Difference between revisions of "Team:Fudan-TSI/Team"
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</div></li> | </div></li> | ||
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<ul class="collapsible expandable"> | <ul class="collapsible expandable"> | ||
| − | <li>Team: Fudan-TSI</li> | + | <li class="onThisPageNav"><span>Team: Fudan-TSI</span></li> |
| − | <li><div class="collapsible-header">Project</div> | + | <li><div class="collapsible-header"><span>Project</span></div> |
<div class="collapsible-body"><ul> | <div class="collapsible-body"><ul> | ||
<li><a href="/Team:Fudan-TSI/Description">Background</a></li> | <li><a href="/Team:Fudan-TSI/Description">Background</a></li> | ||
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<div class="collapsible-body"><ul> | <div class="collapsible-body"><ul> | ||
<li><a href="/Team:Fudan-TSI/Results#ReverseTranscription">Reverse Transcription</a></li> | <li><a href="/Team:Fudan-TSI/Results#ReverseTranscription">Reverse Transcription</a></li> | ||
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<div class="collapsible-body"><ul> | <div class="collapsible-body"><ul> | ||
<li><a href="/Team:Fudan-TSI/Model">Modeling</a></li> | <li><a href="/Team:Fudan-TSI/Model">Modeling</a></li> | ||
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<div class="collapsible-body"><ul> | <div class="collapsible-body"><ul> | ||
<li><a href="/Team:Fudan-TSI/Public_Engagement">Education & Public engagement</a></li> | <li><a href="/Team:Fudan-TSI/Public_Engagement">Education & Public engagement</a></li> | ||
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| − | <li><div class="collapsible-header">Team</div> | + | <li><div class="collapsible-header"><span>Team</span></div> |
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<li><a href="/Team:Fudan-TSI/Team">Members</a></li> | <li><a href="/Team:Fudan-TSI/Team">Members</a></li> | ||
<li><a href="/Team:Fudan-TSI/Attributions">Attributions</a></li> | <li><a href="/Team:Fudan-TSI/Attributions">Attributions</a></li> | ||
<li><a href="https://2018.igem.org/Team:Fudan/Heritage" target=_blank>Heritage</a></li> | <li><a href="https://2018.igem.org/Team:Fudan/Heritage" target=_blank>Heritage</a></li> | ||
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<div id="figureBannerTitle" class="hide-on-small-only"> | <div id="figureBannerTitle" class="hide-on-small-only"> | ||
<h1>Members</h1> | <h1>Members</h1> | ||
| − | <p><span>We are Team:Fudan, a group of people with great diversity!</span></p> | + | <p class="flow-text"><span>We are Team:Fudan, a group of people with great diversity!</span></p> |
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<div class="hide-on-small-only"> | <div class="hide-on-small-only"> | ||
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<div id="section1" class="section" style="width: 70%;margin: 70px auto 150px auto; "> | <div id="section1" class="section" style="width: 70%;margin: 70px auto 150px auto; "> | ||
<h2>Our team</h2> | <h2>Our team</h2> | ||
| − | <p>We are Team:Fudan, a group of people with great diversity! Our team consists of eight dedicated members coming from myriad academic backgrounds and has a balanced female to male ratio. 2018 is our eighth year to represent our university participating in the iGEM competition, and we look forward to continuing in the years to come!</p> | + | <p class="flow-text">We are Team:Fudan, a group of people with great diversity! Our team consists of eight dedicated members coming from myriad academic backgrounds and has a balanced female to male ratio. 2018 is our eighth year to represent our university participating in the iGEM competition, and we look forward to continuing in the years to come!</p> |
<div class="row nameCard"> | <div class="row nameCard"> | ||
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<h3>Zijie Yang</h3> | <h3>Zijie Yang</h3> | ||
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<b>Advisor</b><br> | <b>Advisor</b><br> | ||
<b>Major in Clinical medicine</b><br> | <b>Major in Clinical medicine</b><br> | ||
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<h3>Ziyan Yu</h3> | <h3>Ziyan Yu</h3> | ||
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<b>Team Leader</b><br> | <b>Team Leader</b><br> | ||
<b>Major in Biology science</b><br> | <b>Major in Biology science</b><br> | ||
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<div class="col s12 l8"> | <div class="col s12 l8"> | ||
<h3>Rongrong Du</h3> | <h3>Rongrong Du</h3> | ||
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<b>Team Leader</b><br> | <b>Team Leader</b><br> | ||
