                       <p>
 
                       <p>
 
                         Although we were quite pleased with the result of our webinar, we thought about how to
 
                         Although we were quite pleased with the result of our webinar, we thought about how to
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                <div class="wrap-collabsible" style="margin-bottom: 25px;">
              <!--hier interlab hin-->
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                    Slack Channel and gDrive - Global networking in the Golden Gate community
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                  <h3 class="title">Slack Channel and gDrive - Global networking in the Golden Gate community</h3>
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                       <h3>Interlab - Accelerate Golden Gate Assembly</h3>
                    <div>
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                      <figure Style="float:left; margin-left: 25px;">
                       <p>
+
                        <img style="height: 50ex; width: 40ex"
                        <h4>Interlab - Accelerate Golden Gate Assembly</h4>
+
                          src="  https://static.igem.org/mediawiki/2019/7/79/T--marburg--interlab_button.svg"
                        <p>
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                          alt="Interlab button">
                          <figure Style="float:left; margin-left: 25px;">
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                      </figure>
                            <img style="height: 50ex; width: 40ex"
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                      <br> <br>
                              src="  https://static.igem.org/mediawiki/2019/7/79/T--marburg--interlab_button.svg"
+
                      Interlab - Accelerate Golden Gate Assembly
                              alt="Interlab button">
+
                      As we are constantly working on improving the efficiency of Golden Gate. We clearly
                          </figure>
+
                      saw the main bottleneck of the reaction was the long assembly time in the cycler.
                          <br> <br>
+
                      In the webinar and in ourGolden Gate community weprovided protocols with three different
                          Interlab - Accelerate Golden Gate Assembly
+
                      cycler settings for different applications.
                          As we are constantly working on improving the efficiency of Golden Gate. We clearly
+
                      Although these threeprotocols were tested before, they were never compared to each other in
                          saw the main bottleneck of the reaction was the long assembly time in the cycler.
+
                      their
                          In the webinar and in ourGolden Gate community weprovided protocols with three different
+
                      efficiency.<br>
                          cycler settings for different applications.
+
                      We conducted our own Interlab study in collaboration with the iGEM Teams from
                          Although these threeprotocols were tested before, they were never compared to each other in
+
                      <a href="https://2019.igem.org/Team:TUDelft"> TUDelft </a>,
                          their
+
                      <a href="https://2019.igem.org/Team:Humboldt_Berlin"> HUmboldt Berlin </a> and
                          efficiency.<br>
+
                      <a href="https://2019.igem.org/Team:TU_Kaiserslautern"> TU Kaiserslautern </a>
                          We conducted our own Interlab study in collaboration with the iGEM Teams from
+
                      In order to find the best protocol, we supplied the teams with specific Level 0
                          <a href="https://2019.igem.org/Team:TUDelft"> TUDelft </a>,
+
                      parts,that should be assembled to a Level 1 vector using the three different cycler
                          <a href="https://2019.igem.org/Team:Humboldt_Berlin"> HUmboldt Berlin </a> and
+
                      conditions.
                          <a href="https://2019.igem.org/Team:TU_Kaiserslautern"> TU Kaiserslautern </a>
+
                      The provided parts areshown in this table:
                          In order to find the best protocol, we supplied the teams with specific Level 0
+
                      <br> <br>
                          parts,that should be assembled to a Level 1 vector using the three different cycler
+
                      <table>
                          conditions.
+
                        <tbody>
                          The provided parts areshown in this table:
+
                          <tr>
                          <br> <br> <!-- Tabelle Links noch rein -->
+
                            <td style="text-align: center">5' Connector </td>
                          <table>
+
                            <td style="text-align: center"> <a href="link 1"> BBa_K2560075 </a>/
                            <tbody>
+
                          </tr>
                              <tr>
+
                          <tr>
                                <td style="text-align: center">5' Connector </td>
+
                            <td style="text-align: center">Promoter </td>
                                <td style="text-align: center"> <a href="link 1"> BBa_K2560075 </a>/
+
                            <td style="text-align: center"> <a href="link 2"> J23119 BBa_K2560031 </a>
                              </tr>
+
                          </tr>
                              <tr>
+
                          <tr>
                                <td style="text-align: center">Promoter </td>
+
                            <td style="text-align: center">RBS </td>
                                <td style="text-align: center"> <a href="link 2"> J23119 BBa_K2560031 </a>
+
                            <td style="text-align: center"> <a href="link 2"> B0034 BBa_K2560008 </a>
                              </tr>
+
                          </tr>
                              <tr>
+
                          <tr>
                                <td style="text-align: center">RBS </td>
+
                            <td style="text-align: center">CDS </td>
                                <td style="text-align: center"> <a href="link 2"> B0034 BBa_K2560008 </a>
+
                            <td style="text-align: center"> <a href="link 3"> sfGFP BBa_K2560042 </a>
                              </tr>
+
                          </tr>
                              <tr>
+
                          <tr>
                                <td style="text-align: center">CDS </td>
+
                            <td style="text-align: center">Terminator </td>
                                <td style="text-align: center"> <a href="link 3"> sfGFP BBa_K2560042 </a>
+
                            <td style="text-align: center"> <a href="link 4"> B0015 BBa_K2560035 </a>
                              </tr>
+
                          </tr>
                              <tr>
+
                          <tr>
                                <td style="text-align: center">Terminator </td>
+
                            <td style="text-align: center">3' Connector </td>
                                <td style="text-align: center"> <a href="link 4"> B0015 BBa_K2560035 </a>
+
                            <td style="text-align: center"> <a href="link 5"> BBa_K2560080 </a>
                              </tr>
+
                          </tr>
                              <tr>
+
                          <tr>
                                <td style="text-align: center">3' Connector </td>
+
                            <td style="text-align: center">ORI: </td>
                                <td style="text-align: center"> <a href="link 5"> BBa_K2560080 </a>
+
                            <td style="text-align: center"> <a href="link 6"> ColE1 BBa_K2560036 </a>
                              </tr>
+
                          </tr>
                              <tr>
+
                          <tr>
                                <td style="text-align: center">ORI: </td>
+
                            <td style="text-align: center">Antibiotic-Resistance-Cassette</td>
                                <td style="text-align: center"> <a href="link 6"> ColE1 BBa_K2560036 </a>
+
                            <td style="text-align: center"> <a href="link 7"> Kan-RFP BBa_K2560056 </a>
                              </tr>
+
                          </tr>
                              <tr>
+
                                <td style="text-align: center">Antibiotic-Resistance-Cassette</td>
+
                                <td style="text-align: center"> <a href="link 7"> Kan-RFP BBa_K2560056 </a>
+
                              </tr>
+
  
