Difference between revisions of "Team:Calgary/Safety"

 
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<h2 class="page-subtitle">Team &nbsp;&nbsp;/&nbsp;&nbsp; <span class="emphasis">Safety</span></h2>
 
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<h1>Safety in the project</h1>
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<h1>In Project Design</h1>
 
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               <p><span class="person-emphasis">Craig Shand</span>, <span class="company-emphasis">Co-owner and operator of Shand Farms Ltd. and an agronomist with Chinook Agronomists Inc.</span>, helped us tremendously at the beginning of our research period by giving us vital insights into how our project would affect the lives of Canadian farmers. </p>
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               <p>Our team took the safety implications of our project seriously, and thus considered various factors to ensure the safest conditions for our project. During the course of the season, our team utilized <i>Escherichia coli </i> strains BL21 (DE3) and DH5α. These strains are both non-pathogenic and are classified as Biosafety Level 1 (BSL-1) (ATCC, 2016). Additionally, our team used two fungal species, <i> Sclerotinia sclerotiorum</i> and <i>Pestalotiopsis microspora</i>. Both species are non-pathogenic to humans and also classified as BSL-1 (ATCC, 2016). The fungal species are spore-forming, so we completed the additional safety Check-In form as required by the iGEM safety committee. Our lab is also a certified BSL-2 lab, allowing us to work with the strains of <i>E. coli </i> and the two fungal species. </p>
              <p><span class="person-emphasis">Randall Weselake</span>, <span class="company-emphasis">Professor Emeritus in the Department of Agriculture, Food, and Nutritional Science at the University of Alberta</span>, used his years of experience in commercial oil processing to provide feedback on how our project could be scaled up to an industrial size.</p>
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              <p><span class="person-emphasis">Dr. Veronique Barthet</span>, <span class="company-emphasis">Research Scientists at the Canadian Grain Commission (CGC)</span>, was an excellent resource on oilseed processing, having served as a research scientist at the CGC for the last 19 years.</p>
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                <p><span class="person-emphasis">Angela Brackenreed</span>, <span class="company-emphasis">agronomy specialist at the Alberta Canola Council</span>, informed us on the current procedures that canola farmers use to mitigate the occurance of green seed in their crops.</p>
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                    <img style="width:33%" src="https://static.igem.org/mediawiki/2018/8/89/T--Calgary--LabSafety1.png">
                <p><span class="person-emphasis">Kyle Makila, Darren Walkey, Peter Waldner</span>, <span class="company-emphasis">senior staff at Pleasant Valley Oil Mills</span>, gave us a look into how oil processing companies function.</p>
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                <p><span class="person-emphasis">Dallas Gade</span>, <span class="company-emphasis">Manager of Engineering at Richardson Oilseed</span>, was kind enough to respond to our cold-calling attempts and arranged for us to meet with his team in person at Richardson’s processing plant in Lethbridge. Our meeting gave us a lot of insight into the economics of the canola industry and the subtle nuances of the oil purification process.</p>
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                <p><span class="person-emphasis">Ward Toma</span>, <span class="company-emphasis">General Manager of Alberta Canola Producers Commission </span></p>
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<h1>Safety in the Lab</h1>
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                <p><span class="person-emphasis">David Bailey</span>, <span class="company-emphasis">CEO of Genome Alberta</span> ...</p>
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                <p><span class="person-emphasis">Anita Ludwar</span>, <span class="company-emphasis">Business Developments Operations at Genome Alberta</span>, ...</p>
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                <p><span class="person-emphasis">Patrick Wu</span>, <span class="company-emphasis">Life Science and Synthetic Biology Marketing Consultant</span>, was kind enough to watch our presentation and offer constructive criticism as to how to sell our narrative.</p:
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                <p><span class="person-emphasis">Dr. Gijs van Rooijen</span>, <span class="company-emphasis">Chief Scientific Officer at Genome Alberta</span>, having over 20 patents to his name, helped us understand the process of commercializing an agricultural biotechnology.</p>
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<h1>General Wet Lab Support</h1>
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              <p><span class="person-emphasis">Dr. Mary Reid</span>, <span class="company-emphasis">Professor of Ecology & Evolutionary Biology at the University of Calgary</span>, aided us in our ideation process.</p>
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                <p>There were also safety considerations in the specific design of our project. Though bacteria is directly involved in the protein production process, the final consumer product has minimal risk of contamination from bacterial components. First, the protein produced from the <i>E. coli </i> undergoes His-tag purification before being incorporated into the emulsion system. This greatly reduces the chances of bacterial contaminants coming into contact with the oil or the chlorophyll. Moreover, even if minute bacterial contamination does occur, the oil-in-water emulsion in itself prevents any bacterial or protein components from entering the oil phase. Surfactants stabilize the emulsion system, and function as a barrier to further prevent protein entry into the oil phase. In combination, these factors have allowed us to ensure that the final consumer product is safe for use. </p>
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                <p>The application of pheophorbide as a fungicide was also carefully considered to ensure minimal impact to the general public and environment. Pheophorbide a is a natural catabolite of chlorophyll produced in plants. This means that although fungi are negatively impacted by exposure to pheophorbide a under high light conditions, the plants themselves are not affected due to endogenous safety mechanisms against pheophorbide’s cytotoxic capabilities. Additionally, our application of pheophorbide a as a fungicide has minimal effect on humans. After irradiation with light, it loses its cytotoxic ability, making it an ideal fungicide safe for human use and consumption (Gheewala, Skwor, & Munirathinam, 2018). Due to these reasons, we believe pheophorbide’s risk is relatively low. However, we would need to confirm that it does not pose any threat to other animals and insects in the environment before experimentation moves beyond contained laboratory conditions. </p>
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<h1>Chlorophyll Extraction</h1>
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<h1>In the Lab</h1>
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              <p><span class="person-emphasis">Dr. Raymond Turner</span>, <span class="company-emphasis">Professor of Biochemistry at the University of Calgary</span>, provided feedback on our proposed emulsion system and supported us in the design of our genetic circuit, particularly in the design of the inducible promotor.</p>
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                <p><span class="person-emphasis">Dr. Marie Elizabeth Fraser</span>, <span class="company-emphasis">Professor of Biochemistry at the University of Calgary</span>, helped us that our idea of using a biofilm matrix with chlorophyll binding proteins was not feasible to for chlorophyll extraction. Through our meeting with her, we were able to pivot to an emulsion system instead.</p>
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                <p><span class="person-emphasis">Dr. Marcus Samuel</span>, <span class="company-emphasis">Associate Professor and Director of the Biological Sciences at the University of Calgary</span>, was a crucial factor in our choice to pursue the green seed problem. His work in developing transgenic canola plants to be resistant to green seed is what initially sparked our curiosity in the subject.</p>
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                <p><span class="person-emphasis">Dr. Ian Lewis</span>, <span class="company-emphasis">Assistant Professor at the University of Calgary</span>, helped us understand the difficulties of working with recombitant proteins and design factors we would have to consider when designing our chlorophyll binding protein.</p>