<b>Major in Biology Science</b><br> | <b>Major in Biology Science</b><br> | ||
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<div class="col s12 l8"> | <div class="col s12 l8"> | ||
<h3>Chuyue Zhang</h3> | <h3>Chuyue Zhang</h3> | ||
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<b>Experiments</b><br> | <b>Experiments</b><br> | ||
<b>Major in Biology Science</b><br> | <b>Major in Biology Science</b><br> | ||
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<h3>Mitchell Wan</h3> | <h3>Mitchell Wan</h3> | ||
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<b>HP and Experiments</b><br> | <b>HP and Experiments</b><br> | ||
<b>Major in Clinical medicine </b><br> | <b>Major in Clinical medicine </b><br> | ||
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<h3>Jingbo Fu</h3> | <h3>Jingbo Fu</h3> | ||
| − | <p> | + | <p class="flow-text"> |
<b>HP and Experiments</b><br> | <b>HP and Experiments</b><br> | ||
<b>Major in Clinical medicine</b><br> | <b>Major in Clinical medicine</b><br> | ||
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<div class="col s12 l9"> | <div class="col s12 l9"> | ||
<h3>Yuyan Zeng</h3> | <h3>Yuyan Zeng</h3> | ||
| − | <p> | + | <p class="flow-text"> |
<b>HP and Experiments</b><br> | <b>HP and Experiments</b><br> | ||
<b>Major in Biology Science</b><br> | <b>Major in Biology Science</b><br> | ||
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<h3>Lingwei Zhang</h3> | <h3>Lingwei Zhang</h3> | ||
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<b>Modeling</b><br> | <b>Modeling</b><br> | ||
<b>Major in Data Science</b><br> | <b>Major in Data Science</b><br> | ||
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<div class="col s12 l8"> | <div class="col s12 l8"> | ||
<h3>Fangfei Ye</h3> | <h3>Fangfei Ye</h3> | ||
| − | <p> | + | <p class="flow-text"> |
<b>Art design and HP</b><br> | <b>Art design and HP</b><br> | ||
<b>Major in Biology Science</b><br> | <b>Major in Biology Science</b><br> | ||
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<h3>Daru Lu</h3> | <h3>Daru Lu</h3> | ||
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<b>Primary PI</b><br> | <b>Primary PI</b><br> | ||
Professor Lu received his bachelor's degree in Bioengineering and his doctorate in Genetics. Since then, he has been studying in the fields of medical molecular genetics and human genetics. He is a vice dean of <a href="http://life.fudan.edu.cn/" target="_blank">the School of Life Sciences</a>, and helping us to secure the funding and handle other administrative matters. | Professor Lu received his bachelor's degree in Bioengineering and his doctorate in Genetics. Since then, he has been studying in the fields of medical molecular genetics and human genetics. He is a vice dean of <a href="http://life.fudan.edu.cn/" target="_blank">the School of Life Sciences</a>, and helping us to secure the funding and handle other administrative matters. | ||
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<h3>Liang Cai</h3> | <h3>Liang Cai</h3> | ||
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<b>Primary PI</b><br> | <b>Primary PI</b><br> | ||
Professor Cai was born in Haining, a beautiful city located in the eastern part of China. In 2012, he started <a href="https://actin.cn/" target="_blank">his laboratory</a> in Fudan, mainly studying epithelial morphogenesis and actin dynamics. He has been teaching four undergraduate courses in the past 3 years, using <a href="https://en.wikipedia.org/wiki/Active_learning" target="_blank">active learning</a> and <a href="https://en.wikipedia.org/wiki/Blended_learning" target="_blank">blended learning</a> approaches. | Professor Cai was born in Haining, a beautiful city located in the eastern part of China. In 2012, he started <a href="https://actin.cn/" target="_blank">his laboratory</a> in Fudan, mainly studying epithelial morphogenesis and actin dynamics. He has been teaching four undergraduate courses in the past 3 years, using <a href="https://en.wikipedia.org/wiki/Active_learning" target="_blank">active learning</a> and <a href="https://en.wikipedia.org/wiki/Blended_learning" target="_blank">blended learning</a> approaches. | ||
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<div id="section2" class="section" style="width: 81%;margin: 70px auto 50px auto;"> | <div id="section2" class="section" style="width: 81%;margin: 70px auto 50px auto;"> | ||
<h2>About our school</h2> | <h2>About our school</h2> | ||
| − | <p> | + | <p class="flow-text"> |