                            </tbody>
+
                        </tbody>
                          </table>
+
                      </table>
                          <br> <!-- Tabelle -->
+
                      <br> <!-- Tabelle -->
                          <br> <br> <br>
+
                      <br> <br> <br>
                          The Golden Gate reactions should be pipetted together using the given parts and then
+
                      The Golden Gate reactions should be pipetted together using the given parts and then
                          betransformed in E. coliand be plated with similar amounts on agar plates. A colony with a
+
                      betransformed in E. coliand be plated with similar amounts on agar plates. A colony with a
                          correct assembled
+
                      correct assembled
                          vector would have afunctioning Transcription Unit which expresses GFP, which can be clearly
+
                      vector would have afunctioning Transcription Unit which expresses GFP, which can be clearly
                          distinguished from RFP expressing colonies which only carries the antibiotic cassette and
+
                      distinguished from RFP expressing colonies which only carries the antibiotic cassette and
                          false non fluorescent
+
                      false non fluorescent
                          colonies. <br>
+
                      colonies. <br>
                          The ratio of green to non-green colonies was used to evaluate which of the three protocols
+
                      The ratio of green to non-green colonies was used to evaluate which of the three protocols
                          yielded in the
+
                      yielded in the
                          highest transformation efficiency and the highest rate of positive clones.
+
                      highest transformation efficiency and the highest rate of positive clones.
                          <br> <br>
+
                      <br> <br>
                          <figure Style="text-align:center">
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                      <figure Style="text-align:center">
                            <img style="height: 60ex; width:80ex"
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                        <img style="height: 60ex; width:80ex"
                              src="https://static.igem.org/mediawiki/2019/9/91/T--marburg--interlab_package.jpeg"
+
                          src="https://static.igem.org/mediawiki/2019/9/91/T--marburg--interlab_package.jpeg"
                              alt="Interlab oackage">
+
                          alt="Interlab oackage">
                            <figcaption>
+
                        <figcaption>
                              Fig 1: Interlab package.
+
                          Fig 1: Interlab package.
                            </figcaption>
+
                        </figcaption>
                          </figure>
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                      </figure>
                          <br>
+
                      <br>
                          <br>
+
                      <br>
                          The handout with the used protocols can be downloaded <a
+
                      The handout with the used protocols can be downloaded <a
                            href=https://static.igem.org/mediawiki/2019/a/a0/T--marburg--Interlab_protocoll.pdf> here </a>
+
                        href=https://static.igem.org/mediawiki/2019/a/a0/T--marburg--Interlab_protocoll.pdf> here </a> </div>
                            </p> </p> </div> </div> </div> </div> </div> </div> </div> </div> <!--popup3-->
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                        </div> </div> </section> <div class="sub" onclick="popup('rbn3')">
                            <div class="sub" onclick="popup('rbn3')">
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                          <h1>
                                <h1>
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                            B E R L I N / D E L F T
                                  B E R L I N / D E L F T
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                          </h1>
                                </h1>
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                          <hr>
                                <hr>
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                          <p>
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+
  
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                    </div>
                            <div id="rbn3" class="popup">
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                              <div class="popup-container">
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                        <div class="popup-header">
                                  <h1 class="title">Berlin/Delft Collaborations</h1>
+
                          <h1 class="title">Berlin/Delft Collaborations</h1>
                                  <button type="button" onclick="hide('rbn3')">X</button>
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                          <button type="button" onclick="hide('rbn3')">X</button>
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                                    <p>
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                            <p>
                                      <figure Style="float:right; margin-left: 25px;">
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                              <figure Style="float:right; margin-left: 25px;">
                                        <img style="height: 15ex; width: 35ex"
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                                <img style="height: 15ex; width: 35ex"
                                          src="  https://static.igem.org/mediawiki/2019/9/9b/T--marburg--berlin_logo_richtig.png"
+
                                  src="  https://static.igem.org/mediawiki/2019/9/9b/T--marburg--berlin_logo_richtig.png"
                                          alt="Berlin logo">
+
                                  alt="Berlin logo">
                                      </figure>
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                              </figure>
                                      iGEM Berlin engineered the freshwater algae Chlamydomonas reinhardtii to degrade
+
                              iGEM Berlin engineered the freshwater algae Chlamydomonas reinhardtii to degrade
                                      Polyethylene
+
                              Polyethylene
                                      terephthalate
+
                              terephthalate
                                      (PET). For this goal they also built a bioreactor for their chassis. We sent
+
                              (PET). For this goal they also built a bioreactor for their chassis. We sent
                                      them our UTEX
+
                              them our UTEX
                                      strain to test if
+
                              strain to test if
                                      their photobioreactor is capable to cultivate other phototrophic organisms as
+
                              their photobioreactor is capable to cultivate other phototrophic organisms as
                                      well. They gained
+
                              well. They gained
                                      additional
+
                              additional
                                      experiences on growth conditions for phototrophic organisms and we could see our
+
                              experiences on growth conditions for phototrophic organisms and we could see our
                                      strains grow in
+
                              strains grow in
                                      a
+
                              a
                                      bioreactor environment.
+
                              bioreactor environment.
                                      <br>
+
                              <br>
                                      Click here to learn more about there project <a
+
                              Click here to learn more about there project <a
                                        href="https://2019.igem.org/Team:Humboldt_Berlin"> Chlamylicious </a>
+
                                href="https://2019.igem.org/Team:Humboldt_Berlin"> Chlamylicious </a>
                                      <br>
+
                              <br>
                                      <br>
+
                              <br>
                                      <br> <br> <br>
+
                              <br> <br> <br>
                                      <h> <b>Delft Collaborations </b></h> <!-- Delf-->
+
                              <h> <b>Delft Collaborations </b></h> <!-- Delf-->
  
  
                                      <figure Style="float:left; margin-right: 25px;">
+
                              <figure Style="float:left; margin-right: 25px;">
                                        <img style="height: 60 ex; width: 40ex"
+
                                <img style="height: 60 ex; width: 40ex"
                                          src="https://static.igem.org/mediawiki/2019/5/5e/T--marburg--Skype_DELF.jpeg"
+
                                  src="https://static.igem.org/mediawiki/2019/5/5e/T--marburg--Skype_DELF.jpeg"
                                          alt=" DELFT Bild">
+
                                  alt=" DELFT Bild">
                                        <figcaption> Fig. 1: Skype talk with TU Delft</figcaption>
+
                                <figcaption> Fig. 1: Skype talk with TU Delft</figcaption>
                                      </figure>
+
                              </figure>
  
                                      <figure Style="float:right; margin-left: 25px;">
+
                              <figure Style="float:right; margin-left: 25px;">
                                        <img style="height: 30ex; width: 30ex"
+
                                <img style="height: 30ex; width: 30ex"
                                          src="https://static.igem.org/mediawiki/2019/d/d4/T--marburg--DELF_logo_richtig.svg"
+
                                  src="https://static.igem.org/mediawiki/2019/d/d4/T--marburg--DELF_logo_richtig.svg"
                                          alt="DELF logo">
+
                                  alt="DELF logo">
  
                                      </figure>
+
                              </figure>
                                      <br>
+
                              <br>
                                      iGEM Delft created an all species encompassing toolbox, based on orthogonal gene
+
                              iGEM Delft created an all species encompassing toolbox, based on orthogonal gene
                                      expression and
+
                              expression and
                                      host
+
                              host
                                      independent plasmid replication. We exchanged multiple times over Molecular
+
                              independent plasmid replication. We exchanged multiple times over Molecular
                                      Cloning and toolbox
+
                              Cloning and toolbox
                                      designs.
+
                              designs.
                                      Additionally, we sent them parts in the PhytoBricks standard.
+
                              Additionally, we sent them parts in the PhytoBricks standard.
  
