Difference between revisions of "Team:Fudan-TSI/Collaborations"

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{{Fudan-TSI}}
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/* DEFAULT WIKI SETTINGS */
 
/* DEFAULT WIKI SETTINGS */
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   #content { margin-left: 0; padding:0px; width:100%;}
 
   #content { margin-left: 0; padding:0px; width:100%;}
 
   .judges-will-not-evaluate { border: 4px solid #e4dede; padding: 2% !important; width: 92%!important; }
 
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   #FudanTSIBody li { list-style: none; }
 
     </style>
 
     </style>
     <title>2019 Team:Fudan-TSI Collaborations</title>
+
     <title>Collaborations | 2019 iGEM Team:Fudan-TSI</title>
 
</head>
 
</head>
 
<body>
 
<body>
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   <header>
 
   <header>
 
   <div id="emptyBar" style="position:relative;width: 100%;"></div><nav id="topNav" class="black z-depth-0_5"><div class="nav-wrapper"><div id="teamLogo" class="brand-logo"> <a href="/Team:Fudan-TSI" target="_self"><img alt="2019 team logo" src="https://static.igem.org/mediawiki/2019/d/d3/T--Fudan-TSI--HomepageLogo.gif"></a></div><ul id="nav-mobile" class="right">
 
   <div id="emptyBar" style="position:relative;width: 100%;"></div><nav id="topNav" class="black z-depth-0_5"><div class="nav-wrapper"><div id="teamLogo" class="brand-logo"> <a href="/Team:Fudan-TSI" target="_self"><img alt="2019 team logo" src="https://static.igem.org/mediawiki/2019/d/d3/T--Fudan-TSI--HomepageLogo.gif"></a></div><ul id="nav-mobile" class="right">
 +
    <li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown1">Project</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown2">Results</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown3">Model</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown4">Parts</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown5">Human&nbsp;practices</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown6">Team</a></li>
 +
    <li class="hide-on-med-and-down"><a href="/Team:Fudan-TSI/Judging">Judging</a></li>
 
     <li> <a id="navList" data-target="slide-out" class="waves-effect waves-light sidenav-trigger right"> <i class="fa fa-navicon" style="font-size: 24px"></i> </a></li></ul></div> </nav>
 
     <li> <a id="navList" data-target="slide-out" class="waves-effect waves-light sidenav-trigger right"> <i class="fa fa-navicon" style="font-size: 24px"></i> </a></li></ul></div> </nav>
 
   <!-- Dropdown and List elements in navigation bar -->
 
   <!-- Dropdown and List elements in navigation bar -->
 +
  <ul id="dropdown1" class="dropdown-content">
 +
      <li><a href="/Team:Fudan-TSI/Description">Background</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Design">Design</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Experiments">Experiments</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Applied_Design">Applied&nbsp;design</a></li>
 +
  </ul>
 +
  <ul id="dropdown2" class="dropdown-content">
 +
      <li><a href="/Team:Fudan-TSI/Demonstrate#ReverseTranscription">Reverse&nbsp;transcription</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Demonstrate#Recombination">Recombination</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Demonstrate">Demonstration</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Measurement">Measurement</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Notebook">Notebook</a></li>
 +
  </ul>
 +
  <ul id="dropdown3" class="dropdown-content">
 +
      <li><a href="/Team:Fudan-TSI/Model">Modeling</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Software">Software</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Hardware">Hardware</a></li>
 +
  </ul>
 +
  <ul id="dropdown4" class="dropdown-content">
 +
      <li><a href="/Team:Fudan-TSI/Basic_Part">Basic&nbsp;parts</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Composite_Part">Composite&nbsp;parts</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Improve">Part&nbsp;improvement</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Part_Collection">Part&nbsp;collection</a></li>
 +
  </ul>
 +
  <ul id="dropdown5" class="dropdown-content">
 +
      <li><a href="/Team:Fudan-TSI/Public_Engagement">Public&nbsp;engagement</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Human_Practices#IntegratedHumanPractice">Integrated&nbsp;HP</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Collaborations">Collaborations</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Safety">Safety</a></li>
 +
  </ul>
 +
  <ul id="dropdown6" class="dropdown-content">
 +
      <li><a href="/Team:Fudan-TSI/Team">Members</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Attributions">Attributions</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Team#Acknowledge">Acknowledge</a></li>
 +
      <li><a href="/Team:Fudan-TSI/Heritage">Heritage</a></li>
 +
  </ul>
 +
  
 
   <ul id="slide-out" class="sidenav">
 
   <ul id="slide-out" class="sidenav">
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         <li class="onThisPageNav"><a href="#section2">Shanghai_YGQ</a></li>
 