Fudan University, located in Shanghai, China, is one of the oldest and most prestigious universities in China. Its predecessor was founded in 1905, which was the first institution of higher education to be established by a Chinese person - Ma Xiangbo, S.J. | Fudan University, located in Shanghai, China, is one of the oldest and most prestigious universities in China. Its predecessor was founded in 1905, which was the first institution of higher education to be established by a Chinese person - Ma Xiangbo, S.J. | ||
</p> | </p> | ||
| − | <p> | + | <p class="flow-text"> |
The university's name was chosen from the Biography of Yuxia in the <a href="https://en.wikipedia.org/wiki/Book_of_Documents" target="_blank">Book of Documents</a>, where the two characters fù<img alt="Fu" src="https://static.igem.org/mediawiki/2018/4/4f/T--Fudan--chinesefu.jpg" style="height: 23px;width: 23px;display: inline">(meaning: return) and dàn<img alt="Dan" src="https://static.igem.org/mediawiki/2018/2/28/T--Fudan--chinesedan.jpg" style="height: 23px;width: 23px;display: inline">(meaning: dawn) are found in the famous lines “Brilliant are the sunshine and moonlight, again the morning glory after the night”. | The university's name was chosen from the Biography of Yuxia in the <a href="https://en.wikipedia.org/wiki/Book_of_Documents" target="_blank">Book of Documents</a>, where the two characters fù<img alt="Fu" src="https://static.igem.org/mediawiki/2018/4/4f/T--Fudan--chinesefu.jpg" style="height: 23px;width: 23px;display: inline">(meaning: return) and dàn<img alt="Dan" src="https://static.igem.org/mediawiki/2018/2/28/T--Fudan--chinesedan.jpg" style="height: 23px;width: 23px;display: inline">(meaning: dawn) are found in the famous lines “Brilliant are the sunshine and moonlight, again the morning glory after the night”. | ||
</p> | </p> | ||
| − | <p> | + | <p class="flow-text"> |
Today, alumni of Fudan can be found in the United States, Japan, Australia, Canada, Taiwan, Hong Kong, ... all over the world. The inspiring words of Fudan have left a deep impression in the minds of the students who once were on its campus. | Today, alumni of Fudan can be found in the United States, Japan, Australia, Canada, Taiwan, Hong Kong, ... all over the world. The inspiring words of Fudan have left a deep impression in the minds of the students who once were on its campus. | ||
</p> | </p> | ||
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<div id="section3" class="section" style="width: 81%;margin: 70px auto 150px auto;"> | <div id="section3" class="section" style="width: 81%;margin: 70px auto 150px auto;"> | ||
<h2>Our lab space</h2> | <h2>Our lab space</h2> | ||
| − | <p> | + | <p class="flow-text"> |
Professor Cai always encourages students to start their research early during their undergraduate study. After <a href="/Team:Fudan-TSI/Heritage" target="_blank">assembled the team</a>, we decided to follow <a href="https://2017.igem.org/Team:Fudan" target="_blank">2017</a> and carry out our iGEM project in his laboratory. His laboratory is using all modern approaches to study basic cell biology questions. With the ability to unlimitedly using a FACS Jazz machine and an epifluorescent microscope, his lab is optimal for performing our iGEM research! | Professor Cai always encourages students to start their research early during their undergraduate study. After <a href="/Team:Fudan-TSI/Heritage" target="_blank">assembled the team</a>, we decided to follow <a href="https://2017.igem.org/Team:Fudan" target="_blank">2017</a> and carry out our iGEM project in his laboratory. His laboratory is using all modern approaches to study basic cell biology questions. With the ability to unlimitedly using a FACS Jazz machine and an epifluorescent microscope, his lab is optimal for performing our iGEM research! | ||
</p> | </p> | ||
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<a href="#!"><img alt="project summary" src="https://static.igem.org/mediawiki/2018/9/96/T--Fudan--X.svg"></a> | <a href="#!"><img alt="project summary" src="https://static.igem.org/mediawiki/2018/9/96/T--Fudan--X.svg"></a> | ||
<div class="container"> | <div class="container"> | ||
| − | < | + | <h4 style="margin:0;padding:10px 0;">Project Summary</h4> |