                                      Click here to learn more about there project <a
+
                              Click here to learn more about there project <a href="https://2019.igem.org/Team:TUDelft">
                                        href="https://2019.igem.org/Team:TUDelft">
+
                                project SCI-PHI 29 </a>
                                        project SCI-PHI 29 </a>
+
  
                                      <br>
+
                              <br>
                                    </p>
+
                            </p>
                                  </div>
+
                          </div>
                                  <br>
+
                          <br>
                                  <br>
+
                          <br>
                                  <br>
+
                          <br>
                                </div>
+
                        </div>
                              </div>
+
                      </div>
                            </div>
+
                    </div>
                            <div class="sub" onclick="popup('rbn4')">
+
                    <div class="sub" onclick="popup('rbn4')">
                              <!--UC Davis pop up-->
+
                      <!--UC Davis pop up-->
                              <div class="sub-header">
+
                      <div class="sub-header">
                                <h1>
+
                        <h1>
                                  U C<span style="visibility: hidden;">A</span>D A V I S
+
                          U C<span style="visibility: hidden;">A</span>D A V I S
                                </h1>
+
                        </h1>
                                <hr>
+
                        <hr>
                              </div>
+
                      </div>
                              <div class="sub-content">
+
                      <div class="sub-content">
                                <p>
+
                        <p>
  
                                </p>
 
                              </div>
 
                            </div>
 
                            <div id="rbn4" class="popup">
 
                              <div class="popup-container">
 
                                <div class="popup-header">
 
                                  <h1 class="title">UC Davis collaboration</h1>
 
                                  <button type="button" onclick="hide('rbn4')">X</button>
 
                                </div>
 
                                <div class="popup-content">
 
                                  <div>
 
                                    <p>
 
                                      <figure Style="float:left; margin-right: 25px;">
 
                                        <img style="height: 50ex; width: 40ex"
 
                                          src="https://static.igem.org/mediawiki/2019/4/49/T--marburg--UCD_OT2.jpeg"
 
                                          alt="UCD OT2">
 
                                      </figure>
 
                                      UC Davis iGEM team is one of the winners of the Opentrons competition in 2019.
 
                                      iGEM Marburg
 
                                      won one OT-2
 
                                      during last
 
                                      year’s edition of the competition and got contacted for a collaboration by iGEM
 
                                      UC Davis
 
                                      along with other
 
                                      winners from
 
                                      2018 and 2019.
 
                                      The goal for this automation InterLab collaboration was to collect data to
 
                                      determine the
 
                                      accuracy and
 
                                      reproducibility of
 
                                      the OT-2 compared to humans. To do this, UC Davis proposed to perform the
 
                                      standard iGEM
 
                                      protocol on serial
 
                                      dilutions
 
                                      with silica beads and fluorescein, each manually and with an OT-2. In total iGEM
 
                                      Marburg did
 
                                      four dilutions;
 
                                      twice with
 
                                      an OT-2 and twice manually. The data was then sent to UC Davis via the
 
                                      spreadsheet designed
 
                                      by them.
 
                                      Finally, iGEM
 
                                      Marburg aided by creating a Slack channel for all iGEM teams with an OT-2 to
 
                                      facilitate
 
                                      better communication
 
                                      and
 
                                      exchange in the future.
 
                                      <br><br>
 
                                      In total, seven teams participated and sent their data to UC Davis which are
 
                                      shown in the
 
                                      figure below.
 
                                      According to UC
 
                                      Davis, the fluorescence data was standardized using the iGEM MEFL conversion to
 
                                      standardize
 
                                      the plate reader
 
                                      measurements. Subsequently, the data was fitted using a linear regression model,
 
                                      whose
 
                                      quality is quantified
 
                                      using the
 
                                      r2 metric (it ranges from 0 to 1 with higher value indicates a better fit).
 
                                      <br>
 
                                      For the fluorescence the r2 value from the OT2 data beats human r2 value with
 
                                      0.94 and 0.90,
 
                                      respectively.
 
                                      Interestingly, for the silica beads, manual measurements yielded a more
 
                                      satisfactory result
 
                                      with r2 value of
 
                                      0.90
 
                                      compared to 0.82 from OT2 measurements. One possible explanation could be the
 
                                      speed of the
 
                                      OT-2: it took
 
                                      twice as long
 
                                      to complete this task with the OT-2 compared to a manual trial. This could lead
 
                                      to the
 
                                      sedimentation of the
 
                                      silica beads
 
                                      as the OT-2 went through their runs; therefore worsening its results. Also, as
 
                                      shown in Fig.
 
                                      2b, one team’s
 
                                      result
 
                                      deviates a lot from the rest of the teams, maybe if their result is taken from
 
                                      the overall
 
                                      evaluation a more
 
                                      comparable
 
                                      result between OT-2 and human can be observed.
 
                                      <br>
 
                                      <br>
 
                                      <figure Style="text-align:center">
 
                                        <img style="height: 50ex; width: 50ex"
 
                                          src="https://static.igem.org/mediawiki/2019/c/cc/T--marburg--UC_Davis_Graphic_1.png"
 
                                          alt=" UCD Graphic 1">
 
                                        <img style="height: 50ex; width: 50ex"
 
                                          src=" https://static.igem.org/mediawiki/2019/a/a7/T--marburg--UC_Davis_Graphic_2.png"
 
                                          alt=" UC Davis Graphic 2">
 
                                        <figcaption1>
 
                                          <br> Figure 1: a)OT-2 vs manual fluorescein measurement experiment. OT-2
 
                                          performed better
 
                                          with r2 value of 0.94 compared to 0.90 of human. b)OT-2 vs manual silica
 
                                          beads measurement experiment. Human performed better
 
                                          with r2 value of 0.90 compared to 0.82 of OT-2.
 
