Difference between revisions of "Team:Fudan-TSI/Notebook"

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{{Fudan-TSI}}<!-- jquery loaded by HQ 1.12.4 -->
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<style>
 
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/* DEFAULT WIKI SETTINGS */
 
/* DEFAULT WIKI SETTINGS */
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/**************************************************************************************************************************************************************************************************/
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#home_logo, #sideMenu { display:none; }
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  #content { margin-left: 0; padding:0px; width:100%;}
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#sideMenu, #top_title, .patrollink {display:none;}
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  .judges-will-not-evaluate { border: 4px solid #e4dede; padding: 2% !important; width: 92%!important; }
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#content { margin-left:0px; margin-top:-7px; padding:0px; width:100%;}
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/* css clean * */
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#bodyContent h1, #bodyContent h2, #bodyContent h3, #bodyContent h4, #bodyContent h5 { margin-bottom: 0px; }
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  #FudanTSIBody li { list-style: none; }
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#bodyContent a[href ^="https://"], .link-https { padding-right:0px;}
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    </style>
−
+
    <title>Notebook | 2019 iGEM Team:Fudan-TSI</title>
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</head>
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+
<body>
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<div id="FudanTSIdivWrapper"><div id="FudanTSIBody">
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/**************************************************************************************************************************************************************************************************/
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  <header>
−
/* MENU */
+
  <div id="emptyBar" style="position:relative;width: 100%;"></div><nav id="topNav" class="black z-depth-0_5"><div class="nav-wrapper"><div id="teamLogo" class="brand-logo"> <a href="/Team:Fudan-TSI" target="_self"><img alt="2019 team logo" src="https://static.igem.org/mediawiki/2019/d/d3/T--Fudan-TSI--HomepageLogo.gif"></a></div><ul id="nav-mobile" class="right">
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/**************************************************************************************************************************************************************************************************/
+
    <li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown1">Project</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown2">Results</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown3">Model</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown4">Parts</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown5">Human&nbsp;practices</a></li><li class="hide-on-med-and-down"><a class="dropdown-trigger" data-target="dropdown6">Team</a></li>
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    <li class="hide-on-med-and-down"><a href="/Team:Fudan-TSI/Judging">Judging</a></li>
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/*wrapping for the menu*/
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    <li> <a id="navList" data-target="slide-out" class="waves-effect waves-light sidenav-trigger right"> <i class="fa fa-navicon" style="font-size: 24px"></i> </a></li></ul></div> </nav>
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.igem_2019_team_menu {  
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background-color:#cecece;
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  <ul id="dropdown1" class="dropdown-content">
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border-left: 1px solid #635d5d;
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      <li><a href="/Team:Fudan-TSI/Description">Background</a></li>
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float:right;
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      <li><a href="/Team:Fudan-TSI/Design">Design</a></li>
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height:100vh;
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      <li><a href="/Team:Fudan-TSI/Experiments">Experiments</a></li>
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      <li><a href="/Team:Fudan-TSI/Applied_Design">Applied&nbsp;design</a></li>
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  </ul>
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overflow-x: hidden;
+
  <ul id="dropdown2" class="dropdown-content">
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padding:0px;
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      <li><a href="/Team:Fudan-TSI/Demonstrate#ReverseTranscription">Reverse&nbsp;transcription</a></li>
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position:fixed;
+
      <li><a href="/Team:Fudan-TSI/Demonstrate#Recombination">Recombination</a></li>
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      <li><a href="/Team:Fudan-TSI/Demonstrate">Demonstration</a></li>
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text-align:left;
+
      <li><a href="/Team:Fudan-TSI/Measurement">Measurement</a></li>
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width: 15%;  
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      <li><a href="/Team:Fudan-TSI/Notebook">Notebook</a></li>
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}
+
  </ul>
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+
  <ul id="dropdown3" class="dropdown-content">
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/*controlling menu visibility*/
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      <li><a href="/Team:Fudan-TSI/Model">Modeling</a></li>
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.igem_2019_team_menu.displaying_menu{
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      <li><a href="/Team:Fudan-TSI/Hardware">Hardware</a></li>
−
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+
  <ul id="dropdown4" class="dropdown-content">
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/*links in the menu*/
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      <li><a href="/Team:Fudan-TSI/Basic_Part">Basic&nbsp;parts</a></li>
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.igem_2019_team_menu  a {
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      <li><a href="/Team:Fudan-TSI/Composite_Part">Composite&nbsp;parts</a></li>
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      <li><a href="/Team:Fudan-TSI/Improve">Part&nbsp;improvement</a></li>
−
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      <li><a href="/Team:Fudan-TSI/Part_Collection">Part&nbsp;collection</a></li>
−
}
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+
  <ul id="dropdown5" class="dropdown-content">
−
/*images in the menu*/
+
      <li><a href="/Team:Fudan-TSI/Public_Engagement">Public&nbsp;engagement</a></li>
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.igem_2019_team_menu img {
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      <li><a href="/Team:Fudan-TSI/Human_Practices#IntegratedHumanPractice">Integrated&nbsp;HP</a></li>
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width:100%;
+
      <li><a href="/Team:Fudan-TSI/Collaborations">Collaborations</a></li>
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      <li><a href="/Team:Fudan-TSI/Safety">Safety</a></li>
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/*level 1 menu items*/
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.igem_2019_team_menu .menu_item {
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      <li><a href="/Team:Fudan-TSI/Team">Members</a></li>
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      <li><a href="/Team:Fudan-TSI/Attributions">Attributions</a></li>
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    border-bottom: 1px solid #635d5d;
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      <li><a href="/Team:Fudan-TSI/Team#Acknowledge">Acknowledge</a></li>
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      <li><a href="/Team:Fudan-TSI/Heritage">Heritage</a></li>
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/* submenu icon  "-"*/
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+
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+
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/*general styling*/
+
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.igem_2019_team_content .igem_2019_team_column_wrapper h6 { font-size: 130%;}
+
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/*titles h3, h3, h5, h6 */
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.igem_2019_team_content .igem_2019_team_column_wrapper h3,
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.igem_2019_team_content .igem_2019_team_column_wrapper h4,
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.igem_2019_team_content .igem_2019_team_column_wrapper h5,
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+
−
 