         <li class="onThisPageNav"><a href="#section2">Shanghai_YGQ</a></li>
 
         <li class="onThisPageNav"><a href="#section3">Fudan</a></li>
 
         <li class="onThisPageNav"><a href="#section3">Fudan</a></li>
        <li class="onThisPageNav"><a href="#section4">SYSU-Medicine</a></li>
 
 
         <li class="onThisPageNav"><a href="#section5">SMMU-China</a></li>
 
         <li class="onThisPageNav"><a href="#section5">SMMU-China</a></li>
 +
        <li class="onThisPageNav"><a href="#section4">SYSU-Medicine</a></li>
 
         <li class="onThisPageNav"><a href="#section6">ECUST_China</a></li>
 
         <li class="onThisPageNav"><a href="#section6">ECUST_China</a></li>
  
         <li><span class="pageSidebar">Team: Fudan-TSI</span></li><li><div class="collapsible-header"><span class="pageSidebar">Project</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Description">Background</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Design">Design</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Experiments">Experiments</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Applied_Design">Applied design</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Judging">Judging</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Results</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate#ReverseTranscription">Reverse transcription</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate#Recombination">Recombination</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate">Demonstration</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Measurement">Measurement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Notebook">Notebook</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Model</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Model">Modeling</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Software">Software</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Hardware">Hardware</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Parts</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Basic_Part">Basic parts</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Composite_Part">Composite parts</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Improve">Part improvement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Part_Collection">Part collection</a></li></ul></div></li><li><div class="collapsible-header active"><span class="pageSidebar">Human practices</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Public_Engagement">Public engagement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Human_Practices#IntegratedHumanPractice">Integrated HP</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Collaborations">Collaborations</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Safety">Safety</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Team</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Team">Members</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Attributions">Attributions</a></li><li><a class="pageSidebar" href="https://2018.igem.org/Team:Fudan/Heritage" target=_blank>Heritage</a></li></ul></div></li>
+
         <li><span class="pageSidebar">Team: Fudan-TSI</span></li><li><div class="collapsible-header"><span class="pageSidebar">Project</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Description">Background</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Design">Design</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Experiments">Experiments</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Applied_Design">Applied design</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Judging">Judging</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Results</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate#ReverseTranscription">Reverse transcription</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate#Recombination">Recombination</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate">Demonstration</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Measurement">Measurement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Notebook">Notebook</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Model</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Model">Modeling</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Software">Software</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Hardware">Hardware</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Parts</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Basic_Part">Basic parts</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Composite_Part">Composite parts</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Improve">Part improvement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Part_Collection">Part collection</a></li></ul></div></li><li><div class="collapsible-header active"><span class="pageSidebar">Human practices</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Public_Engagement">Public engagement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Human_Practices#IntegratedHumanPractice">Integrated HP</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Collaborations">Collaborations</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Safety">Safety</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Team</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Team">Members</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Attributions">Attributions</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Heritage">Heritage</a></li></ul></div></li>
 
