Team:UNebraska-Lincoln/Basic Part

Parts

Basic Parts



Name Number Type Description Designer Length
SarA BBa_K3191100 Regulatory A transcriptional activator in the agr system in S. aureus. This binds and activates P2 and P3 promoters in the presence of AgrA. Logan Hauder 378
AgrC BBa_K3191110 Coding AgrC interacts with autoinducing peptides, triggering phosphorylation of AgrA in the agr system of S. aureus. This part is a modification of the agrC subunit in BBa_I746100 that includes an additional 16 amino acids at the N-terminus of the peptide. Logan Hauder 1293
AgrA BBa_K3191111 Coding AgrA activates P2 and P3 promoters in the agr system of S. aureus when phosphorylated by AgrC. This part is a modification of the agrA subunit in BBa_I746100 that includes an additional 30 amino acids at the N-terminus of the peptide. Logan Hauder 717
YbaQ Degron BBa_K3191200 Tag This part includes the YbaQ degron sequence with two stop codons added to the C-terminal end. Alexander Meyer 36
GakA BBa_K3191310 Coding Contains the sequence for gakA, the first of three subunits in the bacteriocin garvicin KS. Alexander Meyer 108
GakB BBa_K3191311 Coding Contains the sequence for gakB, the second of three subunits in the bacteriocin garvicin KS. Alexander Meyer 108
GakC BBa_K3191312 Coding Contains the sequence for gakC, the third of three subunits in the bacteriocin garvicin KS. Alexander Meyer 102
Novel Secretion Peptide NSP4 BBa_K3191320 Coding An N-terminal secretion tag for extracellular secretion of peptides in E. coli through the Sec-dependent pathway. Logan Hauder 60
P2 Promoter BBa_K3191400 Regulatory The P2 promoter is activated by AgrA in the agr system of S. aureus, transcribing genes downstream of the promoter in the presence of autoinducing peptides. This part is a modification of BBa_I746104, reintroducing about 90 missing bases in the intergenic sequence. Alexander Meyer 151



Composite Parts



Name Number Type Description Designer Length
pBAD + AgrC + AgrA + GFP with Multiple Cloning Site BBa_K3191101 Composite This part contains gakA, gakB, and gakC under the influence of a pBAD promoter. This encourages the production of garvicin KS in the presence of arabinose. Alexander Meyer 3372
pBAD + AgrC + AgrA + SarA + GFP BBa_K3191102 Composite Includes the agrC and agrA genes from the agr system in S. aureus under a pBAD promoter. Downstream, a gene for GFP is under the influence of a P2 promoter. This is designed so AIP detection triggers production of GFP. This part includes SarA immediately downstream of AgrA to improve P2 transcription. Logan Hauder 3776
SarA BBa_K3191103 Composite This part includes a ribosome binding site immediately upstream of sarA for cloning into the BBa_K3191101 multiple cloning site. Logan Hauder 396
pBAD + CheZ + YbaQ BBa_K3191201 Composite A YbaQ degron sequence is attached to cheZ to prevent overexpression, improving motility. These genes are placed downstream of a pBAD promoter, encouraging chemotaxis in the presence of arabinose. Alexander Meyer 974
pBAD + GarKS BBa_K3191301 Composite This part includes the YbaQ degron sequence with two stop codons added to the C-terminal end. Alexander Meyer 666
pBAD + GarKS + NSP4 BBa_K3191302 Composite This part contains gakA, gakB, and gakC under the influence of a pBAD promoter, encouraging the production of garvicin KS in the presence of arabinose. This part also includes a short secretion peptide attached to each subunit of garvicin KS to help with extracellular secretion. Alexander Meyer 846