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+
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padding: 10px;
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font-family: Arial, Helvetica, sans-serif;
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/*font sizing within list nesting*/
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.igem_2019_team_content .igem_2019_team_column_wrapper ul ul li, .igem_2019_team_content .igem_2019_team_column_wrapper ul ul ul li,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper ul ol li, .igem_2019_team_content .igem_2019_team_column_wrapper ul ul ol li,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper ol ol li, .igem_2019_team_content .igem_2019_team_column_wrapper ul ol ul li,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper ol ul li, .igem_2019_team_content .igem_2019_team_column_wrapper ul ol ol li,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper ol ul ul li, .igem_2019_team_content .igem_2019_team_column_wrapper ol ol ul li,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper ol ol ol li, .igem_2019_team_content .igem_2019_team_column_wrapper ol ul ol li{ font-size: 76%; }
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−
 
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−
 
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−
/*layout classes*/
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−
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+
−
 
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/*main layout class */
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .column  {
+
−
float:left;
+
−
margin: 1% 2%;
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padding: 0px;
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}
+
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/* 100% */
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−
.igem_2019_team_content .igem_2019_team_column_wrapper .column.full_size { width:96%; }
+
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/* 66% */
+
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.igem_2019_team_content .igem_2019_team_column_wrapper .column.two_thirds_size { width: 62.6%; }
+
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/* 33% */
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.igem_2019_team_content .igem_2019_team_column_wrapper .column.third_size { width: 29.3%; }
+
−
 
+
−
 
+
−
 
+
−
 
+
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/*all images*/
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .column.full_size img,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .column.two_thirds_size img,
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−
.igem_2019_team_content .igem_2019_team_column_wrapper .column.third_size img {
+
−
margin-bottom: 15px;
+
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width: 100%;
+
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−
 
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/* page break */
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .clear {
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/*add extra space to page break with clear class*/
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .clear.extra_space {
+
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height: 30px;
+
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}
+
−
 
+
−
/* horizontal line to divide the page*/
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .line_divider {
+
−
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−
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+
−
  width: 98%;
+
−
}
+
−
 
+
−
 
+
−
 
+
−
+
−
/*support classes*/
+
−
/**************************************************************************************************************************************************************************************************/
+
−
 
+
−
 
+
−
/*Button  */
+
−
/************************************************/
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .button_link {
+
−
font-size: 130%;
+
−
margin: 30px auto;
+
−
text-align: center;
+
−
}
+
−
 
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .button_link a {
+
−
background-color: #00a19bad !important;
+
−
color: #000 !important;
+
−
font-weight: bold;
+
−
margin: auto;
+
−
text-decoration: none !important;
+
−
padding: 10px 15px !important;
+
−
}
+
−
 
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .button_link a:hover {
+
−
background-color: #ffb819 !important;  
+
−
}
+
−
 
+
−
+
−
 
+
−
/*highlight */
+
−
/************************************************/
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight {
+
−
padding: 15px 20px;
+
−
}
+
−
 
+
−
 
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight p,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight h1,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight h2,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight h3,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight h4,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight h5,
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight h6 {
+
−
padding: 5px 15px;
+
−
}
+
−
 
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight.decoration_background {
+
−
background-color: #ececec;  
+
−
}
+
−
 
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight.decoration_A_top {
+
−
    border-top: 4px solid #00a19bad;
+
−
}
+
−
 
+
−
 
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight.decoration_A_full {
+
−
    border: 4px solid #00a19bad;
+
−
}
+
−
 
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight.decoration_B_top {
+
−
    border-top: 4px solid #ffb819
+
−
}
+
−
 
+
−
 
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .highlight.decoration_B_full {
+
−
    border: 4px solid #ffb819;
+
−
}
+
−
 
+
−
 
+
−
 
+
−
 
+
−
/*mobile*/
+
−
/**************************************************************************************************************************************************************************************************/
+
−
 
+
−
 
+
−
/* 1800px  */
+
−
/************************************************/
+
−
@media only screen and (max-width: 1800px) {
+
−
.igem_2019_team_content { width: 85%;}
+
−
.igem_2019_team_menu {display:block;}
+
−
+
−
}
+
−
 
+
−
/* 1400px  */
+
−
/************************************************/
+
−
@media only screen and (max-width: 1400px) {
+
−
.igem_2019_team_menu .menu_item { font-size:100%;}
+
−
.igem_2019_team_menu .submenu .submenu_item { font-size:90%;}
+
−
.igem_2019_team_menu {display:block;}
+
−
}
+
−
 
+
−
 
+
−
/* 1100px  */
+
−
/************************************************/
+
−
@media only screen and (max-width: 1100px) {
+
−
.igem_2019_team_content {width:100%; margin-left:0px;}
+
−
+
−
.igem_2019_team_menu {display:none;float:right;margin-top:47px;max-width:100%;position:fixed;width:25%;}
+
−
+
−
.igem_2019_team_mobile_bar {display:block;}
+
−
+
−
.igem_2019_team_content .igem_2019_team_column_wrapper .column.full_size, .igem_2019_team_content .igem_2019_team_column_wrapper .column.two_thirds_size,.igem_2019_team_content .igem_2019_team_column_wrapper .column.third_size {width:96%; }
+
−
 
+
−
}
+
−
 
+
−
/* 850px  */
+
−
/************************************************/
+
−
@media only screen and (max-width: 850px) {
+
−
.igem_2019_team_menu {width:40%;}
+
−
}
+
−
 
+
−
/*500px  */
+
−
/************************************************/
+
−
@media only screen and (max-width: 500px) {
+
−
.igem_2019_team_menu {min-width:100%;width:100%;}
+
−
}
+
−
 
+
−
 
+
−
/**************************************************************************************************************************************************************************************************/
+
−
 
+
  
  
 +
  <ul id="slide-out" class="sidenav">
 +
    <li style="padding: 0"><div class="sidenavBanner">
 +
      <div class="background"></div>
 +
      <p class="flow-text" style="width:100%;text-align:center"><span class="white-text">Notebook</span></p>
 +
    </div></li>
 +
    <li>
 +
      <ul class="collapsible expandable">
 +
        <li class="onThisPageNav"><span>On this page</span></li>
 +
        <li class="onThisPageNav"><a href="#section1">section1</a></li>
 +
        <li class="onThisPageNav"><a href="#section2">section2</a></li>
 +
        <li class="onThisPageNav"><a href="#section3">section3</a></li>
 +
        <li class="onThisPageNav"><a href="#section4">section4</a></li>
  