       </ul><!-- .expandable -->
 
       </ul><!-- .expandable -->
 
     </li>
 
     </li>
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           </div>
 
           </div>
 
           <div class="hide-on-small-only">
 
           <div class="hide-on-small-only">
              <div style="text-align:center;padding-top:80px"><center><img style="height:120px;width:auto" src="https://static.igem.org/mediawiki/2019/2/2d/T--Fudan-TSI--coverCollaboration.gif" /></center></div>
+
<style>
 +
#demo {width:100%;height:100%;position:relative;z-index:-100;}
 +
#demo svg {width:100%;height:100%;position:fixed;}
 +
#demo svg g {mix-blend-mode:lighten;}
 +
#demo svg polygon {stroke:none;fill:white;}
 +
</style>
 +
<div id="pageCover">
 +
  <svg id="demo" viewBox="0 0 1600 600" preserveAspectRatio="xMidYMid slice">
 +
        <defs>
 +
        <linearGradient id="grad1" x1="0" y1="0" x2="1" y2="0" color-interpolation="sRGB">
 +
          <stop id="stop1a" offset="0%" stop-color="#12a3b4"></stop>
 +
          <stop id="stop1b" offset="100%" stop-color="#ff509e"></stop>
 +
        </linearGradient>
 +
        <linearGradient id="grad2" x1="0" y1="0" x2="1" y2="0" color-interpolation="sRGB">
 +
          <stop id="stop2a" offset="0%" stop-color="#e3bc13"></stop>
 +
          <stop id="stop2b" offset="100%" stop-color="#00a78f"></stop>
 +
        </linearGradient>
 +
        </defs>
 +
        <rect id="rect1" x="0" y="0" width="1600" height="600" stroke="none" fill="url(#grad1)"></rect>
 +
        <rect id="rect2" x="0" y="0" width="1600" height="600" stroke="none" fill="url(#grad2)"></rect>
 +
  </svg>
 +
</div><!-- #pageCover -->
 +
<script src="https://2019.igem.org/wiki/index.php?title=Template:Fudan-TSI/bkg&action=raw&ctype=text/javascript"></script>
 +
        <script>
 +
      //////////////////////////////
 +
      // Demo Functions
 +
      //////////////////////////////
 +
      function bkgFunction(showStats) {
 +
        // stats
 +
        if (showStats) {
 +
        var stats = new Stats();
 +
        stats.domElement.style.position = 'absolute';
 +
        stats.domElement.style.left = '0';
 +
        stats.domElement.style.top = '0';
 +
        document.body.appendChild(stats.domElement);
 +
        requestAnimationFrame(function updateStats(){
 +
          stats.update();
 +
          requestAnimationFrame(updateStats);
 +
        });
 +
        }
 +
        // init
 +
        var svg = document.getElementById('demo');
 +
        tesselation.setup(svg);
 +
        gradients.setup();
 +
        var lastTransitionAt, transitionDelay = 10000, transitionDuration = 3000;
 +
        function playNextTransition() {
 +
        tesselation.next(transitionDuration);
 +
        gradients.next(transitionDuration);
 +
        };
 +
        function tick(time) {
 +
        if (!lastTransitionAt || time - lastTransitionAt > transitionDelay) {
 +
          lastTransitionAt = time;
 +
          playNextTransition();
 +
        }
 +
        window.requestAnimationFrame(tick);
 +
        }
 +
        window.requestAnimationFrame(tick);
 +
      }
 +
      //////////////////////////////
 +
      // Delaunay Triangulation
 +
      //////////////////////////////
 +
      var calcDelaunayTriangulation = (function() {
 +
        var EPSILON = 1.0 / 1048576.0;
 +
        function getSuperT(vertices) {
 +
        var xMin = Number.POSITIVE_INFINITY, yMin = Number.POSITIVE_INFINITY,
 +
          xMax = Number.NEGATIVE_INFINITY, yMax = Number.NEGATIVE_INFINITY,
 +
          i, xDiff, yDiff, maxDiff, xCenter, yCenter;
 +
        for(i = vertices.length; i--; ) {
 +
          if(vertices[i][0] < xMin) xMin = vertices[i][0];
 +
          if(vertices[i][0] > xMax) xMax = vertices[i][0];
 +
          if(vertices[i][1] < yMin) yMin = vertices[i][1];
 +
          if(vertices[i][1] > yMax) yMax = vertices[i][1];
 +
        }
 +
        xDiff = xMax - xMin;
 +
        yDiff = yMax - yMin;
 +
        maxDiff = Math.max(xDiff, yDiff);
 +
        xCenter = xMin + xDiff * 0.5;
 +
        yCenter = yMin + yDiff * 0.5;
 +
        return [
 +
          [xCenter - 20 * maxDiff, yCenter - maxDiff],
 +
          [xCenter, yCenter + 20 * maxDiff],
 +
          [xCenter + 20 * maxDiff, yCenter - maxDiff]
 +
        ];
 +
        }
 +
        function circumcircle(vertices, i, j, k) {
 +
        var xI = vertices[i][0], yI = vertices[i][1],
 +
          xJ = vertices[j][0], yJ = vertices[j][1],
 +
          xK = vertices[k][0], yK = vertices[k][1],
 +
          yDiffIJ = Math.abs(yI - yJ), yDiffJK = Math.abs(yJ - yK),
 +
          xCenter, yCenter, m1, m2, xMidIJ, xMidJK, yMidIJ, yMidJK, xDiff, yDiff;
 +
        // bail condition
 +
        if(yDiffIJ < EPSILON){
 +
          if (yDiffJK < EPSILON){
 +
            throw new Error("Can't get circumcircle since all 3 points are y-aligned");
 +
          }
 +
        }
 +
 