                                          </figcaption>
 
                                      </figure>
 
                                      <br>
 
                                    </p>
 
                                    <br>More information about this collaboration such as individual team data can be
 
                                    found on UC
 
                                    Davis wiki:
 
                                    <a href="https://2019.igem.org/Team:UC_Davis/Collaborations"> Wiki UC Davis
 
                                      Collaboration </a>
 
                                    <br>
 
 
                         </p>
 
                         </p>
 +
                      </div>
 
                     </div>
 
                     </div>
 +
                    <div id="rbn4" class="popup">
 +
                      <div class="popup-container">
 +
                        <div class="popup-header">
 +
                          <h1 class="title">UC Davis collaboration</h1>
 +
                          <button type="button" onclick="hide('rbn4')">X</button>
 +
                        </div>
 +
                        <div class="popup-content">
 +
                          <div>
 +
                            <p>
 +
                              <figure Style="float:left; margin-right: 25px;">
 +
                                <img style="height: 50ex; width: 40ex"
 +
                                  src="https://static.igem.org/mediawiki/2019/4/49/T--marburg--UCD_OT2.jpeg" alt="UCD OT2">
 +
                              </figure>
 +
                              UC Davis iGEM team is one of the winners of the Opentrons competition in 2019.
 +
                              iGEM Marburg
 +
                              won one OT-2
 +
                              during last
 +
                              year’s edition of the competition and got contacted for a collaboration by iGEM
 +
                              UC Davis
 +
                              along with other
 +
                              winners from
 +
                              2018 and 2019.
 +
                              The goal for this automation InterLab collaboration was to collect data to
 +
                              determine the
 +
                              accuracy and
 +
                              reproducibility of
 +
                              the OT-2 compared to humans. To do this, UC Davis proposed to perform the
 +
                              standard iGEM
 +
                              protocol on serial
 +
                              dilutions
 +
                              with silica beads and fluorescein, each manually and with an OT-2. In total iGEM
 +
                              Marburg did
 +
                              four dilutions;
 +
                              twice with
 +
                              an OT-2 and twice manually. The data was then sent to UC Davis via the
 +
                              spreadsheet designed
 +
                              by them.
 +
                              Finally, iGEM
 +
                              Marburg aided by creating a Slack channel for all iGEM teams with an OT-2 to
 +
                              facilitate
 +
                              better communication
 +
                              and
 +
                              exchange in the future.
 +
                              <br><br>
 +
                              In total, seven teams participated and sent their data to UC Davis which are
 +
                              shown in the
 +
                              figure below.
 +
                              According to UC
 +
                              Davis, the fluorescence data was standardized using the iGEM MEFL conversion to
 +
                              standardize
 +
                              the plate reader
 +
                              measurements. Subsequently, the data was fitted using a linear regression model,
 +
                              whose
 +
                              quality is quantified
 +
                              using the
 +
                              r2 metric (it ranges from 0 to 1 with higher value indicates a better fit).
 +
                              <br>
 +
                              For the fluorescence the r2 value from the OT2 data beats human r2 value with
 +
                              0.94 and 0.90,
 +
                              respectively.
 +
                              Interestingly, for the silica beads, manual measurements yielded a more
 +
                              satisfactory result
 +
                              with r2 value of
 +
                              0.90
 +
                              compared to 0.82 from OT2 measurements. One possible explanation could be the
 +
                              speed of the
 +
                              OT-2: it took
 +
                              twice as long
 +
                              to complete this task with the OT-2 compared to a manual trial. This could lead
 +
                              to the
 +
                              sedimentation of the
 +
                              silica beads
 +
                              as the OT-2 went through their runs; therefore worsening its results. Also, as
 +
                              shown in Fig.
 +
                              2b, one team’s
 +
                              result
 +
                              deviates a lot from the rest of the teams, maybe if their result is taken from
 +
                              the overall
 +
                              evaluation a more
 +
                              comparable
 +
                              result between OT-2 and human can be observed.
 +
                              <br>
 +
                              <br>
 +
                              <figure Style="text-align:center">
 +
                                <img style="height: 50ex; width: 50ex"
 +
                                  src="https://static.igem.org/mediawiki/2019/c/cc/T--marburg--UC_Davis_Graphic_1.png"
 +
                                  alt=" UCD Graphic 1">
 +
                                <img style="height: 50ex; width: 50ex"
 +
                                  src=" https://static.igem.org/mediawiki/2019/a/a7/T--marburg--UC_Davis_Graphic_2.png"
 +
                                  alt=" UC Davis Graphic 2">
 +
                                <figcaption1>
 +
                                  <br> Figure 1: a)OT-2 vs manual fluorescein measurement experiment. OT-2
 +
                                  performed better
 +
                                  with r2 value of 0.94 compared to 0.90 of human. b)OT-2 vs manual silica
 +
                                  beads measurement experiment. Human performed better
 +
                                  with r2 value of 0.90 compared to 0.82 of OT-2.
 +
                                  </figcaption>
 +
                              </figure>
 +
                              <br>
 +
                            </p>
 +
                            <br>More information about this collaboration such as individual team data can be
 +
                            found on UC
 +
                            Davis wiki:
 +
                            <a href="https://2019.igem.org/Team:UC_Davis/Collaborations"> Wiki UC Davis
 +
                              Collaboration </a>
 +
                            <br>
 +
                            </p>
 +
                          </div>
  
                    <br>
+
                          <br>
  
                  </div>
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                        </div>
                </div>
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                      </div>
              </div>
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                    </div>
              <div class="sub" onclick="popup('rbn5')">
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                  <h1>
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                        <h1>
                    U F L O R I D A
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                          U F L O R I D A
                  </h1>
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                        </h1>
                  <hr>
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                        <hr>
                </div>
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                      </div>
                <div class="sub-content">
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                        </p>
                </div>
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                      </div>
              </div>
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                    </div>
              <div id="rbn5" class="popup">
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                    <div id="rbn5" class="popup">
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                      <div class="popup-container">
                  <div class="popup-header">
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                        <div class="popup-header">
                    <h1 class="title">UFlorida</h1>
+
                          <h1 class="title">UFlorida</h1>
                    <button type="button" onclick="hide('rbn5')">X</button>
+
                          <button type="button" onclick="hide('rbn5')">X</button>
                  </div>
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                        </div>
                  <div class="popup-content" style="text-align: justify;>
+
                        <div class="popup-content" style="text-align: justify;>
 
               <div></div><p>
 
               <div></div><p>
 
                     <br>
 
                     <br>
  
 
                     <figure  Style=" float:left; margin-right: 25px;">
 
                     <figure  Style=" float:left; margin-right: 25px;">
                    <img style="height: 30ex; width: 40ex"
+
                          <img style="height: 30ex; width: 40ex"
                      src="https://static.igem.org/mediawiki/2019/f/f7/T--Florida--iGEMWeb1.png" alt="Florida">
+
                            src="https://static.igem.org/mediawiki/2019/f/f7/T--Florida--iGEMWeb1.png" alt="Florida">
                    <figcaption>
+
                          <figcaption>
  
                    </figcaption>
+
                          </figcaption>
                    </figure>
+
                          </figure>
                    This semester we had the pleasure of mentoring UFlorida for their Wiki
+
                          This semester we had the pleasure of mentoring UFlorida for their Wiki
                    design. Our member, Rene Inckemann, aided UFlorida in their quest to create
+
                          design. Our member, Rene Inckemann, aided UFlorida in their quest to create
                    a visually accessible Wiki, similar to what we did this past iGEM season.
+
                          a visually accessible Wiki, similar to what we did this past iGEM season.
                    We helped shape UFlorida’s website into an interactive and appealing
+
                          We helped shape UFlorida’s website into an interactive and appealing
                    landscape, while maintaining the integrity of their goal and project. We
+
                          landscape, while maintaining the integrity of their goal and project. We
                    advised them on their font choices- specifically their use of bold and
+
                          advised them on their font choices- specifically their use of bold and
                    italicized words-, along with answering questions about our work with the
+
                          italicized words-, along with answering questions about our work with the
                    visually disabled community and utilizing our “Accessible Wiki Guide” from
+
                          visually disabled community and utilizing our “Accessible Wiki Guide” from
                    the previous year.
+
                          the previous year.
                    <br>
+
                          <br>
                    Besides answering questions specifically about their project, we also
+
                          Besides answering questions specifically about their project, we also
                    offered valuable information about when to start working on the Wiki and
+
                          offered valuable information about when to start working on the Wiki and
                    questions about coding. Working with a young team like UFlorida offered us
+
                          questions about coding. Working with a young team like UFlorida offered us
                    a great mentorship opportunity.
+
                          a great mentorship opportunity.
                    <br>
+
                          <br>
  