 +
        <li><span class="pageSidebar">Team: Fudan-TSI</span></li><li><div class="collapsible-header"><span class="pageSidebar">Project</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Description">Background</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Design">Design</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Experiments">Experiments</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Applied_Design">Applied design</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Judging">Judging</a></li></ul></div></li><li><div class="collapsible-header active"><span class="pageSidebar">Results</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate#ReverseTranscription">Reverse transcription</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate#Recombination">Recombination</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Demonstrate">Demonstration</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Measurement">Measurement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Notebook">Notebook</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Model</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Model">Modeling</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Software">Software</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Hardware">Hardware</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Parts</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Basic_Part">Basic parts</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Composite_Part">Composite parts</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Improve">Part improvement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Part_Collection">Part collection</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Human practices</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Public_Engagement">Public engagement</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Human_Practices#IntegratedHumanPractice">Integrated HP</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Collaborations">Collaborations</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Safety">Safety</a></li></ul></div></li><li><div class="collapsible-header"><span class="pageSidebar">Team</span></div><div class="collapsible-body"><ul><li><a class="pageSidebar" href="/Team:Fudan-TSI/Team">Members</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Attributions">Attributions</a></li><li><a class="pageSidebar" href="/Team:Fudan-TSI/Heritage">Heritage</a></li></ul></div></li>
 +
      </ul><!-- .expandable -->
 +
    </li>
 +
    <li><div class="placeHolder"></div></li>
 +
  </ul>
 +
  </header>
  
 +
  <div id="pageContent">
 +
      <div id="contentBanner" class="figureBanner">
 +
          <div class="row">
 +
              <div class="col s12 hide-on-med-and-up">
 +
                  <h1><br/>Notebook</h1>
 +
                  <p class="flow-text">We hereby present a toolbox for <i>in vivo</i> continuous mutation library construction. Our toolbox is orthogonal and provides a wide range of applications among various species.</p>
 +
              </div>
 +
          </div>
 +
          <div class="hide-on-small-only">
 +
<style>
 +
#demo {width:100%;height:100%;position:relative;z-index:-100;}
 +
#demo svg {width:100%;height:100%;position:fixed;}
 +
#demo svg g {mix-blend-mode:lighten;}
 +
#demo svg polygon {stroke:none;fill:white;}
 
</style>
 
</style>
 +
<div id="pageCover">
 +
  <svg id="demo" viewBox="0 0 1600 600" preserveAspectRatio="xMidYMid slice">
 +
        <defs>
 +
        <linearGradient id="grad1" x1="0" y1="0" x2="1" y2="0" color-interpolation="sRGB">
 +
          <stop id="stop1a" offset="0%" stop-color="#12a3b4"></stop>
 +
          <stop id="stop1b" offset="100%" stop-color="#ff509e"></stop>
 +
        </linearGradient>
 +
        <linearGradient id="grad2" x1="0" y1="0" x2="1" y2="0" color-interpolation="sRGB">
 +
          <stop id="stop2a" offset="0%" stop-color="#e3bc13"></stop>
 +
          <stop id="stop2b" offset="100%" stop-color="#00a78f"></stop>
 +
        </linearGradient>
 +
        </defs>
 +
        <rect id="rect1" x="0" y="0" width="1600" height="600" stroke="none" fill="url(#grad1)"></rect>
 +
        <rect id="rect2" x="0" y="0" width="1600" height="600" stroke="none" fill="url(#grad2)"></rect>
 +
  </svg>
 +
</div><!-- #pageCover -->
 +
<script src="https://2019.igem.org/wiki/index.php?title=Template:Fudan-TSI/bkg&action=raw&ctype=text/javascript"></script>
 +
        <script>
 +
      //////////////////////////////
 +
      // Demo Functions
 +
      //////////////////////////////
 +
      function bkgFunction(showStats) {
 +
        // stats
 +
        if (showStats) {
 +
        var stats = new Stats();
 +
        stats.domElement.style.position = 'absolute';
 +
        stats.domElement.style.left = '0';
 +
        stats.domElement.style.top = '0';
 +
        document.body.appendChild(stats.domElement);
 +
        requestAnimationFrame(function updateStats(){
 +
          stats.update();
 +
          requestAnimationFrame(updateStats);
 +
        });
 +
        }
 +
        // init
 +
        var svg = document.getElementById('demo');
 +
        tesselation.setup(svg);
 +
        gradients.setup();
 +
        var lastTransitionAt, transitionDelay = 10000, transitionDuration = 3000;
 +
        function playNextTransition() {
 +
        tesselation.next(transitionDuration);
 +
        gradients.next(transitionDuration);
 +
        };
 +
        function tick(time) {
 +
        if (!lastTransitionAt || time - lastTransitionAt > transitionDelay) {
 +
          lastTransitionAt = time;
 +
          playNextTransition();
 +
        }
 +
        window.requestAnimationFrame(tick);
 +
        }
 +
        window.requestAnimationFrame(tick);
 +
      }
 +
      //////////////////////////////
 +
      // Delaunay Triangulation
 +
      //////////////////////////////
 +
      var calcDelaunayTriangulation = (function() {
 +
        var EPSILON = 1.0 / 1048576.0;
 +
        function getSuperT(vertices) {
 +
        var xMin = Number.POSITIVE_INFINITY, yMin = Number.POSITIVE_INFINITY,
 +
          xMax = Number.NEGATIVE_INFINITY, yMax = Number.NEGATIVE_INFINITY,
 +
          i, xDiff, yDiff, maxDiff, xCenter, yCenter;
 +
        for(i = vertices.length; i--; ) {
 +
          if(vertices[i][0] < xMin) xMin = vertices[i][0];
 +
          if(vertices[i][0] > xMax) xMax = vertices[i][0];
 +
          if(vertices[i][1] < yMin) yMin = vertices[i][1];
 +
          if(vertices[i][1] > yMax) yMax = vertices[i][1];
 +
        }
 +
        xDiff = xMax - xMin;
 +
        yDiff = yMax - yMin;
 +
        maxDiff = Math.max(xDiff, yDiff);
 +
        xCenter = xMin + xDiff * 0.5;
 +
        yCenter = yMin + yDiff * 0.5;
 +
        return [
 +
          [xCenter - 20 * maxDiff, yCenter - maxDiff],
 +
          [xCenter, yCenter + 20 * maxDiff],
 +
          [xCenter + 20 * maxDiff, yCenter - maxDiff]
 +
        ];
 +
        }
 +
        function circumcircle(vertices, i, j, k) {
 +
        var xI = vertices[i][0], yI = vertices[i][1],
 +
          xJ = vertices[j][0], yJ = vertices[j][1],
 +
          xK = vertices[k][0], yK = vertices[k][1],
 +
          yDiffIJ = Math.abs(yI - yJ), yDiffJK = Math.abs(yJ - yK),
 +
          xCenter, yCenter, m1, m2, xMidIJ, xMidJK, yMidIJ, yMidJK, xDiff, yDiff;
 +
        // bail condition
 +
        if(yDiffIJ < EPSILON){
 +
          if (yDiffJK < EPSILON){
 +
            throw new Error("Can't get circumcircle since all 3 points are y-aligned");
 +
          }
 +
        }
  