 +
 
 +
        // calc circumcircle center x/y, radius
 +
        m1  = -((xJ - xI) / (yJ - yI));
 +
        m2  = -((xK - xJ) / (yK - yJ));
 +
        xMidIJ = (xI + xJ) / 2.0;
 +
        xMidJK = (xJ + xK) / 2.0;
 +
        yMidIJ = (yI + yJ) / 2.0;
 +
        yMidJK = (yJ + yK) / 2.0;
 +
        xCenter = (yDiffIJ < EPSILON) ? xMidIJ :
 +
          (yDiffJK < EPSILON) ? xMidJK :
 +
          (m1 * xMidIJ - m2 * xMidJK + yMidJK - yMidIJ) / (m1 - m2);
 +
        yCenter  = (yDiffIJ > yDiffJK) ?
 +
          m1 * (xCenter - xMidIJ) + yMidIJ :
 +
          m2 * (xCenter - xMidJK) + yMidJK;
 +
        xDiff = xJ - xCenter;
 +
        yDiff = yJ - yCenter;
 +
        // return
 +
        return {i: i, j: j, k: k, x: xCenter, y: yCenter, r: xDiff * xDiff + yDiff * yDiff};
 +
        }
 +
        function dedupeEdges(edges) {
 +
        var i, j, a, b, m, n;
 +
        for(j = edges.length; j; ) {
 +
          b = edges[--j]; a = edges[--j];
 +
          for(i = j; i; ) {
 +
          n = edges[--i]; m = edges[--i];
 +
          if(a === m){
 +
            if (b===n){
 +
              edges.splice(j, 2); edges.splice(i, 2);
 +
              break;
 +
            }
 +
          }
 +
          if(a === n){
 +
            if (b===m){
 +
              edges.splice(j, 2); edges.splice(i, 2);
 +
              break;
 +
            }
 +
          }
 +
          }
 +
        }
 +
        }
 +
        return function(vertices) {
 +
        var n = vertices.length,
 +
          i, j, indices, st, candidates, locked, edges, dx, dy, a, b, c;
 +
        // bail if too few / too many verts
 +
        if(n < 3 || n > 2000)
 +
          return [];
 +
        // copy verts and sort indices by x-position
 +
        vertices = vertices.slice(0);
 +
        indices = new Array(n);
 +
        for(i = n; i--; )
 +
          indices[i] = i;
 +
        indices.sort(function(i, j) {
 +
          return vertices[j][0] - vertices[i][0];
 +
        });
 +
        // supertriangle
 +
        st = getSuperT(vertices);
 +
        vertices.push(st[0], st[1], st[2]);
 +
        // init candidates/locked tris list
 +
        candidates = [circumcircle(vertices, n + 0, n + 1, n + 2)];
 +
        locked = [];
 +
        edges = [];
 +
        // scan left to right
 +
        for(i = indices.length; i--; edges.length = 0) {
 +
          c = indices[i];
 +
          // check candidates tris against point
 +
          for(j = candidates.length; j--; ) {
 +
          // lock tri if point to right of circumcirc
 +
          dx = vertices[c][0] - candidates[j].x;
 +
          if (dx > 0.0){
 +
            if(dx * dx > candidates[j].r){
 +
              locked.push(candidates[j]);
 +
            candidates.splice(j, 1);
 +
            continue;
 +
            }
 +
          }
 +
 
 +
 
 +
          // point outside circumcirc = leave candidates
 +
          dy = vertices[c][1] - candidates[j].y;
 +
          if(dx * dx + dy * dy - candidates[j].r > EPSILON)
 +
            continue;
 +
          // point inside circumcirc = break apart, save edges
 +
          edges.push(
 +
            candidates[j].i, candidates[j].j,
 +
            candidates[j].j, candidates[j].k,
 +
            candidates[j].k, candidates[j].i
 +
          );
 +
          candidates.splice(j, 1);
 +
          }
 +
          // new candidates from broken edges
 +
          dedupeEdges(edges);
 +
          for(j = edges.length; j; ) {
 +
          b = edges[--j];
 +
          a = edges[--j];
 +
          candidates.push(circumcircle(vertices, a, b, c));
 +
          }
 +
        }
 +
        // close candidates tris, remove tris touching supertri verts
 +
        for(i = candidates.length; i--; )
 +
          locked.push(candidates[i]);
 +
        candidates.length = 0;
 +
        for(i = locked.length; i--; )
 +
          if(locked[i].i < n){
 +
            if(locked[i].j < n){
 +
              if(locked[i].k < n){
 +
                candidates.push(locked[i].i, locked[i].j, locked[i].k);
 +
              }
 +
            }
 +
          }
 +
 