| − | <p style="margin: 0">Mutation library generation is critical for biological and medical research, but current methods cannot mutate a specific sequence continuously without manual intervention. Here we present a toolbox for <i>in vivo</i> continuous mutation library construction. First, the target DNA is transcribed into RNA. Next, our reverse transcriptase reverts RNA into cDNA, during which the target is randomly mutated by enhanced error-prone reverse transcription. Finally, the mutated version replaces the original sequence through recombination. These steps will be carried out iteratively, generating a random mutation library of the target with high efficiency as mutations accumulate along with bacterial growth. Our toolbox is orthogonal and provides a wide range of applications among various species. R-Evolution could mutate coding sequences and regulatory sequences, which enables the <i>in vivo</i> evolution of individual proteins or multiple targets at a time, promotes high-throughput research, and serves as a foundational advance to synthetic biology. | + | <p class="flow-text" style="margin:0">Mutation library generation is critical for biological and medical research, but current methods cannot mutate a specific sequence continuously without manual intervention. Here we present a toolbox for <i>in vivo</i> continuous mutation library construction. First, the target DNA is transcribed into RNA. Next, our reverse transcriptase reverts RNA into cDNA, during which the target is randomly mutated by enhanced error-prone reverse transcription. Finally, the mutated version replaces the original sequence through recombination. These steps will be carried out iteratively, generating a random mutation library of the target with high efficiency as mutations accumulate along with bacterial growth. Our toolbox is orthogonal and provides a wide range of applications among various species. R-Evolution could mutate coding sequences and regulatory sequences, which enables the <i>in vivo</i> evolution of individual proteins or multiple targets at a time, promotes high-throughput research, and serves as a foundational advance to synthetic biology. |
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</a><a href="http://www.yfc.cn/en/" target="_blank"><img class="col s3 m6 l3" style="padding: 0.15rem 0.9rem;" alt="Yunfeng Capital" src="https://static.igem.org/mediawiki/2018/e/e2/T--Fudan--yunfengLogo.png"> | </a><a href="http://www.yfc.cn/en/" target="_blank"><img class="col s3 m6 l3" style="padding: 0.15rem 0.9rem;" alt="Yunfeng Capital" src="https://static.igem.org/mediawiki/2018/e/e2/T--Fudan--yunfengLogo.png"> | ||
</a> | </a> | ||
| − | <h3 class="col s12" style="text-align: left; color: rgba(255, 255, 255, 0.8); font-size: | + | <h3 class="col s12" style="text-align: left; color: rgba(255, 255, 255, 0.8); font-size:12.5px">R-Evolution: an <i>in vivo</i> sequence-specific toolbox for continuous mutagenesis</h3> |
</div> | </div> | ||
<div id="usefulLinks" class="col m9 s12 row"> | <div id="usefulLinks" class="col m9 s12 row"> | ||
Revision as of 07:13, 17 September 2019
<script src="https://code.jquery.com/jquery-1.11.3.min.js"></script>
Members
Our team
We are Team:Fudan, a group of people with great diversity! Our team consists of eight dedicated members coming from myriad academic backgrounds and has a balanced female to male ratio. 2018 is our eighth year to represent our university participating in the iGEM competition, and we look forward to continuing in the years to come!
Zijie Yang
Advisor
Major in Clinical medicine
Zijie was the leader of 2017 Swords Team. He uses his experience to guide us on our project. With his assistance, we planned out a concrete schedule with every step well organized. With his practical guidance in molecular cloning, primers design, cell culture and flow data analysis, our experiments went well. He also helped us to start the FACS Jazz machine whenever we need.
Ziyan Yu
Team Leader
Major in Biology science
As one of the two captains, Ziyan is responsible for all the big and small experimental things in the team. She never complains about the hardness of the work and always motivates us to overcome our challenges. She ensures that we get everyone's job done on time. Most importantly, she genuinely cares about each of the members of the team and always makes our team atmosphere cheerful and optimistic.
Rongrong Du
Team Leader
Major in Biology Science
Rongrong is the other captain, who is in charge of human practices and serves as the channels between other iGEM teams and us. Whenever there is a disagreement between the team members, she will always come forward to resolve it. Recently, due to some personal illness, she has to stay in the hospital. However, she carefully documented all the parts (basic parts, composite parts, part collection and optimized parts) we deposit to the BioBrick, while others were working in the lab.
