Difference between revisions of "Team:Fudan-TSI/Team"

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     <title>2019 Team:Fudan-TSI Team</title>
 
     <title>2019 Team:Fudan-TSI Team</title>
 
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<div id="FudanTSIdivWrapper"><div id="FudanTSIBody">
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  <div id="emptyBar" style="position:relative;width: 100%;"></div><nav id="topNav" class="black z-depth-0_5"><div class="nav-wrapper"><div id="teamLogo" class="brand-logo"> <a href="/Team:Fudan-TSI" target="_self"><img alt="2019 team logo" src="https://static.igem.org/mediawiki/2019/d/d3/T--Fudan-TSI--HomepageLogo.gif"></a></div><ul id="nav-mobile" class="right"><!-- @@ --><li> <a id="navList" data-target="slide-out" class="waves-effect waves-light sidenav-trigger right"> <i class="fa fa-navicon" style="font-size: 24px"></i> </a></li></ul></div> </nav>
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      <p class="flow-text" style="width:100%;text-align:center"><span class="white-text">Team</span></p>
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                        <a href="/Team:Fudan-TSI" target="_self"><img alt="2019 team logo" src="https://static.igem.org/mediawiki/2019/3/3c/T--Fudan-TSI--Logo0.gif"></a>
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    </div></li>
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      <ul class="collapsible expandable">
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                        <li>
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        <li><span class="pageSidebar">Team: Fudan-TSI</span></li><li><div class="collapsible-header"><span class="pageSidebar">Project</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Description">Background</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Design">Design</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Experiments">Experiments</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Applied_Design">Applied design</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Judging">Judging</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Results</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate#ReverseTranscription">Reverse transcription</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate#Recombination">Recombination</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate">Demonstration</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Measurement">Measurement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Notebook">Notebook</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Model</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Model">Modeling</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Software">Software</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Hardware">Hardware</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Parts</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Basic_Part">Basic parts</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Composite_Part">Composite parts</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Improve">Part improvement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Part_Collection">Part collection</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Human practices</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Public_Engagement">Public engagement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Human_Practices#IntegratedHumanPractice">Integrated HP</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Collaborations">Collaborations</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Safety">Safety</a></li></ul></div></li><li><div class="collapsible-header active"><span class="pageSidebar">Team</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Team">Members</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Attributions">Attributions</a></li><li><a class="pageSidebar" href="https://2018.igem.org/Team:Fudan/Heritage" target=_blank>Heritage</a></li></ul></div></li>
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                    <p class="flow-text" style="width:100%;text-align:center"><span class="white-text">Members</span></p>
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        <li><a href="/Team:Fudan-TSI/Description">Background</a></li>
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        <li><a href="/Team:Fudan-TSI/Applied_Design">Applied Design</a></li>
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        <li><a href="/Team:Fudan-TSI/Experiments">Experiments</a></li>
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<li><div class="collapsible-header"><span>Results</span></div>
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        <li><a href="/Team:Fudan-TSI/Results#ReverseTranscription">Reverse Transcription</a></li>
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        <li><a href="/Team:Fudan-TSI/Results#Recombination">Recombination</a></li>
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        <li><a href="/Team:Fudan-TSI/Demonstrate">Demonstration</a></li>
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        <li><a href="/Team:Fudan-TSI/Measurement">Measurement</a></li>
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<li><div class="collapsible-header"><span>Parts</span></div>
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        <li><a href="/Team:Fudan-TSI/Basic_Part">Basic parts</a></li>
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              <div style="text-align:center;padding-top:80px"><center><img style="height:120px;width:auto" alt="cover team" src="https://static.igem.org/mediawiki/2019/a/aa/T--Fudan-TSI--coverTeam.gif" /></center></div>
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                        <span>We are Team:Fudan, a group of people with great diversity!</span>
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  <h2>Prxxxx</h2>
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                        <h2>Our team</h2>
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                        <p class="flow-text">We are Team:Fudan, a group of people with great diversity! Our team consists of eight dedicated members coming from myriad academic backgrounds and has a balanced female to male ratio. 2018 is our eighth year to represent our university participating in the iGEM competition, and we look forward to continuing in the years to come!</p>
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                                <img alt="2018 team yzj" src="https://static.igem.org/mediawiki/2018/1/11/T--Fudan--yzj.jpg">
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                            </div>
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                            <div class="col s12 l8">
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                                <h3>Zijie Yang</h3>
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                                <p class="flow-text">
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−
                                    <b>Advisor</b><br>
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                                    <b>Major in Clinical medicine</b><br>
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−
                                    Zijie was the leader of <a href="https://2017.igem.org/Team:Fudan" target="_blank">2017 Swords Team</a>. He uses his experience to guide us on our project. With his assistance, we planned out a concrete schedule with every step well organized. With his practical guidance in <a href="/Team:Fudan-TSI/Protocols" target="_blank">molecular cloning</a>, <a href="/Team:Fudan-TSI/Primers" target="_blank">primers</a> design, <a href="/Team:Fudan-TSI/Protocols" target="_blank">cell culture</a> and <a href="/Team:Fudan-TSI/Measurement" target="_blank">flow data analysis</a>, our experiments went well. He also helped us to start the <a href="/Team:Fudan-TSI/Measurement" target="_blank">FACS</a> Jazz machine whenever we need.
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                                </p>
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                            </div>
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                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l4">
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                                <img alt="2018 team yzy" src="https://static.igem.org/mediawiki/2018/c/cf/T--Fudan--yzy.jpg">
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                            </div>
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                            <div class="col s12 l8">
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                                <h3>Ziyan Yu</h3>
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                                <p class="flow-text">
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                                    <b>Team Leader</b><br>
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                                    <b>Major in Biology science</b><br>