                    <figure style="align-content:center;">
+
                          <figure style="align-content:center;">
                      <img src="https://static.igem.org/mediawiki/2019/2/29/T--marburg--UFlorida_Rene.jpeg" alt="Florida">
+
                            <img src="https://static.igem.org/mediawiki/2019/2/29/T--marburg--UFlorida_Rene.jpeg"
                      <figcaption>
+
                              alt="Florida">
                        Fig. 1: Skypecall with UFlorida
+
                            <figcaption>
                      </figcaption>
+
                              Fig. 1: Skypecall with UFlorida
                    </figure>
+
                            </figcaption>
                    <br>
+
                          </figure>
                    </p>
+
                          <br>
                  </div>
+
                          </p>
                  <br>
+
                        </div>
                  <br>
+
                        <br>
                </div>
+
                        <br>
              </div>
+
                      </div>
              <div class="sub" onclick="popup('rbn6')">
+
                    </div>
                <div class="sub-header">
+
                    <div class="sub" onclick="popup('rbn6')">
                  <h1>I N T E R A C T I O N S</h1>
+
                      <div class="sub-header">
                  <h1>W I T H</h1>
+
                        <h1>I N T E R A C T I O N S</h1>
                  <h1>O T H E R<span style="visibility: hidden;">A</span>T E A M S</h1>
+
                        <h1>W I T H</h1>
                  <hr>
+
                        <h1>O T H E R<span style="visibility: hidden;">A</span>T E A M S</h1>
                </div>
+
                        <hr>
                <div class="sub-content">
+
                      </div>
                  <p>
+
                      <div class="sub-content">
                  </p>
+
                        <p>
                </div>
+
                        </p>
              </div>
+
                      </div>
              <div id="rbn6" class="popup">
+
                    </div>
                <div class="popup-container">
+
                    <div id="rbn6" class="popup">
                  <div class="popup-header">
+
                      <div class="popup-container">
                    <h1 class="title">Interactions with other teams</h1>
+
                        <div class="popup-header">
                    <button type="button" onclick="hide('rbn6')">X</button>
+
                          <h1 class="title">Interactions with other teams</h1>
                  </div>
+
                          <button type="button" onclick="hide('rbn6')">X</button>
                  <div class="popup-content" style="text-align: justify;">
+
                        </div>
                    <div></div>
+
                        <div class="popup-content" style="text-align: justify;">
                    <p>
+
                          <div></div>
 +
                          <p>
  
                      <b>Mike the microbe</b>
+
                            <b>Mike the microbe</b>
                      <figure Style="text-align:center">
+
                            <figure Style="text-align:center">
                        <img src="  https://static.igem.org/mediawiki/2019/b/b0/T--marburg--Mike_microbe.png"
+
                              <img src="  https://static.igem.org/mediawiki/2019/b/b0/T--marburg--Mike_microbe.png"
                          alt=" Mike the Mircrobe">
+
                                alt=" Mike the Mircrobe">
                        <figcaption>
+
                              <figcaption>
                          Figure 1: Mike the mircrobe in our lab.
+
                                Figure 1: Mike the mircrobe in our lab.
                        </figcaption>
+
                              </figcaption>
                      </figure>
+
                            </figure>
                      We participated in the “Mike the microbe” collaboration of the iGEM Team US AFRL CarrollHS. They
+
                            We participated in the “Mike the microbe” collaboration of the iGEM Team US AFRL CarrollHS.
                      sent us
+
                            They
                      their virtual mascots Mike the Microbe and Chia the Chitinase so we could take pictures with
+
                            sent us
                      them to
+
                            their virtual mascots Mike the Microbe and Chia the Chitinase so we could take pictures with
                      connect
+
                            them to
                      all iGEM teams around the world via social media. It brought us great joy to join to this
+
                            connect
                      collaboration and
+
                            all iGEM teams around the world via social media. It brought us great joy to join to this
                      let the two little buddies visit our daily life in our incubators for cyanobacteria.
+
                            collaboration and
                      <br>
+
                            let the two little buddies visit our daily life in our incubators for cyanobacteria.
                      <br>
+
                            <br>
                    </p>
+
                            <br>
                    <br>
+
                          </p>
                    <p>
+
                          <br>
                      <h4><b>Postcards Düsseldorf</b></h4> <!-- Postcard challenge-->
+
                          <p>
                      iGEM Düsseldorf called for their traditional collaboration project, a long year postcard
+
                            <h4><b>Postcards Düsseldorf</b></h4> <!-- Postcard challenge-->
                      campaign with the
+
                            iGEM Düsseldorf called for their traditional collaboration project, a long year postcard
                      purpose to educate and to show the public about the different topics and projects in Synthetic
+
                            campaign with the
                      Biology and
+
                            purpose to educate and to show the public about the different topics and projects in
                      especially regarding all the iGEM projects. With interesting designs and a short project
+
                            Synthetic
                      abstract iGEM teams
+
                            Biology and
                      could spread their ideas using the postcards to share their thinking to each other and the
+
                            especially regarding all the iGEM projects. With interesting designs and a short project
                      society. Our
+
                            abstract iGEM teams
                      title and postcard design was about our photosynthetic project „Syntex“. You can see
+
                            could spread their ideas using the postcards to share their thinking to each other and the
                      Synechococcus elongatus
+
                            society. Our
                      UTEX 2973 direly needing a refreshing drink, a cute little draft from our team member Jonas.
+
                            title and postcard design was about our photosynthetic project „Syntex“. You can see
                      <br>
+
                            Synechococcus elongatus
                      <figure Style="text-align:center">
+
                            UTEX 2973 direly needing a refreshing drink, a cute little draft from our team member Jonas.
                        <img src="    https://static.igem.org/mediawiki/2019/f/fe/T--marburg--Postcard.png"
+
                            <br>
                          alt="Postcard challenge">
+
                            <figure Style="text-align:center">
                        <figcaption>
+
                              <img src="    https://static.igem.org/mediawiki/2019/f/fe/T--marburg--Postcard.png"
                          Figure 2: Our Postcard for the Postcard collaboration from Düsseldorf.
+
                                alt="Postcard challenge">
                        </figcaption>
+
                              <figcaption>
                      </figure>
+
                                Figure 2: Our Postcard for the Postcard collaboration from Düsseldorf.
                      <br>
+
                              </figcaption>
                    </p>
+
                            </figure>
                    <br>
+
                            <br>
                    <p>
+
                          </p>
                      <h5><b>iGEMxSDGs challenge</b></h5>
+
                          <br>
                      IGEM Costa Rica, Tuebingen, and TAS Taipei created an iGEMxSDGs challenge as collaboration. They
+
                          <p>
                      asked us to
+
                            <h5><b>iGEMxSDGs challenge</b></h5>
                      choose four of the Sustainable Development Goals (SDGs) proposed by the United Nations (UN). We
+
                            IGEM Costa Rica, Tuebingen, and TAS Taipei created an iGEMxSDGs challenge as collaboration.
                      joined this
+
                            They
                      collaboration challenge and spread it on our social media account. We decided on the following
+
                            asked us to
                      goals:
+
                            choose four of the Sustainable Development Goals (SDGs) proposed by the United Nations (UN).
                      <br>
+
                            We
                      <figure Style="text-align:center">
+
                            joined this
                        <img src="  https://static.igem.org/mediawiki/2019/1/18/T--marburg--SDG_chalenge.png"
+
                            collaboration challenge and spread it on our social media account. We decided on the
                          alt="SGD Challenge">
+
                            following
                        <figcaption>
+
                            goals:
                          Figure 3: SDG challenge.
+
                            <br>
                        </figcaption>
+
                            <figure Style="text-align:center">
                      </figure>
+
                              <img src="  https://static.igem.org/mediawiki/2019/1/18/T--marburg--SDG_chalenge.png"
                      <br>
+
                                alt="SGD Challenge">
                    </p>
+
                              <figcaption>
                    <br>
+
                                Figure 3: SDG challenge.
 +
                              </figcaption>
 +
                            </figure>
 +
                            <br>
 +
                          </p>
 +
                          <br>
  