  
−
<!------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------->
+
        // calc circumcircle center x/y, radius
−
<!--- THIS IS WHERE THE HTML BEGINS --->
+
        m1  = -((xJ - xI) / (yJ - yI));
−
<!------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------->
+
        m2  = -((xK - xJ) / (yK - yJ));
−
 
+
        xMidIJ = (xI + xJ) / 2.0;
−
<head>
+
        xMidJK = (xJ + xK) / 2.0;
−
 
+
        yMidIJ = (yI + yJ) / 2.0;
−
<!-- This tells the browser that your page is responsive -->
+
        yMidJK = (yJ + yK) / 2.0;
−
<meta name="viewport" content="width=device-width, initial-scale=1">
+
        xCenter = (yDiffIJ < EPSILON) ? xMidIJ :
−
+
          (yDiffJK < EPSILON) ? xMidJK :
−
<script type="text/javascript" src="https://2019.igem.org/wiki/index.php?title=Template:Fudan-TSI/jQuery&amp;action=raw&amp;ctype=text/javascript"></script>
+
          (m1 * xMidIJ - m2 * xMidJK + yMidJK - yMidIJ) / (m1 - m2);
−
+
        yCenter  = (yDiffIJ > yDiffJK) ?
−
+
          m1 * (xCenter - xMidIJ) + yMidIJ :
−
+
          m2 * (xCenter - xMidJK) + yMidJK;
−
</head>
+
        xDiff = xJ - xCenter;
−
 
+
        yDiff = yJ - yCenter;
−
<link rel="stylesheet" href="https://2019.igem.org/wiki/index.php?title=Template:Fudan-TSI/Fudan-font-awesome.css&action=raw&ctype=text/css" />
+
        // return
−
 
+
        return {i: i, j: j, k: k, x: xCenter, y: yCenter, r: xDiff * xDiff + yDiff * yDiff};
−
<!------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------->
+
        }
−
<!--- Menu --->
+
        function dedupeEdges(edges) {
−
<!------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------->
+
        var i, j, a, b, m, n;
−
+
        for(j = edges.length; j; ) {
−
 
+
          b = edges[--j]; a = edges[--j];
−
<style>
+
          for(i = j; i; ) {
−
+
          n = edges[--i]; m = edges[--i];
−
    *{margin: 0;padding: 0;list-style: none;}
+
          if(a === m){
−
/* via: https://blog.csdn.net/weixin_41014370/article/details/79523637 */
+
            if (b===n){
−
 
+
              edges.splice(j, 2); edges.splice(i, 2);
−
/** 清除内外边距 **/
+
              break;
−
body, h1, h3, h3, h4, h5, h6, hr, p, blockquote, /* structural elements 结构元素 */
+
            }
−
dl, dt, dd, ul, ol, li, /* list elements 列表元素 */
+
          }
−
pre, /* text formatting elements 文本格式元素 */
+
          if(a === n){
−
form, fieldset, legend, button, input, textarea, /* form elements 表单元素 */
+
            if (b===m){
−
th, td /* table elements 表格元素 */ {
+
              edges.splice(j, 2); edges.splice(i, 2);
−
margin: 0;
+
              break;
−
padding: 0;
+
            }
−
}
+
          }
−
 
+
          }
−
/** 设置默认字体 **/
+
        }
−
 
+
        }
−
/* @@@@ h1, h3, h3, h4, h5, h6 { font-size: 100%; }*/
+
        return function(vertices) {
−
address, cite, dfn, em, var { font-style: normal; } /* 将斜体扶正 */
+
        var n = vertices.length,
−
code, kbd, pre, samp { font-family: courier new, courier, monospace; } /* 统一等宽字体 */
+
          i, j, indices, st, candidates, locked, edges, dx, dy, a, b, c;
−
/* @@@@ small { font-size: 12px; } /* 小于 12px 的中文很难阅读，让 small 正常化 */
+
        // bail if too few / too many verts
−
 
+
        if(n < 3 || n > 2000)
−
/** 重置列表元素 **/
+
          return [];
−
ul, ol { list-style: none; }
+
        // copy verts and sort indices by x-position
−
 
+
        vertices = vertices.slice(0);
−
/** 重置文本格式元素 **/
+
        indices = new Array(n);
−
a { text-decoration: none; }
+
        for(i = n; i--; )
−
a:hover { text-decoration: underline; }
+
          indices[i] = i;
−
 
+
        indices.sort(function(i, j) {
−
 
+
          return vertices[j][0] - vertices[i][0];
−
/** 重置表单元素 **/
+
        });
−
legend { color: #000; } /* for ie6 */
+
        // supertriangle
−
fieldset, img { border: 0; } /* img 搭车：让链接里的 img 无边框 */
+
        st = getSuperT(vertices);
−
button, input, select, textarea { font-size: 100%; } /* 使得表单元素在 ie 下能继承字体大小 */
+
        vertices.push(st[0], st[1], st[2]);
−
/* 注：optgroup 无法扶正 */
+
        // init candidates/locked tris list
−
 
+
        candidates = [circumcircle(vertices, n + 0, n + 1, n + 2)];
−
/** 重置表格元素 **/
+
        locked = [];
−
table { border-collapse: collapse; border-spacing: 0; }
+
        edges = [];
−
+
        // scan left to right
−
</style>
+
        for(i = indices.length; i--; edges.length = 0) {
−
 