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                                    As one of the two captains, Ziyan is responsible for all the big and small experimental things in the team. She never complains about the hardness of the work and always motivates us to overcome our challenges. She ensures that we get everyone's job <a href="/Team:Fudan-TSI/Notebook" target="_blank">done on time</a>. Most importantly, she genuinely cares about each of the members of the team and always makes our team atmosphere cheerful and optimistic.
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                                </p>
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                            </div>
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                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l4">
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                                <img alt="2018 team drr" src="https://static.igem.org/mediawiki/2018/6/62/T--Fudan--drr.jpg">
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                            </div>
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                            <div class="col s12 l8">
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                                <h3>Rongrong Du</h3>
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                                <p class="flow-text">
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                                    <b>Team Leader</b><br>
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                                    <b>Major in Biology Science</b><br>
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                                    Rongrong is the other captain, who is in charge of human practices and serves as the channels between other iGEM teams and us. Whenever there is a disagreement between the team members, she will always come forward to resolve it. Recently, due to some personal illness, she has to stay in the hospital. However, she carefully documented all the parts (<a href="/Team:Fudan-TSI/Basic_Part" target="_blank">basic parts</a>, <a href="/Team:Fudan-TSI/Composite_Part" target="_blank">composite parts</a>, <a href="/Team:Fudan-TSI/Part_Collection" target="_blank">part collection</a> and <a href="/Team:Fudan-TSI/Optimization" target="_blank">optimized parts</a>) we deposit to the BioBrick, while others were working in the lab.
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                                </p>
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                            </div>
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                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l4">
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                                <img alt="2018 team zcy" src="https://static.igem.org/mediawiki/2018/3/3d/T--Fudan--zcy.jpg">
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                            </div>
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                            <div class="col s12 l8">
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                                <h3>Chuyue Zhang</h3>
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                                <p class="flow-text">
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                                    <b>Experiments</b><br>
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                                    <b>Major in Biology Science</b><br>
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                                    Chuyue is junior, and we usually call her “little sister”. She learns fast and works tirelessly. She used to study overseas in Australia and America, and she is indispensable for the write-up of our wiki pages.
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                                </p>
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                            </div>
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                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l4">
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                                <img alt="2018 team mitchell wan" src="https://static.igem.org/mediawiki/2018/2/21/T--Fudan--Mitchell.jpg">
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                            </div>
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                            <div class="col s12 l8">
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                                <h3>Mitchell Wan</h3>
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                                <p class="flow-text">
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                                    <b>HP and Experiments</b><br>
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                                    <b>Major in Clinical medicine </b><br>
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−
                                    Mitchell holds a US passport but is studying in Fudan. Probably due to his early education background is different from us, he is always the person constantly curious and asking questions from fresh angles. He is a confident speaker and gave an excellent talk when we were participating <a href="/Team:Fudan-TSI/Collaborations" target="_blank">the Taiwan event</a>.
+
−
                                </p>
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                            </div>
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−
                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l3">
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                                <img alt="2018 team fjb" src="https://static.igem.org/mediawiki/2018/2/26/T--Fudan--fjb.jpg">
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                            </div>
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                            <div class="col s12 l9">
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                                <h3>Jingbo Fu</h3>
+
−
                                <p class="flow-text">
+
−
                                    <b>HP and Experiments</b><br>
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−
                                    <b>Major in Clinical medicine</b><br>
+
−
                                    Jingbo comes from a different University, the Second Military Medical University. He joined us last winter, he likes physical exercise and we are pleased to have a fitness enthusiast with us (to protect us) . He organized the interviews and trained Qibao Dwight High School students in the summer. He maintains a healthy living habits in daily life, and very nice to have him around.
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                                </p>
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                            </div>
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                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l3">
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                                <img alt="2018 team zyy" src="https://static.igem.org/mediawiki/2018/6/6b/T--Fudan--zyy.jpg">
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                            </div>
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                            <div class="col s12 l9">
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                                <h3>Yuyan Zeng</h3>
+
−
                                <p class="flow-text">
+
−
                                    <b>HP and Experiments</b><br>
+
−
                                    <b>Major in Biology Science</b><br>
+
−
                                    Yuyan has a unique understanding and pursuit of beauty. She provides useful advice to various aspects of the project. She is pragmatic in executing her experiments and always maintains a high standard for completing them. A must-have! By the way, she made \[our xx-min video](link to).
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                                </p>
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                            </div>
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                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l4">
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                                <img alt="2018 team zlw" src="https://static.igem.org/mediawiki/2018/2/28/T--Fudan--zlw.jpg">
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                            </div>
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                            <div class="col s12 l8">
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                                <h3>Lingwei Zhang</h3>
+
−
                                <p class="flow-text">
+
−
                                    <b>Modeling</b><br>
+
−
                                    <b>Major in Data Science</b><br>
+
−
                                    Lingwei changes his major from Biology Science to <a href="http://www.sds.fudan.edu.cn/wp/
+
−
" target="_blank">Data Science</a>, because he loves big data. He wants to solve human health problems by analyzing data. In our team, he greatly contributes to our <a href="/Team:Fudan-TSI/Model" target="_blank">Modelling</a> as he is quite skilled in Matlab programming.
