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<h1>Notebook</h1> | <h1>Notebook</h1> |
Revision as of 22:00, 8 October 2019
Notebook
Wet lab: Collectively completed ~40 transformations, ran 3 burden assay plates (exp007, 008, 009)
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Dry Lab: Python script written to create a record of transformation DNA sequences for later comparison (reference file generation)
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Wet Lab: Completed ~62 transformations total, ran 7 burden assay plates (exp007-013)
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Dry Lab: Wrapping up reference file for all biobrick DNA sequences, wiki graphics are being made, starting interactive simulation of burden
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Wet Lab: Transformations, burden assays
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Dry Lab: Looked at data for burden analysis
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Wet Lab: Completed ~77 transformations total, ran 4 burden assay plates
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Alex
Dry Lab: Previous burden assay experiments were analyzed in RStudio
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Wet Lab: Transfomrations, burden assays
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Alex, Michelle
Dry Lab: Burden analysis
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Wet Lab: Decided to update transformation plan and have a goal of 1000 transformations total, ~100 from commonly used parts and ~900 from the 2018 kit plate.
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Alex, Michelle
Dry Lab: Planned University of Texas at Arlington, Texas Tech, and Rice University meet up and voice chat, tested out a few parts in breseq (sequence analysis program) with reference file, refined burden scripts for analyzing data
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Wet Lab: Completed ~80 transformations, ran 2 burden assay plates
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Alex, Michelle
Dry Lab: Created a script to programmatically run breseq
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
bla. bla.
Wet Lab: Completed ~11 transformations, ran 4 burden assay plates
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Alex, Michelle
Dry Lab: Gathered distribution of DNA parts by type and sub-part number
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Wet Lab: Made new batch of competent cells for transformations because of contamination of old cells, transformations, ran 2 burden assays
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Alex, Michelle
Dry Lab: Worked on sequence analysis, simulation script, and burden analysis
People: Noor, Jordan, Diya, Ginny, Angela, Shireen
Wet Lab: Completed ~30 transformations
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina
Dry Lab: Fixing burden analysis --> refined quantitative interpretation of burden, figured out how to calculate percentage of each type of burden
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina
Wet Lab: 8 burden assays done
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina, Alex
Dry Lab: Wiki, burden analysis
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina
Wet Lab: Burden assays
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina, Alex
Dry Lab: Made graphs, worked on statistical correction of data, wiki
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina, Alex
Wet Lab: Redid some burden assays
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina, Alex
Dry Lab: Collaboration write up, got data from Texas Tech University about calibration strains, wiki
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina
Wet Lab: Burden assay of interesting parts
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina
Dry Lab: Wiki
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Alex, Mina
Wet Lab: Burden assays
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina
Dry Lab: Wiki
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Michelle, Alex, Raul, Mina
Wet Lab: Redid some burden assays
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Mina
Dry Lab: Statistics, wiki
People: Noor, Jordan, Diya, Ginny, Angela, Shireen, Michelle, Alex, Raul, Mina
Notebook
Document the dates you worked on your project. This should be a detailed account of the work done each day for your project.
What should this page have?
- Chronological notes of what your team is doing.
- Brief descriptions of daily important events.
- Pictures of your progress.
- Mention who participated in what task.
Inspiration
You can see what others teams have done to organize their notes:
- <a href="https://2018.igem.org/Team:Munich/Notebook">2018 Munich</a>
- <a href="https://2014.igem.org/Team:ATOMS-Turkiye/Notebook">2014 ATOMS-Turkiye</a>
- <a href="https://2014.igem.org/Team:Tec-Monterrey/ITESM14_project.html#tab_notebook">2014 Tec Monterrey</a>
- <a href="https://2014.igem.org/Team:Kyoto/Notebook/Magnetosome_Formation#title">2014 Kyoto</a>
- <a href="https://2014.igem.org/Team:Cornell/notebook">2014 Cornell</a>
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