Difference between revisions of "Team:USP-Brazil"

 
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Bioproduction is a process of great industrial interest that generates useful products through microorganisms. The most common system for control of the bioproduction are the use of chemical induction compounds (like IPTG and arabinose) that are, not only expensive, but also lacks fine control of induction. Our goal is to built a genetic circuit that can switch between two different states of activation with just a single input of blue LED light. The system was built in E.coli and works based on DNA-protein inhibition loops, recombinases capable to invert the DNA orientation of a promoter region and a light-responsive genetic circuit. In addition, fluorescent proteins such as GFP, RFP and YFP function as output for our circuit. We also aim to compare the efficiency between light-induced promoters to chemical-ones, by evaluating strength and leack. With our circuit, it is our hope that  bioproduction can become more practical, controlled and economical.
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Bioproduction is a process of great industrial interest that generates useful products through microorganisms. The most common system for control of the bioproduction is the use of chemical induction compounds (like IPTG and arabinose) that are, not only expensive, but also lacks fine control of induction. Our goal is to build a genetic circuit that can switch between two different states of activation with just a single input of blue LED light. The system was built in E. coli and works based on DNA-protein repression loops, recombinases capable to invert the DNA orientation of a promoter region and a light-responsive genetic circuit. In addition, fluorescent proteins such as GFP, RFP and YFP function as output for our circuit. We also aim to compare the efficiency between light-induced promoters to chemical-ones, by evaluating strength and leak. With this circuit, it is our goal to make bioproduction more practical, controlled and economical.
  
 
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Light is a fine, precise inductor, as the specificity of the signal is in the emissor, the wavelength and intensity, and in the receptor, in our case, a protein, that recognize a specific wavelength ortogonali. Besides that, light can be activated instantaneously, simply by turning on it’s source. To stop the induction, it’s not necessary to change the culture media or wash the culture, a process that can make some bioproduction impossible. Using light opens new possibilities for this industry. </p>
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Light is an easy to use, precise inductor. As a signal it depends on the wavelength, intensity and the receptor, in our case a protein that recognize a specific wavelength. This gives a very specific and controlled signal to control gene expression. Besides that, light can be activated instantaneously, simply by turning on its source. Further, to stop the induction, it’s not necessary to change or wash the culture media, a process that can make some bio-production processes impossible. Using light opens new possibilities for this industry. </p>
 
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<p style = "text-align: left;" >We wanted to make bioproduction an optimized process, and in our research we learn that a switch will be useful to regulate expression of two different states. For example, to produce two different compounds switching back and forward between the two, to get to an optimum. Another example of  this strategy is the use of switch to alternate between growth of the bacteria culture and production of the compound of interest. This allows testing different combinations of time of growth and production to get to a maximum yield like shown in this case.
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<p style = "text-align: left;" >To make bioproduction an optimized process, a switch would be useful to regulate gene expression at two different stages. For example, to produce two different compounds switching back and forth between the two, to get to an optimum. Another example is to use the switch to alternate between growth of the bacteria culture and production of the compound of interest. This allows testing different combinations of growth time and compound biosynthesis activation to get the maximum yield, <a href="https://www.nature.com/articles/nature26141"><b>like shown in this case</b></a>
 
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Latest revision as of 03:11, 14 December 2019



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Genetic Switch for Bioproduction

Bioproduction is a process of great industrial interest that generates useful products through microorganisms. The most common system for control of the bioproduction is the use of chemical induction compounds (like IPTG and arabinose) that are, not only expensive, but also lacks fine control of induction. Our goal is to build a genetic circuit that can switch between two different states of activation with just a single input of blue LED light. The system was built in E. coli and works based on DNA-protein repression loops, recombinases capable to invert the DNA orientation of a promoter region and a light-responsive genetic circuit. In addition, fluorescent proteins such as GFP, RFP and YFP function as output for our circuit. We also aim to compare the efficiency between light-induced promoters to chemical-ones, by evaluating strength and leak. With this circuit, it is our goal to make bioproduction more practical, controlled and economical.

Light is an easy to use, precise inductor. As a signal it depends on the wavelength, intensity and the receptor, in our case a protein that recognize a specific wavelength. This gives a very specific and controlled signal to control gene expression. Besides that, light can be activated instantaneously, simply by turning on its source. Further, to stop the induction, it’s not necessary to change or wash the culture media, a process that can make some bio-production processes impossible. Using light opens new possibilities for this industry.

To make bioproduction an optimized process, a switch would be useful to regulate gene expression at two different stages. For example, to produce two different compounds switching back and forth between the two, to get to an optimum. Another example is to use the switch to alternate between growth of the bacteria culture and production of the compound of interest. This allows testing different combinations of growth time and compound biosynthesis activation to get the maximum yield, like shown in this case

USP-Brazil