+
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                                </p>
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                            </div>
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                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l4">
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                                <img alt="2018 team yff" src="https://static.igem.org/mediawiki/2018/d/d9/T--Fudan--yff.jpg">
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                            </div>
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                            <div class="col s12 l8">
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                                <h3>Fangfei Ye</h3>
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                                <p class="flow-text">
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−
                                    <b>Art design and HP</b><br>
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−
                                    <b>Major in Biology Science</b><br>
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−
                                    Fangfei has excellent enthusiasm for <a href="/Team:Fudan-TSI/Design_Intention" target="_blank">art design</a>, and her career goal is becoming a popularizer of science. In our team, she is involved in almost all parts of the project, not only art design but also HP. She is always disciplined in completing her tasks! Most importantly, she also helps maintain a lively team atmosphere!
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                                </p>
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                            </div>
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                        </div>
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                        <div class="row nameCard">
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                            <div class="col s12 l3">
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                                <img alt="2018 team Dr. Lu" src="https://static.igem.org/mediawiki/2018/d/d5/T--Fudan--ldr.jpg">
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                            </div>
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                            <div class="col s12 l9">
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                                <h3>Daru Lu</h3>
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                                <p class="flow-text">
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                                    <b>Primary PI</b><br>
+
−
                                    Professor Lu received his bachelor's degree in Bioengineering and his doctorate in Genetics. Since then, he has been studying in the fields of medical molecular genetics and human genetics. He is a vice dean of <a href="http://life.fudan.edu.cn/" target="_blank">the School of Life Sciences</a>, and helping us to secure the funding and handle other administrative matters.
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                                </p>
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                            </div>
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                        </div>
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  <h2>Prxxxx</h2>
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                        <div class="row nameCard">
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  <p class="flow-text">Ixxxxxject.</p>
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                            <div class="col s12 l3">
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  <p class="flow-text">Pxxxxx.</p>
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                                <img alt="2018 team Dr. Cai" src="https://static.igem.org/mediawiki/2018/a/a7/T--Fudan--cl.jpg">
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                            </div>
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                            <div class="col s12 l9">
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                                <h3>Liang Cai</h3>
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                                <p class="flow-text">
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−
                                    <b>Primary PI</b><br>
+
−
                                    Professor Cai was born in Haining, a beautiful city located in the eastern part of China. In 2012, he started <a href="https://actin.cn/" target="_blank">his laboratory</a> in Fudan, mainly studying epithelial morphogenesis and actin dynamics. He has been teaching four undergraduate courses in the past 3 years, using <a href="https://en.wikipedia.org/wiki/Active_learning" target="_blank">active learning</a> and <a href="https://en.wikipedia.org/wiki/Blended_learning" target="_blank">blended learning</a> approaches.
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                                </p>
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                        </div>
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                    </div>
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                    <div class="parallax-container">
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                        <div class="parallax" style="z-index: 100"><img alt="Fudan Univ" class="responsive-img" src="https://static.igem.org/mediawiki/2018/4/47/T--Fudan--fd.jpg"></div>
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                    </div>
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                    <div id="section2" class="section" style="width: 81%;margin: 70px auto 50px auto;">
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                        <h2>About our school</h2>
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                        <p class="flow-text">
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                            Fudan University, located in Shanghai, China, is one of the oldest and most prestigious universities in China. Its predecessor was founded in 1905, which was the first institution of higher education to be established by a Chinese person - Ma Xiangbo, S.J.
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                        </p>
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                        <p class="flow-text">
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                            The university's name was chosen from the Biography of Yuxia in the <a href="https://en.wikipedia.org/wiki/Book_of_Documents" target="_blank">Book of Documents</a>, where the two characters fù<img  alt="Fu" src="https://static.igem.org/mediawiki/2018/4/4f/T--Fudan--chinesefu.jpg" style="height: 23px;width: 23px;display: inline">(meaning: return) and dàn<img alt="Dan" src="https://static.igem.org/mediawiki/2018/2/28/T--Fudan--chinesedan.jpg" style="height: 23px;width: 23px;display: inline">(meaning: dawn) are found in the famous lines “Brilliant are the sunshine and moonlight, again the morning glory after the night”.
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                        </p>
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                        <p class="flow-text">
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                            Today, alumni of Fudan can be found in the United States, Japan, Australia, Canada, Taiwan, Hong Kong, ... all over the world. The inspiring words of Fudan have left a deep impression in the minds of the students who once were on its campus.
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                        </p>
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                    <div id="section3" class="section" style="width: 81%;margin: 70px auto 150px auto;">
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                        <h2>Our lab space</h2>
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                        <p class="flow-text">
+
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                            Professor Cai always encourages students to start their research early during their undergraduate study. After <a href="/Team:Fudan-TSI/Heritage" target="_blank">assembled the team</a>, we decided to follow <a href="https://2017.igem.org/Team:Fudan" target="_blank">2017</a> and carry out our iGEM project in his laboratory. His laboratory is using all modern approaches to study basic cell biology questions. With the ability to unlimitedly using a FACS Jazz machine and an epifluorescent microscope, his lab is optimal for performing our iGEM research!
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                        </p>
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                </main>
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  <h2>Prxxxx</h2>
−
            </div>
+
  <p class="flow-text">Ixxxxxject.</p>
 +
  <p class="flow-text">Pxxxxx.</p>
 +
</div>
  