+
          c = indices[i];
−
 
+
          // check candidates tris against point
−
 
+
          for(j = candidates.length; j--; ) {
−
 
+
          // lock tri if point to right of circumcirc
−
<!-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    Content begins    --------------------------------------------------------------------------------------------------------------------------------->
+
          dx = vertices[c][0] - candidates[j].x;
−
<!---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------->
+
          if (dx > 0.0){
−
+
            if(dx * dx > candidates[j].r){
−
+
              locked.push(candidates[j]);
−
+
            candidates.splice(j, 1);
−
+
            continue;
−
+
            }
−
<link rel="stylesheet" href="https://cdn.staticfile.org/twitter-bootstrap/3.3.7/css/bootstrap.min.css">
+
          }
−
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">
+
−
+
−
+
−
<link rel="stylesheet" href="https://2019.igem.org/wiki/index.php?title=Template:Fudan-TSI/materialize.css&amp;action=raw&amp;ctype=text/css">
+
−
+
−
<style>
+
−
+
−
body{
+
−
margin:0;
+
−
padding:0;
+
−
background-color:#08273a;
+
−
}
+
−
a{
+
−
text-decoration:none;
+
−
}
+
−
#global_wrapper{
+
−
width:100%;
+
−
height:auto;
+
−
margin:0;
+
−
position:absolute;
+
−
}
+
−
#navUl{
+
−
width:100%;
+
−
height:110px;
+
−
padding:40px 0 0 0;
+
−
overflow:visible;
+
−
position:fixed;
+
−
list-style:none;
+
−
z-index:999;
+
−
background-color:#08273a;
+
−
margin:0;
+
−
top:0;
+
−
}
+
−
#mobileNav{
+
−
width:100%;
+
−
height:80px;
+
−
padding:20px 0 0 0;
+
−
top:0;
+
−
background-color:#001d2a;
+
−
position:fixed;
+
−
display:none;
+
−
text-align:center;
+
−
z-index:999;
+
−
}
+
−
#mobileNav img{
+
−
display:none;
+
−
margin:0;
+
−
padding:0;
+
−
}
+
−
#mobileLogo{
+
−
display:inline-block;
+
−
}
+
−
#mobileControl{
+
−
float:right;
+
−
display:inline-block;
+
−
margin-right:15px;
+
−
margin-top:3px;
+
−
}
+
−
#mobileCtrl{
+
−
height:25px;
+
−
}
+
−
#mobileTeamName{
+
−
display:inline-block;
+
−
}
+
−
#navImg{
+
−
display:inline-block;
+
−
float:left;
+
−
height:70px;
+
−
width:auto;
+
−
position:relative;
+
−
margin-left:4%;
+
−
margin-top:0;
+
−
}
+
−
.logo{
+
−
height:55px;
+
−
width:auto;
+
−
margin-top:1.3%;
+
−
}
+
−
.teamname{
+
−
height:28px;
+
−
}
+
−
 
+
−
#navBar{
+
−
float:right;
+
−
position:relative;
+
−
width:auto;
+
−
display:inline-block;
+
−
margin-right:4%;
+
−
}
+
−
.navLi{
+
−
float:left;
+
−
display:inline-block;
+
−
margin-top:3%;
+
−
color:white;
+
−
font-size:20px;
+
−
position:relative;
+
−
margin-left:18px;
+
−
text-align:center;
+
−
font-family:"Lucida Grande", "Lucida Sans Unicode", "Lucida Sans", "DejaVu Sans", Verdana, "sans-serif";
+
−
text-decoration:none;
+
−
}
+
−
.navA{
+
−
display:block;
+
−
text-align:center;
+
−
color:white;
+
−
text-decoration:none;
+
−
}
+
−
.navA2{
+
−
display:block;
+
−
overflow:visible;
+
−
color:white;
+
−
height:auto;
+
−
}
+
−
.ul2{
+
−
list-style:none;
+
−
position:absolute;
+
−
display:none;
+
−
overflow:hidden;
+
−
padding:10px 0 0 0 !important;
+
−
margin:0 !important;
+
−
font-size:17px;
+
−
left:50%;
+
−
transform:translateX(-50%);
+
−
border-bottom-left-radius: 10px;
+
−
border-bottom-right-radius: 10px;
+
−
background:linear-gradient(#08273a,rgba(0,138,201,1));
+
−
}
+
−
.li2{
+
−
padding:0;
+
−
margin:10px 20px;
+
−
text-align:center;
+
−
display:block;
+
−
}
+
−
.navA:link,.navA2:link{
+
−
text-decoration:none;
+
−
}
+
−
.navA:visited{
+
−
color:white;
+
−
}
+
−
.navA2:visited,.navA2:active{
+
−
color:white;
+
−
}
+
−
.navA:hover{
+
−
color:#7dded4;
+
−
}
+
−
.navA2:hover{
+
−
color:#7dded4;
+
−
}
+
−
.jqhover{
+
−
color:#7dded4;
+
−
}
+
−
.navA:hover{
+
−
text-decoration:none;
+
−
}
+
−
.navA:active{
+
−
text-decoration:none;
+
−
color:white;
+
−
}
+
−
 
+
−
</style>
+
−
 
+
−
+
−
 
+
−
+
−
<style>
+
−
+
−
#pageContent{
+
−
margin:100px 0 0 0;
+
−
text-align:center;
+
−
}
+
−
+
−
.row{
+
−
clear:both!important;
+
−
width:100%!important;
+
−
}
+
−
 
+
−
.title1{
+
−
font-size:2.3rem;
+
−
text-align:center;
+
−
color:white;
+
−
display:block;
+
−
margin-top:10%;
+
−
margin-bottom:7%;
+
−
line-height:110%;
+
−
}
+
−
.title2{
+
−
color:white;
+
−
text-align:left;
+
−
font-size:2rem;
+
−
line-height:130%;
+
−
display:block;
+
−
width:100%;
+
−
}
+
−
.title3{
+
−
font-size:1.5rem;
+
−
color:white;
+
−
text-align:left !important;
+
−
display:block;
+
−
width:100%;
+
−
line-height:110%;
+
−
padding-left:2%;
+
−
}
+
−
.para1{
+
−
color:white;
+
−
text-align:justify !important;
+
−
align-items:flex-start;
+
−
line-height:140%;
+
−
font-size:1.3rem;
+
−
margin-bottom:50px !important;
+
−
width:100%;
+
−
margin:auto 0;
+
−
}
+
−
.para1 a{
+
−
color:white;
+
−
}
+
−
.para1 a:visited, .para1 a:active{
+
−
color:white;
+
−
}
+
−
.para1 a:hover{
+
−
color:rgba(96,255,249,1.00)!important;
+
−
}
+
−
.content1{
+
−
margin:7% auto;
+
−
}
+
−
.pic2{
+
−
width:150%;
+
−
}
+
−
.reverseDiv{
+
−
position:relative !important;
+
−
float:right !important;
+
−
}
+
−
 