 +
 
 +
        // done
 +
        return candidates;
 +
        };
 +
      })();
 +
      var tesselation = (function() {
 +
        var svg, svgW, svgH, prevGroup;
 +
        function createRandomTesselation() {
 +
        var wW = window.innerWidth;
 +
        var wH = window.innerHeight;
 +
        var gridSpacing = 250, scatterAmount = 0.75;
 +
        var gridSize, i, x, y;
 +
        if (wW / wH > svgW / svgH) { // window wider than svg = use width for gridSize
 +
          gridSize = gridSpacing * svgW / wW;
 +
        } else { // window taller than svg = use height for gridSize
 +
          gridSize = gridSpacing * svgH / wH;
 +
        }
 +
        var vertices = [];
 +
        var xOffset = (svgW % gridSize) / 2, yOffset = (svgH % gridSize) / 2;
 +
        for (x = Math.floor(svgW/gridSize) + 1; x >= -1; x--) {
 +
          for (y = Math.floor(svgH/gridSize) + 1; y >= -1; y--) {
 +
          vertices.push(
 +
            [
 +
            xOffset + gridSize * (x + scatterAmount * (Math.random() - 0.5)),
 +
            yOffset + gridSize * (y + scatterAmount * (Math.random() - 0.5))
 +
            ]
 +
          );
 +
          }
 +
        }
 +
        var triangles = calcDelaunayTriangulation(vertices);
 +
        var group = document.createElementNS('http://www.w3.org/2000/svg','g');
 +
        var polygon;
 +
        for(i = triangles.length; i; ) {
 +
          polygon = document.createElementNS('http://www.w3.org/2000/svg','polygon');
 +
          polygon.setAttribute('points',
 +
          vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1] + ' ' +
 +
          vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1] + ' ' +
 +
          vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1]
 +
          );
 +
          group.appendChild(polygon);
 +
        }
 +
        return group;
 +
        }
 +
        return {
 +
        setup: function(svgElement) {
 +
          svg = svgElement;
 +
          var vb = svg.getAttribute('viewBox').split(/\D/g);
 +
          svgW = vb[2];
 +
          svgH = vb[3];
 +
        },
 +
        next: function(t) {
 +
          var toRemove, i, n;
 +
          t /= 1000;
 +
          if(prevGroup){
 +
            if(prevGroup.children){
 +
              if(prevGroup.children.length){
 +
                toRemove = prevGroup;
 +
                n = toRemove.children.length;
 +
                for (i = n; i--; ) {
 +
                  TweenMax.to(toRemove.children[i], t*0.4, {opacity: 0, delay: t*(0.3*i/n)});
 +
                }
 +
                TweenMax.delayedCall(t * (0.7 + 0.05), function(group) { svg.removeChild(group); }, [toRemove], this);
 +
              }
 +
            }
 +
          }
 +
 
 +
          var g = createRandomTesselation();
 +
          n = g.children.length;
 +
          for (i = n; i--; ) {
 +
          TweenMax.fromTo(g.children[i], t*0.4, {opacity: 0}, {opacity: 0.3 + 0.25 * Math.random(), delay: t*(0.3*i/n + 0.3), ease: Back.easeOut});
 +
          }
 +
          svg.appendChild(g);
 +
          prevGroup = g;
 +
        }
 +
        }
 +
      })();
 +
      //////////////////////////////
 +
      // Gradients
 +
      //////////////////////////////
 +
      var gradients = (function() {
 +
        var grad1, grad2, showingGrad1;
 +
        // using colors from IBM Design Colors this time
 +
        var colors = [ // 14 colors - use 3-5 span
 +
        '#3c6df0', // ultramarine50
 +
        '#12a3b4', // aqua40
 +
        '#00a78f', // teal40
 +
        '#00aa5e', // green40
 +
        '#81b532', // lime30
 +
        '#e3bc13', // yellow20
 +
        '#ffb000', // gold20
 +
        '#fe8500', // orange30
 +
        '#fe6100', // peach40
 +
        '#e62325', // red50
 +
        '#dc267f', // magenta50
 +
        '#c22dd5', // purple50
 +
        '#9753e1', // violet50
 +
        '#5a3ec8'  // indigo60
 +
        ];
 +
        function assignRandomColors(gradObj) {
 +
        var rA = Math.floor(colors.length * Math.random());
 +
        var rB = Math.floor(Math.random() * 3) + 3; // [3 - 5]
 +
        rB = (rA + (rB * (Math.random() < 0.5 ? -1 : 1)) + colors.length) % colors.length;
 +
        gradObj.stopA.setAttribute('stop-color', colors[rA]);
 +
        gradObj.stopB.setAttribute('stop-color', colors[rB]);
 +
        }
 +
        return {
 +
        setup: function() {
 +
          showingGrad1 = false;
 +
          grad1 = {
 +
          stopA: document.getElementById('stop1a'),
 +
          stopB: document.getElementById('stop1b'),
 +
          rect:  document.getElementById('rect1')
 +
          };
 +
          grad2 = {
 +
          stopA: document.getElementById('stop2a'),
 +
          stopB: document.getElementById('stop2b'),
 +
          rect:  document.getElementById('rect2')
 +
          };
 +
          grad1.rect.style.opacity = 0;
 +
          grad2.rect.style.opacity = 0;
 +
        },
 +
        next: function(t) {
 +
          t /= 1000;
 +
          var show, hide;
 +
          if (showingGrad1) {
 +
          hide = grad1;
 +
          show = grad2;
 +
          } else {
 +
          hide = grad2;
 +
          show = grad1;
 +
          }
 +
          showingGrad1 = !showingGrad1;
 +
          TweenMax.to(hide.rect, 0.55*t, {opacity: 0, delay: 0.2*t, ease: Sine.easeOut});
 +
          assignRandomColors(show);
 +
          TweenMax.to(show.rect, 0.65*t, {opacity: 1, ease: Sine.easeIn});
 +
        }
 +
        };
 +
      })();
 +
      //////////////////////////////
 +
      // Start
 +
      //////////////////////////////
 +
      bkgFunction();
 +
    </script>
 +
              <div style="position:absolute;top:100px;left:9%"><center><img style="height:120px;width:auto" alt="cover gif 1st added" src="https://static.igem.org/mediawiki/2019/2/2d/T--Fudan-TSI--coverCollaboration.gif" /></center></div>
 