                    <p>
+
                          <p>
                      <h5><b>Who wore it best? #labcoatchallenge</b></h5>
+
                            <h5><b>Who wore it best? #labcoatchallenge</b></h5>
                      The Stony Brook iGEM Team challenged us to design an outfit for a runway from a standard lab
+
                            The Stony Brook iGEM Team challenged us to design an outfit for a runway from a standard lab
                      coat.
+
                            coat.
                      The
+
                            The
                      outfit had to be created by tying, not using duct tape, cut or sew, etc. After designing our
+
                            outfit had to be created by tying, not using duct tape, cut or sew, etc. After designing our
                      outfits
+
                            outfits
                      four of
+
                            four of
                      our members presented their style on our ‘runway’ while paparazzi took their photos. As an
+
                            our members presented their style on our ‘runway’ while paparazzi took their photos. As an
                      outfit we
+
                            outfit we
                      chose a
+
                            chose a
                      dress highlighting the neckline, a shoulder free dress, a knotted dress and a skirt to bring
+
                            dress highlighting the neckline, a shoulder free dress, a knotted dress and a skirt to bring
                      glamour
+
                            glamour
                      to the
+
                            to the
                      daily routine in the labs. Especially our guys were rocking their outfits as you can see here
+
                            daily routine in the labs. Especially our guys were rocking their outfits as you can see
                      x
+
                            here
                      <br>
+
                            x
                      <figure Style="text-align:center">
+
                            <br>
                        <img style="height: 75ex; width: 60ex"
+
                            <figure Style="text-align:center">
                          src="https://static.igem.org/mediawiki/2019/7/74/T--marburg--Labcoat_Burgi.jpeg" alt="labcoat">
+
                              <img style="height: 75ex; width: 60ex"
                        <figcaption>
+
                                src="https://static.igem.org/mediawiki/2019/7/74/T--marburg--Labcoat_Burgi.jpeg"
                          Figure 4: Our model Burgis for the labcoatchallenge.
+
                                alt="labcoat">
                        </figcaption>
+
                              <figcaption>
                      </figure>
+
                                Figure 4: Our model Burgis for the labcoatchallenge.
                      <br>
+
                              </figcaption>
                    </p>
+
                            </figure>
                  </div>
+
                            <br>
                  <br>
+
                          </p>
                  <br>
+
                        </div>
                </div>
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                        <br>
              </div>
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                        <br>
              <div class="sub" onclick="popup('rbn7')">
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                      </div>
                <div class="sub-header">
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                    </div>
                  <h1>M E E T U P S</h1>
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                    <div class="sub" onclick="popup('rbn7')">
                  <hr>
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                      <div class="sub-header">
                </div>
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                        <h1>M E E T U P S</h1>
                <div class="sub-content">
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                        <hr>
                  <p>
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                      </div>
                  </p>
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                      <div class="sub-content">
                </div>
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                        <p>
              </div>
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                        </p>
              <div id="rbn7" class="popup">
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                      </div>
                <div class="popup-container">
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                    </div>
                  <div class="popup-header">
+
                    <div id="rbn7" class="popup">
                    <h1 class="title">Meet ups</h1>
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                      <div class="popup-container">
                    <button type="button" onclick="hide('rbn7')">X</button>
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                        <div class="popup-header">
                  </div>
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                          <h1 class="title">Meet ups</h1>
                  <div class="popup-content" style="text-align: justify;">
+
                          <button type="button" onclick="hide('rbn7')">X</button>
                    <div></div>
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                        </div>
                    <p>
+
                        <div class="popup-content" style="text-align: justify;">
 +
                          <div></div>
 +
                          <p>
  