+
−
+
−
.paraUl{
+
−
list-style-type:decimal !important;
+
−
list-style-position:outside;
+
−
padding-left:auto;
+
−
font-size:1.2rem;
+
−
}
+
−
.paraUl li{
+
−
padding-right:4% ;
+
−
}
+
−
+
−
+
−
#containerWithLeftNav{
+
−
display:block;
+
−
margin-left:25%;
+
−
}
+
−
.legend{
+
−
color:white;
+
−
text-align:center;
+
−
}
+
−
.legend>div{
+
−
width:100%;
+
−
text-align:justify!important;
+
−
font-size:1.1rem;
+
−
}
+
−
.legends{
+
−
margin:auto 15%;
+
−
}
+
−
 
+
−
 
+
−
</style>
+
−
+
−
<style>
+
−
+
−
@media only screen and (max-width:1200px){
+
−
#mobileBar{
+
−
margin-left:4%;
+
−
}
+
−
.navLi{
+
−
font-size:18px;
+
−
margin-top:3.5%;
+
−
}
+
−
}
+
−
+
−
+
−
@media only screen and (max-width:1100px){
+
−
+
−
#navUl{
+
−
display:block;
+
−
float:right;
+
−
margin-top:0;
+
−
top:80px;
+
−
right:0;
+
−
background-color:rgba(0,0,0,0);
+
−
padding:0;
+
−
}
+
−
+
−
#mobileNav{
+
−
display:block;
+
−
}
+
−
+
−
#navImg{
+
−
display:none;
+
−
}
+
−
+
−
+
−
#navBar{
+
−
margin:0 1% 0 0;
+
−
padding-right:2%;
+
−
padding-left:1%;
+
−
position:relative;
+
−
display:none;
+
−
}
+
−
+
−
#mobileNav img{
+
−
display:inline-block;
+
−
margin:5px 0;
+
−
padding:0;
+
−
}
+
−
#mobileControl{
+
−
margin-top:8px;
+
−
}
+
−
 
+
−
.logo{
+
−
height:45px;
+
−
margin-top:7px;
+
−
}
+
−
.navLi{
+
−
display:block;
+
−
position:relative;
+
−
float:right;
+
−
clear:both;
+
−
white-space:nowrap;
+
−
text-align:right;
+
−
margin:0;
+
−
height:60px;
+
−
width:100%;
+
−
background-color:#00324a;
+
−
}
+
−
.navA{
+
−
display:block;
+
−
text-align:right;
+
−
position:relative;
+
−
float:right;
+
−
padding:20px 20px !important;
+
−
}
+
−
.n2{
+
−
display:none;
+
−
width:0;
+
−
position:relative;
+
−
float:left;
+
−
text-align:right;
+
−
}
+
−
.ul2{
+
−
background:none;
+
−
padding-top:0;
+
−
background-color:#00557b;
+
−
text-align:right;
+
−
display:block;
+
−
position:relative;
+
−
float:right;
+
−
right:100%;
+
−
transform:translateX(0%);
+
−
top:0;
+
−
transform:translateY(1%);
+
−
border-radius:0 0 0 10px;
+
−
}
+
−
.open{
+
−
display:block;
+
−
}
+
−
+
−
.title2{
+
−
font-size:1.8rem;
+
−
line-height:140%;
+
−
}
+
−
.para1{
+
−
font-size:1.3rem;
+
−
}
+
−
.pic2{
+
−
width:120%;
+
−
}
+
−
+
−
.highlightIcon{
+
−
margin:20% auto 10% auto;
+
−
}
+
−
.highlightTitle{
+
−
margin-bottom:15%;
+
−
}
+
−
 
+
−
+
−
}
+
−
+
−
+
−
@media only screen and (max-width:992px){
+
−
+
−
#navUl{
+
−
display:block;
+
−
float:right;
+
−
margin:0;
+
−
top:80px;
+
−
right:0;
+
−
}
+
−
+
−
#mobileNav{
+
−
display:block;
+
−
}
+
−
+
−
#navImg{
+
−
display:none;
+
−
}
+
−
+
−
#navTeamName{
+
−
display:none;
+
−
}
+
−
+
−
#navBar{
+
−
margin:0 1% 0 0 ;
+
−
margin-right:2%;
+
−
padding-right:1%;
+
−
padding-left:1%;
+
−
position:relative;
+
−
display:none;
+
−
}
+
−
#mobileControl{
+
−
margin-top:10px;
+
−
}
+
−
#mobileNav img{
+
−
display:inline-block;
+
−
margin:5px 0;
+
−
padding:0;
+
−
}
+
−
.logo{
+
−
height:40px;
+
−
}
+
−
.navLi{
+
−
display:block;
+
−
position:relative;
+
−
float:right;
+
−
clear:both;
+
−
white-space:nowrap;
+
−
text-align:right;
+
−
height:60px;
+
−
width:100%;
+
−
}
+
−
.navA{
+
−
display:block;
+
−
text-align:right;
+
−
position:relative;
+
−
float:right;
+
−
font-size:15px;
+
−
}
+
−
.n2{
+
−
display:none;
+
−
width:0;
+
−
position:relative;
+
−
float:left;
+
−
}
+
−
.ul2{
+
−
font-size:13px;
+
−
}
+
−
.open{
+
−
display:block;
+
−
}
+
−
+
−
 
+
−
+
−
#animation_container{
+
−
display:none;
+
−
}
+
−
#teamLogo{
+
−
display:block;
+
−
}
+
−
 
+
−
+
−
.title2{
+
−
font-size:1.5rem;
+
−
}
+
−
.para1{
+
−
font-size:1.2rem;
+
−
}
+
−
.paraUl{
+
−
font-size:1.1rem;
+
−
}
+
−
.pic2{
+
−
width:100%;
+
−
}
+
−
 