           </div>
 
           </div>
 
       </div>
 
       </div>
Line 69: Line 456:
 
               <li class="onThisPageNav"><a href="#section2">Shanghai_YGQ</a></li>
 
               <li class="onThisPageNav"><a href="#section2">Shanghai_YGQ</a></li>
 
               <li class="onThisPageNav"><a href="#section3">Fudan</a></li>
 
               <li class="onThisPageNav"><a href="#section3">Fudan</a></li>
              <li class="onThisPageNav"><a href="#section4">SYSU-Medicine</a></li>
 
 
               <li class="onThisPageNav"><a href="#section5">SMMU-China</a></li>
 
               <li class="onThisPageNav"><a href="#section5">SMMU-China</a></li>
 +
              <li class="onThisPageNav"><a href="#section4">SYSU-Medicine</a></li>
 
               <li class="onThisPageNav"><a href="#section6">ECUST_China</a></li>
 
               <li class="onThisPageNav"><a href="#section6">ECUST_China</a></li>
              <li><a href="/Team:Fudan-TSI/Collaborations">Collaborations</a></li>
 
 
           </ul>
 
           </ul>
 
           <!-- main content of the page -->
 
           <!-- main content of the page -->
           <main>
+
           <main><article>
  
 
<div id="section1" class="section container scrolSpy">
 
<div id="section1" class="section container scrolSpy">
   <h2><a href="https://2019.igem.org/Team:Nanjing-China/Collaborations" target="_blank">Nanjing-China</a></h2>
+
   <h2><img src="https://static.igem.org/mediawiki/2019/5/53/T--Fudan-TSI--Collaboration--NJU-China.png" style="height:125px;width:auto;float:left"/><a href="https://2019.igem.org/Team:Nanjing-China/Collaborations" target="_blank">Nanjing-China</a></h2>
 
   <p class="flow-text">We communicated with team Nanjing-China about our project for the first time in May 2019 at the BUDS, Biology Undergraduate Development Symposium, through which we exchanged our experience about how to perform the experiment in practice. Then during the 6th Conference of China iGEMers Community, we made collaboration on modeling. We recommended them to assume that the phosphorus absorption rate was inversely proportional to the amount of phosphorus absorbed in the phosphorus absorption rate curve model. In return they suggested us combining the three process of transcription, reverse transcription and recombination in the modeling. We shared our guidebooks with them as well and received their positive feedbacks. We both made great progress through the interchange between each other.</p>
 
   <p class="flow-text">We communicated with team Nanjing-China about our project for the first time in May 2019 at the BUDS, Biology Undergraduate Development Symposium, through which we exchanged our experience about how to perform the experiment in practice. Then during the 6th Conference of China iGEMers Community, we made collaboration on modeling. We recommended them to assume that the phosphorus absorption rate was inversely proportional to the amount of phosphorus absorbed in the phosphorus absorption rate curve model. In return they suggested us combining the three process of transcription, reverse transcription and recombination in the modeling. We shared our guidebooks with them as well and received their positive feedbacks. We both made great progress through the interchange between each other.</p>
 
</div>
 
</div>
  
 
<div id="section2" class="section container scrolSpy">
 
<div id="section2" class="section container scrolSpy">
   <h2><a href="https://2019.igem.org/Team:Shanghai_YGQ/Collaborations" target="_blank">Shanghai_YGQ</a></h2>
+
   <h2><img src="https://static.igem.org/mediawiki/2019/0/02/T--Fudan-TSI--Collaboration--Shanghai_YGQ.png" style="height:125px;width:auto;float:left"/><a href="https://2019.igem.org/Team:Shanghai_YGQ/Collaborations" target="_blank">Shanghai_YGQ</a></h2>
 