Chuyue Zhang
Experiments
Major in Biology Science
Chuyue is junior, and we usually call her “little sister”. She learns fast and works tirelessly. She used to study overseas in Australia and America, and she is indispensable for the write-up of our wiki pages.
Mitchell Wan
HP and Experiments
Major in Clinical medicine
Mitchell holds a US passport but is studying in Fudan. Probably due to his early education background is different from us, he is always the person constantly curious and asking questions from fresh angles. He is a confident speaker and gave an excellent talk when we were participating the Taiwan event.
Jingbo Fu
HP and Experiments
Major in Clinical medicine
Jingbo comes from a different University, the Second Military Medical University. He joined us last winter, he likes physical exercise and we are pleased to have a fitness enthusiast with us (to protect us) . He organized the interviews and trained Qibao Dwight High School students in the summer. He maintains a healthy living habits in daily life, and very nice to have him around.
Yuyan Zeng
HP and Experiments
Major in Biology Science
Yuyan has a unique understanding and pursuit of beauty. She provides useful advice to various aspects of the project. She is pragmatic in executing her experiments and always maintains a high standard for completing them. A must-have! By the way, she made \[our xx-min video](link to).
Lingwei Zhang
Modeling
Major in Data Science
Lingwei changes his major from Biology Science to Data Science, because he loves big data. He wants to solve human health problems by analyzing data. In our team, he greatly contributes to our Modelling as he is quite skilled in Matlab programming.
Fangfei Ye
Art design and HP
Major in Biology Science
Fangfei has excellent enthusiasm for art design, and her career goal is becoming a popularizer of science. In our team, she is involved in almost all parts of the project, not only art design but also HP. She is always disciplined in completing her tasks! Most importantly, she also helps maintain a lively team atmosphere!
Daru Lu
Primary PI
Professor Lu received his bachelor's degree in Bioengineering and his doctorate in Genetics. Since then, he has been studying in the fields of medical molecular genetics and human genetics. He is a vice dean of the School of Life Sciences, and helping us to secure the funding and handle other administrative matters.
Liang Cai
Primary PI
Professor Cai was born in Haining, a beautiful city located in the eastern part of China. In 2012, he started his laboratory in Fudan, mainly studying epithelial morphogenesis and actin dynamics. He has been teaching four undergraduate courses in the past 3 years, using active learning and blended learning approaches.
About our school
Fudan University, located in Shanghai, China, is one of the oldest and most prestigious universities in China. Its predecessor was founded in 1905, which was the first institution of higher education to be established by a Chinese person - Ma Xiangbo, S.J.
The university's name was chosen from the Biography of Yuxia in the Book of Documents, where the two characters fù
(meaning: return) and dàn
(meaning: dawn) are found in the famous lines “Brilliant are the sunshine and moonlight, again the morning glory after the night”.
Today, alumni of Fudan can be found in the United States, Japan, Australia, Canada, Taiwan, Hong Kong, ... all over the world. The inspiring words of Fudan have left a deep impression in the minds of the students who once were on its campus.
Our lab space
Professor Cai always encourages students to start their research early during their undergraduate study. After assembled the team, we decided to follow 2017 and carry out our iGEM project in his laboratory. His laboratory is using all modern approaches to study basic cell biology questions. With the ability to unlimitedly using a FACS Jazz machine and an epifluorescent microscope, his lab is optimal for performing our iGEM research!
Project Summary
Mutation library generation is critical for biological and medical research, but current methods cannot mutate a specific sequence continuously without manual intervention. Here we present a toolbox for in vivo continuous mutation library construction. First, the target DNA is transcribed into RNA. Next, our reverse transcriptase reverts RNA into cDNA, during which the target is randomly mutated by enhanced error-prone reverse transcription. Finally, the mutated version replaces the original sequence through recombination. These steps will be carried out iteratively, generating a random mutation library of the target with high efficiency as mutations accumulate along with bacterial growth. Our toolbox is orthogonal and provides a wide range of applications among various species. R-Evolution could mutate coding sequences and regulatory sequences, which enables the in vivo evolution of individual proteins or multiple targets at a time, promotes high-throughput research, and serves as a foundational advance to synthetic biology.