+
−
+
−
}
+
−
+
−
+
−
@media only screen and (max-width:768px){
+
−
.col-md-4{
+
−
clear:both;
+
−
}
+
−
.col-md-8{
+
−
clear:both;
+
−
}
+
−
.pic2{
+
−
margin-bottom:10%;
+
−
width:80%;
+
−
}
+
−
.title2{
+
−
font-size:1.2rem;
+
−
}
+
−
.para1{
+
−
font-size:1.1rem;
+
−
}
+
−
.paraUl{
+
−
font-size:1rem;
+
−
}
+
−
.pic2{
+
−
width:80%;
+
−
}
+
−
#sponser img {
+
−
width:60%;
+
−
}
+
−
+
−
#containerWithLeftNav{
+
−
margin-left:auto;
+
−
}
+
−
+
−
}
+
−
+
−
</style>
+
−
 
+
−
 
+
−
+
−
+
−
 
+
−
 
+
−
<style>
+
−
#footContainer{
+
−
width:90%;
+
−
}
+
−
#FudanFooter{
+
−
margin:auto 0;
+
−
width:100%;
+
−
padding:3% 0;
+
−
}
+
−
#FudanFooter #usefulLinks {
+
−
color: #cacaca;
+
−
padding-left: 1rem;
+
−
}
+
−
 
+
−
#FudanFooter #usefulLinks ul {
+
−
font-size: 13px;
+
−
line-height: 14px;
+
−
border-top: solid 2px;
+
−
color: inherit;
+
−
text-decoration: none;
+
−
padding-top: 5px;
+
−
margin:0;
+
−
}
+
−
 
+
−
#FudanFooter #usefulLinks div {
+
−
color: #cacaca;
+
−
}
+
−
 
+
−
#FudanFooter #usefulLinks div:hover {
+
−
color: white;
+
−
}
+
−
 
+
−
#FudanFooter #usefulLinks a {
+
−
color: inherit;
+
−
}
+
−
 
+
−
#FudanFooter #usefulLinks a:hover {
+
−
text-decoration: underline;
+
−
}
+
−
 
+
−
#FudanFooter #usefulLinks div.active,
+
−
#FudanFooter #usefulLinks div.active a {
+
−
color: white;
+
−
}
+
−
 
+
−
#FudanFooter #usefulLinks div.active ul {
+
−
border-top: solid white 2px;
+
−
}
+
−
 
+
−
#FudanFooter #usefulLinks li {
+
−
padding: 3px 0 6px 3px;
+
−
list-style:none;
+
−
}
+
−
 
+
−
#usefulLinks span {
+
−
font-size: 20px;
+
−
}
+
−
+
−
 
+
−
#FudanFooter div.footer-copyright {
+
−
font-size: 13px;
+
−
line-height: 15px;
+
−
}
+
−
.footerUl{
+
−
margin:2% 4%;
+
−
}
+
−
</style>
+
−
 
+
−
<script>
+
−
+
−
$(document).ready(function(){
+
−
+
−
+
−
var winWidth=$(window).width();
+
−
+
−
if (winWidth>1100){
+
−
$(".navA").mouseenter(function(){
+
−
$(this).parent().find(".ul2").stop().fadeIn(400);
+
−
});
+
−
$(".navLi").mouseleave(function(){
+
−
$(this).find(".ul2").stop().fadeOut(400);
+
−
});
+
−
+
−
+
−
}
+
−
else{
+
−
$(".navA:not(.noSubmenu)").removeAttr("href");
+
−
$("#mobileNav").click(function(){
+
−
$("#navBar").toggle();
+
−
});
+
−
$(document).click(function(event){
+
−
var m = $("#mobileNav,#navBar");
+
−
if (!m.is(event.target)){
+
−
if (m.has(event.target).length===0){
+
−
$("#navBar").hide();
+
−
$(".open").parent().find(".navA").css("color","white");
+
−
$(".open").removeClass("open");
+
−
}
+
−
 