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                <p><span class="person-emphasis">Dr. Gordon Chua</span>, <span class="company-emphasis">Associate Professor and is the Associate Head of Operations in the Department of Biological Sciences</span>, met with us a few times in the early ideation stages of our project to help us determine how synthetic biology can tackle the green seed problem.</p>
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              <p><span class="person-emphasis">Dr. Joe Harrison</span>, <span class="company-emphasis">Assistant Professor in the Department of Biological Sciences</span>, helped us realize that biofilms would not be the best approach to take, and we subsequently changed the direction of our project to utilize emulsions instead.</p>
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<h1>Chlorophyll Repurposing</h1>
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              <p><span class="person-emphasis">Dr. Ronald Moore</span>, <span class="company-emphasis">Professor of Surgery and Oncology at the University of Alberta</span>, provided us with a wealth of knowledge when we spoke with him about the use of pheophorbide in experimental photodynamic therapies.</p>
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              <p><span class="person-emphasis">Dr. Heather Addy</span>, <span class="company-emphasis">Mycologist and Professor in the Department of Biological Sciences at the University of Calgary</span>, was invaluable in our exploration of pheophorbide's potential application as an anti-fungal agent.</p>
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              <p><span class="person-emphasis">Fran Cusack</span>, <span class="company-emphasis">Biological Science Technician at the University of Calgary</span>, was gracious enough to supply us with fungal samples,  <i>Pestalotiopsis microspora</i> and <i>Sclerotinia sclerotiorum</i>, media plates for culturing those species, as well as, the knowledge needed to culture fungi. Without Fran's help, we would not have been able to study pheophorbide's potential application as an anti-fungal agent.</p>
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<h1>Dry Lab</h1>
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              <p><span class="person-emphasis">Dr. Kartikeya Murari</span>, <span class="company-emphasis">Assistant Professor in the Department of Electrical and Computer Engineering at the University of Calgary</span>, was approached for help with Cameras for Mean Green Machine. He helped explain project requirements both for standardizing conditions and considerations for working with low-level camera firmware.</p>
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              <p><span class="person-emphasis">Dr. David Anderson</span>, <span class="company-emphasis">Instructor in the Department of Biochemistry and Molecular Biology at the University of Calgary</span>, advised us on how to model the molecules involved in our project using cutting edge supercomputational platforms and molecular simulation systems.</p>
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<h1>Entrepreneurship</h1>
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              <p><span class="person-emphasis">Elisa Park</span>, <span class="company-emphasis">Manager of Health Innovation at the Hunter Hub for Entrepreneurial Thinking</span>, provided us with entrepreneurial resources to aid in the business aspects of our project.</p>
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          <p><span class="person-emphasis">Noren Howg</span>, <span class="company-emphasis">Legal Associate at Bennett Jones</span>, helped us strategize how we could keep the patentable aspects of our project confidential leading up to our first public disclosure at the iGEM Jamboree in Boston, MA.</p>
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              <p><span class="person-emphasis">Erin Kulhawy</span>, <span class="company-emphasis">Innovation Manager in Life Sciences at the Life Sciences Innovation Hub (LSIH)</span>, acted a liason between the team and LSIH, providing feedback on our project design and its commercial feasability. </p>
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<h1>Education and Outreach</h1>
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          <p><span class="person-emphasis">Alyssa Lam</span>, <span class="company-emphasis">Community Engagement Specialist at the Life Science Innovation Hub (LSIH)</span>, opened a line of communication with Innovate Calgary and the LSIH, allowing us to get an insider's view as to how the LSIH supports local biotech startups. Alyssa was also kind enough to let us spread our love for science at their "Bacteria Night" event.</p>
 