   <p class="flow-text">This year, we also welcomed a high school team to our campus, Shanghai_YGQ. They set up their team based on the lab space at Fudan University and us two teams worked on the same floor of the building of life science. Because of the convenience of short the distance, we could exchange ideas with each other frequently. We offered them some advice on experiments, lab safety and some other details of the competition. We shared our guidebooks with them as well and introduced our experience in guidebook writing to them. Under our incentive, they also wrote a guidebook for future China high school teams to conduct their human practice. Correspondingly they showed us what nowadays high school students thought of synthetic biology, which helped with our public engagement human practice.</p>
 
   <p class="flow-text">This year, we also welcomed a high school team to our campus, Shanghai_YGQ. They set up their team based on the lab space at Fudan University and us two teams worked on the same floor of the building of life science. Because of the convenience of short the distance, we could exchange ideas with each other frequently. We offered them some advice on experiments, lab safety and some other details of the competition. We shared our guidebooks with them as well and introduced our experience in guidebook writing to them. Under our incentive, they also wrote a guidebook for future China high school teams to conduct their human practice. Correspondingly they showed us what nowadays high school students thought of synthetic biology, which helped with our public engagement human practice.</p>
 
</div>
 
</div>
  
 
<div id="section3" class="section container scrolSpy">
 
<div id="section3" class="section container scrolSpy">
   <h2><a href="https://2019.igem.org/Team:Fudan/Collaborations" target="_blank">Fudan</a></h2>
+
   <h2><img src="https://static.igem.org/mediawiki/2019/b/b6/T--Fudan-TSI--Collaboration--Fudan_ALTER.png" style="height:125px;width:auto;float:left"/><a href="https://2019.igem.org/Team:Fudan/Collaborations" target="_blank">Fudan</a></h2>
 
   <p class="flow-text">We kept close collaboration with team Fudan since we two teams were set up in January 2019. We shared our ideas and suggestions with each other. Besides, they gave us a sample of their plasmid containing the Tetracycline resistance gene to us. We provided our Nanodrop to them. We shared our guidebooks with them as well and received their positive feedbacks. The continuous communication between members of the two teams contributes to promoting respective projects.</p>
 
   <p class="flow-text">We kept close collaboration with team Fudan since we two teams were set up in January 2019. We shared our ideas and suggestions with each other. Besides, they gave us a sample of their plasmid containing the Tetracycline resistance gene to us. We provided our Nanodrop to them. We shared our guidebooks with them as well and received their positive feedbacks. The continuous communication between members of the two teams contributes to promoting respective projects.</p>
</div>
 
 
<div id="section4" class="section container scrolSpy">
 
  <h2><a href="https://2019.igem.org/Team:SMMU-China/Collaborations" target="_blank">SMMU-China</a></h2>
 
  <p class="flow-text">We communicated with team SYSU-Medicine in the 6<sup>th</sup> CCiC, where we inspired them to attempt to verify the feasibility of their project design in advance through modeling. We received their suggestions of explaining the meaning of stochastic simulation clearly in our modeling as well.</p>
 
 
</div>
 
</div>
  
 
<div id="section5" class="section container scrolSpy">
 
<div id="section5" class="section container scrolSpy">
   <h2><a href="https://2019.igem.org/Team:SYSU-Medicine/Collaborations" target="_blank">SYSU-Medicine</a></h2>
+
   <h2><img src="https://static.igem.org/mediawiki/2019/5/5f/T--Fudan-TSI--Collaboration--SMMU-China.png" style="height:125px;width:auto;float:left"/><a href="https://2019.igem.org/Team:SMMU-China/Collaborations" target="_blank">SMMU-China</a></h2>
 
   <p class="flow-text">We gave a sample of plasmids containing various transcription factors and promotors constructed by the 2017 iGEM team Fudan. We two teams exchanged our ideas about the design of projects.</p>
 
   <p class="flow-text">We gave a sample of plasmids containing various transcription factors and promotors constructed by the 2017 iGEM team Fudan. We two teams exchanged our ideas about the design of projects.</p>
 +
</div>
 +
 +
<div id="section4" class="section container scrolSpy">
 +
  <h2><img src="https://static.igem.org/mediawiki/2019/3/3a/T--Fudan-TSI--Collaboration--SYSUmedicine.png" style="height:125px;width:auto;float:left"/><a href="https://2019.igem.org/Team:SYSU-Medicine/Collaborations" target="_blank">SYSU-Medicine</a></h2>
 +
  <p class="flow-text">We communicated with team SYSU-Medicine in the 6<sup>th</sup> CCiC, where we inspired them to attempt to verify the feasibility of their project design in advance through modeling. We received their suggestions of explaining the meaning of stochastic simulation clearly in our modeling as well.</p>
 