                      <h2><b>iGEM Spring Festival in Bonn</b></h2>
+
                            <h2><b>iGEM Spring Festival in Bonn</b></h2>
                      From 3rd – 5th Mai we met our iGEM colleagues for the Spring Festival in Bonn. Professors of the
+
                            From 3rd – 5th Mai we met our iGEM colleagues for the Spring Festival in Bonn. Professors of
                      university of Bonn presented their research fields which gained huge interest. We heard lectures
+
                            the
                      of immunology and neurosciences, as well as reviving mammoths. During the lectures, specific
+
                            university of Bonn presented their research fields which gained huge interest. We heard
                      topics were deepened in small seminar groups, such as the ethical tenability of CRISPR applied
+
                            lectures
                      at humans and other animals. At the poster sessions we got the first time in contact with the
+
                            of immunology and neurosciences, as well as reviving mammoths. During the lectures, specific
                      other teams’ projects. Afterwards we had the opportunity to vote for the best project, which
+
                            topics were deepened in small seminar groups, such as the ethical tenability of CRISPR
                      iGEM Düsseldorf won. Besides that, the meetup was filled with a lot of awarding categories. We
+
                            applied
                      competed in the categories for “Best Video”, “Best Poster”, “Best Project” and a single person
+
                            at humans and other animals. At the poster sessions we got the first time in contact with
                      had the chance to win the award for “Best Meme”. The iGEM Team Bonn offered spontaneously a
+
                            the
                      little football table tournament, where two of our team members won. In the evening we learnt a
+
                            other teams’ projects. Afterwards we had the opportunity to vote for the best project, which
                      lot about Bonn as a city from a guide living there for ages. Afterwards, the iGEM Teams met in
+
                            iGEM Düsseldorf won. Besides that, the meetup was filled with a lot of awarding categories.
                      several groups in restaurants and bars. We merged with iGEM Kaiserslautern and exchanged our
+
                            We
                      projects and ideas for the rest of the evening.
+
                            competed in the categories for “Best Video”, “Best Poster”, “Best Project” and a single
                      <br>
+
                            person
                      On the second day, the iGEM Team Bonn offered a competition out of three rounds, where we
+
                            had the chance to win the award for “Best Meme”. The iGEM Team Bonn offered spontaneously a
                      competed against other teams. We were asked iGEM specific questions, had to solve riddles for an
+
                            little football table tournament, where two of our team members won. In the evening we
                      escape room and finished a lab challenge afterwards. Our team could compete until the end and
+
                            learnt a
                      won the prize! Thanks again to Doulix for this awesome prize!
+
                            lot about Bonn as a city from a guide living there for ages. Afterwards, the iGEM Teams met
                      <br>
+
                            in
                      We particularly thank the iGEM Team Bonn for the huge effort and the great meetup!
+
                            several groups in restaurants and bars. We merged with iGEM Kaiserslautern and exchanged our
                      <br>
+
                            projects and ideas for the rest of the evening.
                      <figure Style="text-align:center">
+
                            <br>
                        <img style="height: 50ex; width: 65ex"
+
                            On the second day, the iGEM Team Bonn offered a competition out of three rounds, where we
                          src="https://static.igem.org/mediawiki/2019/a/a9/T--marburg--meet_u_bonn.png"
+
                            competed against other teams. We were asked iGEM specific questions, had to solve riddles
                          alt="Erlangen meetup">
+
                            for an
                        <figcaption>
+
                            escape room and finished a lab challenge afterwards. Our team could compete until the end
                          Fig. 1: Two representatives of Doulix celebrating with us.
+
                            and
                        </figcaption>
+
                            won the prize! Thanks again to Doulix for this awesome prize!
                      </figure>
+
                            <br>
 +
                            We particularly thank the iGEM Team Bonn for the huge effort and the great meetup!
 +
                            <br>
 +
                            <figure Style="text-align:center">
 +
                              <img style="height: 50ex; width: 65ex"
 +
                                src="https://static.igem.org/mediawiki/2019/a/a9/T--marburg--meet_u_bonn.png"
 +
                                alt="Erlangen meetup">
 +
                              <figcaption>
 +
                                Fig. 1: Two representatives of Doulix celebrating with us.
 +
                              </figcaption>
 +
                            </figure>
  
                      <br>
+
                            <br>
  
                      <h3><b>Erlangen collaboration meetup</b></h3>
+
                            <h3><b>Erlangen collaboration meetup</b></h3>
                      On the 17th – 19th of May we attended the collaboration meetup hosted by the iGEM Team Erlangen
+
                            On the 17th – 19th of May we attended the collaboration meetup hosted by the iGEM Team
                      2019. There, we met the iGEM teams of Straßbourg, Tübingen, Vienna and of course Erlangen. Apart
+
                            Erlangen
                      from listening to the interesting talks from the various professors there, we made a lot of new
+
                            2019. There, we met the iGEM teams of Straßbourg, Tübingen, Vienna and of course Erlangen.
                      friends and took the chance to talk about possible collaborations with the other teams and also
+
                            Apart
                      promote our collaborations, such as the colony picking project and the Golden Gate webinar
+
                            from listening to the interesting talks from the various professors there, we made a lot of
                      (evtl. verlinken). We would like to thank iGEM Team Erlangen very much for organizing this
+
                            new
                      wonderful meetup and are happy to see them soon in Boston.
+
                            friends and took the chance to talk about possible collaborations with the other teams and
                      <br>
+
                            also
 +
                            promote our collaborations, such as the colony picking project and the Golden Gate webinar
 +
                            (evtl. verlinken). We would like to thank iGEM Team Erlangen very much for organizing this
 +
                            wonderful meetup and are happy to see them soon in Boston.
 +
                            <br>
  
                      <figure Style="text-align:center">
+
                            <figure Style="text-align:center">
                        <img style="height: 40ex; width: 65ex"
+
                              <img style="height: 40ex; width: 65ex"
                          src="https://static.igem.org/mediawiki/2019/0/01/T--marburg--meet_up_erlangen.jpeg"
+
                                src="https://static.igem.org/mediawiki/2019/0/01/T--marburg--meet_up_erlangen.jpeg"
                          alt="Erlangen meetup">
+
                                alt="Erlangen meetup">
                        <figcaption>
+
                              <figcaption>
                          Fig. 2: Group photo from the Erlangen mett up (Michael Burgis from Team Marburg in the left
+
                                Fig. 2: Group photo from the Erlangen mett up (Michael Burgis from Team Marburg in the
                          side).
+
                                left
                        </figcaption>
+
                                side).
                      </figure>
+
                              </figcaption>
 +
                            </figure>
  
                      <br>
+
                            <br>
  
                      <h><b>Düsseldorf meetup</b></h>
+
                            <h><b>Düsseldorf meetup</b></h>
                      <br>From 5th – 7th July we went to the HHU for the German meetup. The calendar offered lots of
+
                            <br>From 5th – 7th July we went to the HHU for the German meetup. The calendar offered lots
                      lectures with interesting topics such as the Excellent Cluster of Prof. Andreas Weber “CEPLAS”
+
                            of
                      but also non-scientific aspects like how to do presentations. We tried to visit all of them
+
                            lectures with interesting topics such as the Excellent Cluster of Prof. Andreas Weber
                      while presenting our poster in the hall. There we got in touch with other iGEM Teams also learnt
+
                            “CEPLAS”
                      about their projects. We promoted our Webinar project and laid the foundation stone for future
+
                            but also non-scientific aspects like how to do presentations. We tried to visit all of them
                      collaborations. On the second day, iGEM Düsseldorf organized a panel discussion about the issues
+
                            while presenting our poster in the hall. There we got in touch with other iGEM Teams also
                      concerning green genetic engineering. Thereby, we got great input on how to structure our panel
+
                            learnt
                      discussion and which subjects should be mentioned. Beside the regular program organized by iGEM
+
                            about their projects. We promoted our Webinar project and laid the foundation stone for
                      Düsseldorf we used a lot of chances to get in contact with other teams. After the presentations
+
                            future
                      a couple of tourist guides showed us the beautiful old town of Düsseldorf and explained some
+
                            collaborations. On the second day, iGEM Düsseldorf organized a panel discussion about the
                      interesting historical facts. Afterwards we had again the possibility to meet with other iGEMers
+
                            issues
                      in a pub and talk about the projects, especially to find weaknesses or opportunities for
+
                            concerning green genetic engineering. Thereby, we got great input on how to structure our
                      collaborations. This really went successfully due to the time we spend with iGEM Team Aachen and
+
                            panel
                      Kaiserslautern. The iGEM Team Düsseldorf also arranged a game contest between the teams, where
+
                            discussion and which subjects should be mentioned. Beside the regular program organized by
                      we lost in the final to our good friends from Potsdam. Congrats! <br>
+
                            iGEM
 +
                            Düsseldorf we used a lot of chances to get in contact with other teams. After the
 +
                            presentations
 +
                            a couple of tourist guides showed us the beautiful old town of Düsseldorf and explained some
 +
                            interesting historical facts. Afterwards we had again the possibility to meet with other
 +
                            iGEMers
 +
                            in a pub and talk about the projects, especially to find weaknesses or opportunities for
 +
                            collaborations. This really went successfully due to the time we spend with iGEM Team Aachen
 +
                            and
 +
                            Kaiserslautern. The iGEM Team Düsseldorf also arranged a game contest between the teams,
 +
                            where
 +
                            we lost in the final to our good friends from Potsdam. Congrats! <br>
  