              <p><span class="person-emphasis">John Pye</span>, <span class="company-emphasis">Public Programmer at Telus SPARK</span>, let us share our passion for science at Telus SPARK's Adult Night in August.</p>
 
 
                
 
                
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                <p>At the beginning of the project all team members, mentors, and Principal Investigators had to complete lab safety courses developed by the <a class="info-link" href="https://www.ucalgary.ca/safety/" target=“_blank”>University of Calgary Environment Health and Safety (EHS)</a> services to start work in the lab. These courses included occupational health and safety, laboratory safety, hazard assessment, incident reporting and investigation, spill response, biosafety, and WHMIS. By completing these courses, everyone on the team was equipped to work safely in the lab and were able to handle incidents or hazards appropriately if anything were to occur.  Additionally, the <a class="info-link" href="https://www.ucalgary.ca/safety/health-safety-committees/biosafety" target=“_blank”>University of Calgary Biosafety Committee</a>outlines specific guidelines for following safe biological laboratory practices. Throughout the project, all team members observed and adhered to these guidelines during our experimental work. </p>
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<div class="header-area">
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<h1>References</h1>
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<p class="hangingindent">Gheewala, T., Skwor, T., & Munirathinam, G. (2018). Photodynamic therapy using pheophorbide and 670 nm LEDs exhibits anti-cancer effects in-vitro in androgen dependent prostate cancer. Photodiagnosis and Photodynamic Therapy, 21, 130–137. https://doi.org/10.1016/J.PDPDT.2017.10.026
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{{Calgary/Footer}}

Latest revision as of 03:28, 13 December 2019

Safety

In Project Design

Our team took the safety implications of our project seriously, and thus considered various factors to ensure the safest conditions for our project. During the course of the season, our team utilized Escherichia coli strains BL21 (DE3) and DH5α. These strains are both non-pathogenic and are classified as Biosafety Level 1 (BSL-1) (ATCC, 2016). Additionally, our team used two fungal species, Sclerotinia sclerotiorum and Pestalotiopsis microspora. Both species are non-pathogenic to humans and also classified as BSL-1 (ATCC, 2016). The fungal species are spore-forming, so we completed the additional safety Check-In form as required by the iGEM safety committee. Our lab is also a certified BSL-2 lab, allowing us to work with the strains of E. coli and the two fungal species.



There were also safety considerations in the specific design of our project. Though bacteria is directly involved in the protein production process, the final consumer product has minimal risk of contamination from bacterial components. First, the protein produced from the E. coli undergoes His-tag purification before being incorporated into the emulsion system. This greatly reduces the chances of bacterial contaminants coming into contact with the oil or the chlorophyll. Moreover, even if minute bacterial contamination does occur, the oil-in-water emulsion in itself prevents any bacterial or protein components from entering the oil phase. Surfactants stabilize the emulsion system, and function as a barrier to further prevent protein entry into the oil phase. In combination, these factors have allowed us to ensure that the final consumer product is safe for use.

The application of pheophorbide as a fungicide was also carefully considered to ensure minimal impact to the general public and environment. Pheophorbide a is a natural catabolite of chlorophyll produced in plants. This means that although fungi are negatively impacted by exposure to pheophorbide a under high light conditions, the plants themselves are not affected due to endogenous safety mechanisms against pheophorbide’s cytotoxic capabilities. Additionally, our application of pheophorbide a as a fungicide has minimal effect on humans. After irradiation with light, it loses its cytotoxic ability, making it an ideal fungicide safe for human use and consumption (Gheewala, Skwor, & Munirathinam, 2018). Due to these reasons, we believe pheophorbide’s risk is relatively low. However, we would need to confirm that it does not pose any threat to other animals and insects in the environment before experimentation moves beyond contained laboratory conditions.

In the Lab

At the beginning of the project all team members, mentors, and Principal Investigators had to complete lab safety courses developed by the University of Calgary Environment Health and Safety (EHS) services to start work in the lab. These courses included occupational health and safety, laboratory safety, hazard assessment, incident reporting and investigation, spill response, biosafety, and WHMIS. By completing these courses, everyone on the team was equipped to work safely in the lab and were able to handle incidents or hazards appropriately if anything were to occur. Additionally, the University of Calgary Biosafety Committeeoutlines specific guidelines for following safe biological laboratory practices. Throughout the project, all team members observed and adhered to these guidelines during our experimental work.

References

Gheewala, T., Skwor, T., & Munirathinam, G. (2018). Photodynamic therapy using pheophorbide and 670 nm LEDs exhibits anti-cancer effects in-vitro in androgen dependent prostate cancer. Photodiagnosis and Photodynamic Therapy, 21, 130–137. https://doi.org/10.1016/J.PDPDT.2017.10.026