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− | <img src="https://static.igem.org/mediawiki/2019/a/ac/T--Marburg--logo.svg" class="logo" alt="Syntex Logo"> | + | <img src="https://static.igem.org/mediawiki/2019/a/ac/T--Marburg--logo.svg" |
+ | class="logo" | ||
+ | alt="Syntex Logo"> | ||
+ | </div> | ||
+ | <div style="margin-top: 11vh;"> | ||
+ | <section class="section"> | ||
+ | <h2 class="subtitle">Great things are not done by impulse, but by a series of small things brought together. – | ||
+ | Vincent van Gogh</h2> | ||
+ | <p> | ||
+ | This year we expanded the Marburg Collection from 2018 with 55 new parts to the Marburg Collection 2.0. With | ||
+ | our | ||
+ | developed workflow we could characterize our parts and compare them with a second measurement method: FACs. We | ||
+ | added two new features for genome engineering of cyanobacteria: a CRISPR/cpf1 guided knockout system as well | ||
+ | as | ||
+ | a modularized assembly of repair templates for the knock in of genes (M.E.G.A. expansion). This includes | ||
+ | integration sites that target conventional neutral sites in cyanobacteria but we also rationally designed two | ||
+ | novel integration sites based on RNA-seq data. Additionally we offer the first MoClo compatible shuttle vector | ||
+ | for <a href="https://2019.igem.org/Team:Marburg/Basic_Part">cyanobacteria</a> and characterized gene | ||
+ | expression | ||
+ | based on that origin of replication. We used our new shuttle vector to build standardized devices for the | ||
+ | characterization of BioBricks in cyanobacterial chassis to improve the reproducibility of results and to | ||
+ | simplify large scale assemblies. For this we used placeholders, a novel part type that aids in the | ||
+ | construction | ||
+ | of a larger set of parts by reducing the involved cost and workload significantly. Additionally we tested our | ||
+ | toolbox with PCC 7942 to show that the Marburg Collection 2.0 is also working with similar cyanobacterias. We | ||
+ | offer free access to the data of our characterization, enabling the iGEM community and scientists to choose | ||
+ | the | ||
+ | parts based on this data. To improve the measurement method applicable for cyanobacteria we focused on | ||
+ | measurements via luminescence reporters over fluorescence reporters, because of the fact that cyanobacteria | ||
+ | emmit autofluorescence. This way our results are way more accurate, because of the reduced background noise. | ||
+ | The | ||
+ | higher accuracy is obviously visible during the measurement of our parts, where we could see a difference of | ||
+ | 5x10<sup>5</sup> between the background noise and the signal, which implements that already a small amount of | ||
+ | sample has a more intensive signal. | ||
+ | <br><br> | ||
+ | Hereby, we want to encourage the community of young scientists to work with the fastest phototrophic organism | ||
+ | Synechococcus elongatus UTEX 2973 because of its high relevance for biotechnological applications. | ||
+ | </p> | ||
+ | </section> | ||
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Revision as of 17:21, 8 December 2019
A C H I E V E M E N T S
Great things are not done by impulse, but by a series of small things brought together. – Vincent van Gogh
This year we expanded the Marburg Collection from 2018 with 55 new parts to the Marburg Collection 2.0. With
our
developed workflow we could characterize our parts and compare them with a second measurement method: FACs. We
added two new features for genome engineering of cyanobacteria: a CRISPR/cpf1 guided knockout system as well
as
a modularized assembly of repair templates for the knock in of genes (M.E.G.A. expansion). This includes
integration sites that target conventional neutral sites in cyanobacteria but we also rationally designed two
novel integration sites based on RNA-seq data. Additionally we offer the first MoClo compatible shuttle vector
for cyanobacteria and characterized gene
expression
based on that origin of replication. We used our new shuttle vector to build standardized devices for the
characterization of BioBricks in cyanobacterial chassis to improve the reproducibility of results and to
simplify large scale assemblies. For this we used placeholders, a novel part type that aids in the
construction
of a larger set of parts by reducing the involved cost and workload significantly. Additionally we tested our
toolbox with PCC 7942 to show that the Marburg Collection 2.0 is also working with similar cyanobacterias. We
offer free access to the data of our characterization, enabling the iGEM community and scientists to choose
the
parts based on this data. To improve the measurement method applicable for cyanobacteria we focused on
measurements via luminescence reporters over fluorescence reporters, because of the fact that cyanobacteria
emmit autofluorescence. This way our results are way more accurate, because of the reduced background noise.
The
higher accuracy is obviously visible during the measurement of our parts, where we could see a difference of
5x105 between the background noise and the signal, which implements that already a small amount of
sample has a more intensive signal.
Hereby, we want to encourage the community of young scientists to work with the fastest phototrophic organism
Synechococcus elongatus UTEX 2973 because of its high relevance for biotechnological applications.