                      <figure Style="text-align:center">
+
                            <figure Style="text-align:center">
                        <img style="height: 70ex; width: 50ex"
+
                              <img style="height: 70ex; width: 50ex"
                          src="https://static.igem.org/mediawiki/2019/e/e4/T--marburg--meet_up_Duesseldorf.jpeg"
+
                                src="https://static.igem.org/mediawiki/2019/e/e4/T--marburg--meet_up_Duesseldorf.jpeg"
                          alt="Du meetup">
+
                                alt="Du meetup">
                        <figcaption>
+
                              <figcaption>
                          Fig. 3: Team photo from the Düsseldorf meetup.
+
                                Fig. 3: Team photo from the Düsseldorf meetup.
                        </figcaption>
+
                              </figcaption>
                      </figure>
+
                            </figure>
                      <br>Thanks again to iGEM Düsseldorf for the huge effort and the great meetup! <br>
+
                            <br>Thanks again to iGEM Düsseldorf for the huge effort and the great meetup! <br>
                    </p>
+
                          </p>
                    <br>
+
                          <br>
  
                    <h><b> Vilnius, Lithuania – Biohackathon Lab App 2019</b></h>
+
                          <h><b> Vilnius, Lithuania – Biohackathon Lab App 2019</b></h>
                    <br>In August 2019 our Team participated in the Biohackathon Lab App, organized by the
+
                          <br>In August 2019 our Team participated in the Biohackathon Lab App, organized by the
                    Vilnius-Lithuania Team 2019. Together with the iGEM Teams Stockholm and UCopenhagen, as well as
+
                          Vilnius-Lithuania Team 2019. Together with the iGEM Teams Stockholm and UCopenhagen, as well
                    several non-iGEM Teams we sat together for a weekend packed with problems, ideas and neat
+
                          as
                    solutions.
+
                          several non-iGEM Teams we sat together for a weekend packed with problems, ideas and neat
                    With the task of creating an application that tackles a self-found problem, we sat together and
+
                          solutions.
                    brainstormed about what could be done.
+
                          With the task of creating an application that tackles a self-found problem, we sat together
                    <br>
+
                          and
                    During this time we were starting to work more with the Opentrons OT-2 and soon realized that some
+
                          brainstormed about what could be done.
                    of our biologists had trouble integrating protocols in the robot themselves, as this is primarily
+
                          <br>
                    done by writing the protocol in Python and pushing it directly to the robot – no convenient
+
                          During this time we were starting to work more with the Opentrons OT-2 and soon realized that
                    application to change parameters, such as the amount of reactions,was included in the protocols.
+
                          some
                    In our heads the idea to have a user-friendly GUI grew more and more and soon we found ourselves
+
                          of our biologists had trouble integrating protocols in the robot themselves, as this is
                    standing in the Vilnius University Life Sciences Center.
+
                          primarily
                    <br>“We” were two biologists and one mathematician, so we talked to some of the other participants
+
                          done by writing the protocol in Python and pushing it directly to the robot – no convenient
                    that did not have a team yet and found the perfect fit to complement our small team: Nour Alsamsam
+
                          application to change parameters, such as the amount of reactions,was included in the
                    was happy to join us for this weekend and provided us with his coding skills – huge thank you to
+
                          protocols.
                    you, Nour!
+
                          In our heads the idea to have a user-friendly GUI grew more and more and soon we found
                    Together we tried our best to come up with a suitable app and presented it in the end, having more
+
                          ourselves
                    ideas in our heads than we could implement in such a short time – it was clear for us, that we
+
                          standing in the Vilnius University Life Sciences Center.
                    would continue with this project later on!
+
                          <br>“We” were two biologists and one mathematician, so we talked to some of the other
                    <br>In conclusion, the Biohackathon was an awesome and productive meeting of the iGEM Teams
+
                          participants
                    Stockholm, Copenhagen, Vilnius and Marburg. We talked about our projects, offered each other
+
                          that did not have a team yet and found the perfect fit to complement our small team: Nour
                    feedback on current issues in the lab and shared many ideas.
+
                          Alsamsam
                    We are very grateful that we got the opportunity to meet so many experts from different fields,
+
                          was happy to join us for this weekend and provided us with his coding skills – huge thank you
                    which really helped getting a fresh perspective on our project and are now looking forward to meet
+
                          to
                    the other teams again at the Giant Jamboree!
+
                          you, Nour!
                    <br>
+
                          Together we tried our best to come up with a suitable app and presented it in the end, having
                    <figure Style="text-align:center">
+
                          more
                      <img src="Pic" alt="Vilnius hacker">
+
                          ideas in our heads than we could implement in such a short time – it was clear for us, that we
                      <figcaption>
+
                          would continue with this project later on!
                        Fig. 4: Meet up Vilnius, Lithuania .
+
                          <br>In conclusion, the Biohackathon was an awesome and productive meeting of the iGEM Teams
                      </figcaption>
+
                          Stockholm, Copenhagen, Vilnius and Marburg. We talked about our projects, offered each other
                    </figure>
+
                          feedback on current issues in the lab and shared many ideas.
 +
                          We are very grateful that we got the opportunity to meet so many experts from different
 +
                          fields,
 +
                          which really helped getting a fresh perspective on our project and are now looking forward to
 +
                          meet
 +
                          the other teams again at the Giant Jamboree!
 +
                          <br>
 +
                          <figure Style="text-align:center">
 +
                            <img src="Pic" alt="Vilnius hacker">
 +
                            <figcaption>
 +
                              Fig. 4: Meet up Vilnius, Lithuania .
 +
                            </figcaption>
 +
                          </figure>
  
                    </p>
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                          </p>
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                        <br>
 +
                        <br>
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                      </div>
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                    </div>
 
                   </div>
 
                   </div>
                  <br>
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               </section>
                  <br>
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                </div>
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               </div>
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             </div>
 
             </div>
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Revision as of 20:29, 21 October 2019

C O L L A B O R A T I O N S


Through this iGEM year we interacted with so many iGEM Teams all around the world. It was a pleasure working with all the different teams and learn from each other. We got so many impressions about other projects and hope we could help with our collaborations. A huge Thank you for every team collaboration!


C O L O N Y
P I C T U R E S


In our colony picking collaboration we asked other iGEM teams to supply us with data for our picking algorithm. Thanks to this group effort we could build our colony picking unit.

T H EAG O L D E NAG A T E

C O L L A B O R A T I O N