</div>
 
</div>
  
 
<div id="section6" class="section container scrolSpy">
 
<div id="section6" class="section container scrolSpy">
   <h2><a href="https://2019.igem.org/Team:ECUST_China/Collaborations#main1_3" target="_blank">ECUST_China</a></h2>
+
   <h2><img src="https://static.igem.org/mediawiki/2019/c/c3/T--Fudan-TSI--Collaboration--ECUST-China.png" style="height:125px;width:auto;float:left"/><a href="https://2019.igem.org/Team:ECUST_China/Collaborations#main1_3" target="_blank">ECUST_China</a></h2>
 
   <p class="flow-text">We received valuable suggestions on the activity forms of Education and Public Engagement HP from them. In exchange, we offered them a protocol for reference to verify that their parts could work.</p>
 
   <p class="flow-text">We received valuable suggestions on the activity forms of Education and Public Engagement HP from them. In exchange, we offered them a protocol for reference to verify that their parts could work.</p>
 
</div>
 
</div>
Line 111: Line 497:
 
       do not edit below, if must BE CAREFUL
 
       do not edit below, if must BE CAREFUL
 
   //////////////////////////////////////////////////////-->
 
   //////////////////////////////////////////////////////-->
       </main></div><!-- end of side navigator and main of the page -->
+
       </article></main></div><!-- end of side navigator and main of the page -->
  
<!--Abstract on content page-->
 
      <div id="abstractContent" class="z-depth-2">
 
          <a href="#!"><img alt="project summary" src="https://static.igem.org/mediawiki/2018/9/96/T--Fudan--X.svg"></a>
 
          <div class="container">
 
              <h5 style="margin:0;padding:10px 0;">Project by Team:Fudan-TSI</h5>
 
              <p class="flow-text" style="margin:0">Mutation library generation is critical for biological and medical research, but current methods cannot mutate a specific sequence continuously without manual intervention. We hereby present a toolbox for <i>in vivo</i> continuous mutation library construction. First, the target DNA is transcribed into RNA. Next, our reverse transcriptase (RT) reverts RNA into cDNA, during which the target is randomly mutated by our RT's enhanced error-prone ability. Finally, the mutated version replaces the original sequence through recombination. These steps will be carried out iteratively, generating a random mutation library of the target with high efficiency as mutations accumulate along with bacterial growth. Our toolbox is orthogonal and provides a wide range of applications among various species. R-Evolution could mutate coding sequences and regulatory sequences, which enables the evolution of individual proteins or multiple targets at a time, promotes high-throughput research, and serves as a foundational advance to synthetic biology.
 
              </p>
 
          </div>
 
      </div>
 
 
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Latest revision as of 05:55, 16 November 2019

Collaborations | 2019 iGEM Team:Fudan-TSI


Collaborations

cover gif 1st added

Nanjing-China

We communicated with team Nanjing-China about our project for the first time in May 2019 at the BUDS, Biology Undergraduate Development Symposium, through which we exchanged our experience about how to perform the experiment in practice. Then during the 6th Conference of China iGEMers Community, we made collaboration on modeling. We recommended them to assume that the phosphorus absorption rate was inversely proportional to the amount of phosphorus absorbed in the phosphorus absorption rate curve model. In return they suggested us combining the three process of transcription, reverse transcription and recombination in the modeling. We shared our guidebooks with them as well and received their positive feedbacks. We both made great progress through the interchange between each other.

Shanghai_YGQ

This year, we also welcomed a high school team to our campus, Shanghai_YGQ. They set up their team based on the lab space at Fudan University and us two teams worked on the same floor of the building of life science. Because of the convenience of short the distance, we could exchange ideas with each other frequently. We offered them some advice on experiments, lab safety and some other details of the competition. We shared our guidebooks with them as well and introduced our experience in guidebook writing to them. Under our incentive, they also wrote a guidebook for future China high school teams to conduct their human practice. Correspondingly they showed us what nowadays high school students thought of synthetic biology, which helped with our public engagement human practice.

Fudan

We kept close collaboration with team Fudan since we two teams were set up in January 2019. We shared our ideas and suggestions with each other. Besides, they gave us a sample of their plasmid containing the Tetracycline resistance gene to us. We provided our Nanodrop to them. We shared our guidebooks with them as well and received their positive feedbacks. The continuous communication between members of the two teams contributes to promoting respective projects.

SMMU-China

We gave a sample of plasmids containing various transcription factors and promotors constructed by the 2017 iGEM team Fudan. We two teams exchanged our ideas about the design of projects.

SYSU-Medicine

We communicated with team SYSU-Medicine in the 6th CCiC, where we inspired them to attempt to verify the feasibility of their project design in advance through modeling. We received their suggestions of explaining the meaning of stochastic simulation clearly in our modeling as well.

ECUST_China

We received valuable suggestions on the activity forms of Education and Public Engagement HP from them. In exchange, we offered them a protocol for reference to verify that their parts could work.