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                    <h4 style="margin:0;padding:10px 0;">Project Summary</h4>
 
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                    <p class="flow-text" style="margin:0">Mutation library generation is critical for biological and medical research, but current methods cannot mutate a specific sequence continuously without manual intervention. Here we present a toolbox for <i>in vivo</i> continuous mutation library construction. First, the target DNA is transcribed into RNA. Next, our reverse transcriptase reverts RNA into cDNA, during which the target is randomly mutated by enhanced error-prone reverse transcription. Finally, the mutated version replaces the original sequence through recombination. These steps will be carried out iteratively, generating a random mutation library of the target with high efficiency as mutations accumulate along with bacterial growth. Our toolbox is orthogonal and provides a wide range of applications among various species. R-Evolution could mutate coding sequences and regulatory sequences, which enables the <i>in vivo</i> evolution of individual proteins or multiple targets at a time, promotes high-throughput research, and serves as a foundational advance to synthetic biology.
 
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              <h5 style="margin:0;padding:10px 0;">Project by Team:Fudan-TSI</h5>
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              <p class="flow-text" style="margin:0">Mutation library generation is critical for biological and medical research, but current methods cannot mutate a specific sequence continuously without manual intervention. We hereby present a toolbox for <i>in vivo</i> continuous mutation library construction. First, the target DNA is transcribed into RNA. Next, our reverse transcriptase (RT) reverts RNA into cDNA, during which the target is randomly mutated by our RT's enhanced error-prone ability. Finally, the mutated version replaces the original sequence through recombination. These steps will be carried out iteratively, generating a random mutation library of the target with high efficiency as mutations accumulate along with bacterial growth. Our toolbox is orthogonal and provides a wide range of applications among various species. R-Evolution could mutate coding sequences and regulatory sequences, which enables the evolution of individual proteins or multiple targets at a time, promotes high-throughput research, and serves as a foundational advance to synthetic biology.
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2019 Team:Fudan-TSI Team


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project summary
Project by Team:Fudan-TSI

Mutation library generation is critical for biological and medical research, but current methods cannot mutate a specific sequence continuously without manual intervention. We hereby present a toolbox for in vivo continuous mutation library construction. First, the target DNA is transcribed into RNA. Next, our reverse transcriptase (RT) reverts RNA into cDNA, during which the target is randomly mutated by our RT's enhanced error-prone ability. Finally, the mutated version replaces the original sequence through recombination. These steps will be carried out iteratively, generating a random mutation library of the target with high efficiency as mutations accumulate along with bacterial growth. Our toolbox is orthogonal and provides a wide range of applications among various species. R-Evolution could mutate coding sequences and regulatory sequences, which enables the evolution of individual proteins or multiple targets at a time, promotes high-throughput research, and serves as a foundational advance to synthetic biology.