Team:Tunghai TAPG/Notebook

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Name of medicament Vendor Serial number
Acrilamide(29:1) USB AC0353
Agar BD 214010
Agarose Invitrogen 17852
Ampicilin sodium salt Sigma A9518
Beta-mercaptoethanol Plus one 17-1317-01
Bisacrylamide Sigma 146072
Calcium chloride Sigma 10043-52-4
Comassie Brilliant Blue Merck 1.15444.00025
DTT(Dithiothreitol) Sigma D632
EDTA(Ethylenediaminetetraacetic acid) USB US15699
Ethanol Showa 0502-3160
Glycerol Merck 1.04092.1000
Glyeine USB 123009
Hydrogen chloride TEDIA 7647-01-0
Imidazole USB 115860
IPTG(Isopropyl Beta-D-1-Thiogalactopyranoside) Calbiochem B46679
Kanamycin Sigma K0254
PMSF(Phenylmethanesulfonyl floride) Sigma P7626
Potassium chloride Merck 1.04936.1000
Sodium Chloride KANTO chemical 37144-00
Sodium dihtdrogen phosphate Sigma 1.06370.0050
SDS(Sodium Dodecyl Sulfate) USB US75819
Sodium hydrogen phosphate SHOWA 1932-7150
Sodium hydroxide Merck
TEMED(N,N,N’,N’,-Tetramethylenediamine) Merck 8.08742.0005
Tris base USB US75825
Tryptone BD 5027930
Tween-20 SHOWA
Yeast extract Affymetrix 4220471
Biochemical reagent and kit name Vendor Serial number
QIAprep Miniprep QIAGEN 27106
Clean/Gel Extraction Kit Biokit Bio-C100
1Kb DNA Ladder Biokit Bio-1kb
100bp DNA Ladder Biokit Bio-100
500bp DNA Ladder Biokit Bio-50
40mM dNTPs Biokit Bio-NTP-10
Taq polymerase Allbio ABTGMBP02
6x Loading Dye Biokit Bio-LDY
Protein Marker Ivitrogen 02101-250
SYBR safe DNA Gel Stain Ivitrogen S33120
T4 DNA Ligase M020T
BasI-HFv2 NEB R3733S
BasI-HF NEB R339L
BCA protein assay kit Thermo 23225
Name of strain Source of strain
Escherichia coil DH5α Food Industry Research and Development Instiute
Escherichia coil BL21(DE3) Lucigen
Escherichia coil C41(DE3) pLysS Lucigen

Date Project fortnightly
02/17-03/02
  • Wet Lab: Designed the vector(TAPG)
  • Dry Lab: The members were organized and everyone expressed their views on the project.
  • Human practice: Browsing the previous iGEM wiki, and brainstorming about our team project
03/03-03/16
  • Wet Lab: Designed the primers(eGFP、SUMO、6x His tag、intein)
  • Dry Lab: Because our product is based on antimicrobial peptide as the main component of hospital’s supply, we need to detail the relationship between the various pointers of the environment in the hospital and the growth of bacteria, such as the temperature and humidity in the influence on bacterial growth and the effect of peptide.
  • Human practice: Brainstorming possible outreach activities, including a science camp, high school lecture and volunteer etc.
03/17-03/30
  • Wet Lab: Primers have arrived .PCR Amplification and then check PCR product on agarose gel.
  • Dry Lab: For the project we were searching for paper to find out how to design model.
  • Human practice: Asking expert for the advise of our project.
03/31-04/13
  • Wet Lab: Ligase and overlap extension PCR.
  • Dry Lab: We thought that the growth status of bacteria had the effect on our final product, so we planned to set up the growth model of E.coli first.
  • Human practice: Meetup with different iGEM team and asking their experience about our current problem.
04/14-04/27
  • Wet Lab: Heat Shock Transformation of Chemically Component E.coli( DH5α). Used PCR to colony, afterward Run the gel to do initial analysis, we could know from Agarose gel electrophoresis the results of expansion are mostly fit the size
  • Dry Lab: We looked for the literature on the bacterial growth model and found that Gompertz model was recognized and recommended by many researchers.
  • Human practice: Conduct a Questionnaire ranging from under18 and above 65 about public cognition.
04/28-05/11
  • Wet Lab: DNA Sequencing (vector designed is Successful).
  • Dry Lab: We asked the experimental group for help to do the growth curve of E.coli in general environment, and then we continued to study the Gompertz model.
  • Human practice: Holding a camp for high school student, teaching them basic synthesis biology.
05/12-05/25
  • Wet Lab: Designed primers for expression of Antimicrobial peptide.
  • Dry Lab: We consolidated and analyzed the data from the experimental group, after that we set up our growth model based on the Gompertz model.
  • Human practice: Visit different alumni like department of chemical engineering.
05/26-06/08
  • Wet Lab: Designed primers for expression of Antimicrobial peptide.
  • Dry Lab: We made a preliminary model of the growth model, but we still searched papers in the hope that the model could be perfected.
  • Human practice: Target on tour project and ask help for more profession problem.
06/09-06/22
  • Wet Lab: Primers have arrived .PCR Amplification and then check PCR product on agarose gel. Ligase. Ligase product was subjected to DNA extraction using a Gene-Spin TM 1-4-3 DNA Purification Kit, and plasmids were used PCR. Then Run the gel to do initial analysis.
  • Dry Lab: We compared the improved model with the data from the experimental group.
  • Human practice: Hold an activity to kindergarden student and make them know how fun the science is.
06/23-07/06
  • Wet Lab: Heat Shock Transformation of Chemically Component C43 E. coli. Isolation of plasmid in E.coli(C43).
  • Dry Lab: We wanted or maximize product effect at the lowest cost. So we designed some experiments in order to obtain the best convention and the suitable effective time of peptide.
  • Human practice: Meet up with 2019 NCTU iGEM on video.
07/07-07/20
  • Wet Lab: Used PCR to colony, afterward Run the gel to do initial analysis, we could know from Agarose gel electrophoresis the results of expansion are mostly fit the size.
  • Dry Lab: We still search for information for suitable model references.
  • Human practice: Speech to student of other major.
07/21-08/03
  • Wet Lab: Protein Overexpression Protocol. And cell disruption.
  • Dry Lab: We asked the teachers who came from the department of bioscience and chemistry for the design and some related questions on the experiments.
  • Human practice: Meet up with 2019 mingdao iGEM onsite.
08/04-08/17
  • Wet Lab: Protein Overexpression Protocol. And cell disruption..
  • Dry Lab: We had an experimental discussion with the experimental group.
  • Human practice: Take part in 2019 Taiwan conference.
08/18-08/31
  • Wet Lab: protein purification
  • Dry Lab: We assisted the experimental group in the experiment.
  • Human practice: Collaborate with iGEM mingdao.
09/01-09/14
  • Wet Lab: Growth curve measurement (Antimicrobial peptide)
  • Dry Lab: We analyzed the data and tried to work out the equation.
  • Human practice: Edit iGEM wiki page
09/15-09/28
  • Wet Lab: MIC test.
  • Dry Lab: We applied the computer software matlab try to make the figure of model.
  • Human practice: Edit iGEM wiki page
09/29-10/12
  • Wet Lab: protein purification
  • Dry Lab: We asked the instructor whether the model right or not.
  • Human practice: Edit iGEM wiki page.
10/12-10/26
  • Wet Lab: Edit iGEM wiki page.
  • Dry Lab: We discussed our final models and submitted the data.
  • Human practice: Edit iGEM wiki page.