+
−
}
+
−
});
+
−
$(".navLi").click(function(){
+
−
if ($(this).find(".n2").hasClass("open")){
+
−
$(".open").parent().find(".navA").css("color","white");
+
−
$(this).find(".n2").removeClass("open");
+
−
}
+
−
else{
+
−
$(".open").parent().find(".navA").css("color","white");
+
−
$(".open").removeClass("open");
+
−
$(this).find(".n2").addClass("open");
+
−
$(this).find(".navA").css("color","#7dded4");
+
−
}
+
−
});
+
−
}
+
−
+
−
+
−
+
−
+
−
+
−
+
−
});
+
−
+
−
+
−
</script>
+
−
+
−
+
−
+
−
<div id="global_wrapper">
+
−
<div id="mobileNav">
+
−
+
−
<div id="mobileLogo"><img src="https://static.igem.org/mediawiki/2019/d/d3/T--Fudan-TSI--HomepageLogo.gif" class="logo"></div>
+
−
<div id="mobileControl"><img src="https://static.igem.org/mediawiki/2019/thumb/a/ae/T--Fudan-TSI--mobileCtrl.gif/683px-T--Fudan-TSI--mobileCtrl.gif" id="mobileCtrl"></div>
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<li class="navLi">
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<a class="navA" href="https://2019.igem.org/Team:Fudan-TSI/Description">Project</a>
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<div class="n2">
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Description">Description</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Design">Design</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Applied_Design" style="white-space:nowrap">Applied Design</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Experiments">Experiment</a></li>
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<li class="navLi">
+
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<a class="navA" href="https://2019.igem.org/Team:Fudan-TSI/Results">Results</a>
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<div class="n2">
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<ul class="ul2">
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Results/Reverse_Transcription">Reverse Transcription</a></li>
+
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Results/Recombination">Recombination</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Demonstrate">Demonstration</a></li>
+
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Measurement">Measurement</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Notebook">Notebook</a></li>
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</ul>
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</li>
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<li class="navLi">
+
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<a class="navA" href="https://2019.igem.org/Team:Fudan-TSI/Model">Model</a>
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<div class="n2">
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<ul class="ul2">
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Model">Modeling</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Software">Software</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Hardware">Hardware</a></li>
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</ul>
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</div>
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</li>
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<li class="navLi">
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<a class="navA" href="https://2019.igem.org/Team:Fudan-TSI/Parts">Parts</a>
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<div class="n2">
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<ul class="ul2">
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<li class="li2"><a class="navA2" style="white-space:nowrap;" href="https://2019.igem.org/Team:Fudan-TSI/Basic_Part">Basic Parts</a></li>
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<li class="li2"><a class="navA2" style="white-space:nowrap;" href="https://2019.igem.org/Team:Fudan-TSI/Composite_Part">Composite Parts</a></li>
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<li class="li2"><a class="navA2" style="white-space:nowrap;" href="https://2019.igem.org/Team:Fudan-TSI/Improve">Improved Parts</a></li>
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<li class="li2"><a class="navA2" style="white-space:nowrap;" href="https://2019.igem.org/Team:Fudan-TSI/Part_Collection">Part Collection</a></li>
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</ul>
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</div>
+
−
</li>
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−
<li class="navLi">
+
−
<a class="navA" href="https://2019.igem.org/Team:Fudan-TSI/Human_Practices">Human Practices</a>
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<div class="n2">
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<ul class="ul2">
+
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<li class="li2"><a class="navA2" style="white-space:nowrap;" href="https://2019.igem.org/Team:Fudan-TSI/Public_Engagement">Education &amp; <br />Public Engagement</a></li>
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<li class="li2"><a class="navA2" style="white-space:nowrap;" href="https://2019.igem.org/Team:Fudan-TSI/Human_Practices">Integrated <br />Human Practice</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Collaborations">Collaboration</a></li>
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<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Safety">Safety</a></li>
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</ul>
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</div>
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</li>
+
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−
<li class="navLi">
+
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<a class="navA" href="https://2019.igem.org/Team:Fudan-TSI/Team">Team</a>
+
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<div class="n2">
+
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<ul class="ul2">
+
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<li class="li2"><a class="navA2" style="white-space:nowrap;" href="https://2019.igem.org/Team:Fudan-TSI/Team">Team Members</a></li>
+
−
<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Attributions">Attribution</a></li>
+
−
<li class="li2"><a class="navA2" href="https://2019.igem.org/Team:Fudan-TSI/Acknowledgment">Acknowledgement</a></li>
+
−
</ul>
+
−
</div>
+
−
</li>
+
−
+
−
<li class="navLi"><a class="navA noSubmenu" href="https://2019.igem.org/Team:Fudan-TSI/Judging">Judging</a></li>
+
−
+
−
</ul>
+
−
+
−
+
−
</ul>
+
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<!----------------------------------------------------------------------------------------------------------------------------------------->
+
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<!---- Cover ---->
+
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<!----------------------------------------------------------------------------------------------------------------------------------------->
+
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<div id="pageCover">
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<script type="text/javascript" src="https://2019.igem.org/wiki/index.php?title=Template:Fudan-TSI/bkg&amp;action=raw&amp;ctype=text/javascript"></script>
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<script>
+
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$(document).ready(function($){
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var $root = $('html, body');
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$root.animate({
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return false;
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<svg id="demo" viewBox="0 0 1600 600" preserveAspectRatio="xMidYMid slice" style="z-index: -100;">
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<linearGradient id="grad1" x1="0" y1="0" x2="1" y2="0" color-interpolation="sRGB">
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<linearGradient id="grad2" x1="0" y1="0" x2="1" y2="0" color-interpolation="sRGB">
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  <stop id="stop2a" offset="0%" stop-color="#e3bc13"></stop>
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<div id="demoCover"><img id="coverPic" src="https://static.igem.org/mediawiki/2019/d/d9/T--Fudan-TSI--coverDesign.gif"></div>
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<style>
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#pageCover{
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width:100%;
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margin:0;
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padding-top:80px;
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#demoCover{
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width:100vw;
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height:80vh;
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position:absolute;
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background-color:rgba(8,39,58,0.5);
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text-align:center;
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#coverPic{
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width:550px;
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margin:20vh auto;
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#demo{
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width:100vw;
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height:70vh;
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position:relative;
+
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#demo svg {
+
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  width: 100%;
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#demo svg g {
+
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  mix-blend-mode: lighten;
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+
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@media only screen and (max-width:1100px){
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#pageCover{
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padding-top:55px;
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#demoCover{
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top:55px;
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height:30vh;
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#demo{
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height:30vh;
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#coverPic{
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width:500px;
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margin:7vh auto;
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#pageCover{
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padding-top:55px;
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#demoCover{
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top:55px;
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#coverPic{
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width:500px;
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margin:6vh auto;
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+
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+
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@media only screen and (max-width:768px){
+
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#pageCover{
+
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padding-top:55px;
+
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}
+
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#demoCover{
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top:55px;
+
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#coverPic{
+
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width:400px;
+
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margin:8vh auto;
+
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+
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@media only screen and (max-width:500px){
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#coverPic{
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width:200px;
+
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margin:8vh auto;
+
−
}
+
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}
+
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</style>
+
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<script>
+
−
//////////////////////////////
+
−
// Demo Functions
+
−
//////////////////////////////
+
−
function bkgFunction(showStats) {
+
−
  // stats
+
−
  if (showStats) {
+
−
var stats = new Stats();
+
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stats.domElement.style.position = 'absolute';
+
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stats.domElement.style.left = '0';
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+
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+
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  stats.update();
+
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  requestAnimationFrame(updateStats);
+
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+
−
  }
+
−
  // init
+
−
  var svg = document.getElementById('demo');
+
−
  tesselation.setup(svg);
+
−
  gradients.setup();
+
−
  var lastTransitionAt, transitionDelay = 10000, transitionDuration = 3000;
+
−
  function playNextTransition() {
+
−
tesselation.next(transitionDuration);
+
−
gradients.next(transitionDuration);
+
−
  };
+
−
  function tick(time) {
+
−
if (!lastTransitionAt || time - lastTransitionAt > transitionDelay) {
+
−
  lastTransitionAt = time;
+
−
  playNextTransition();
+
−
}
+
−
window.requestAnimationFrame(tick);
+
−
  }
+
−
  window.requestAnimationFrame(tick);
+
−
}
+
−
//////////////////////////////
+
−
// Delaunay Triangulation
+
−
//////////////////////////////
+
−
var calcDelaunayTriangulation = (function() {
+
−
  var EPSILON = 1.0 / 1048576.0;
+
−
  function getSuperT(vertices) {
+
−
var xMin = Number.POSITIVE_INFINITY, yMin = Number.POSITIVE_INFINITY,
+
−
xMax = Number.NEGATIVE_INFINITY, yMax = Number.NEGATIVE_INFINITY,
+
−
i, xDiff, yDiff, maxDiff, xCenter, yCenter;
+
−
for(i = vertices.length; i--; ) {
+
−
  if(vertices[i][0] < xMin) xMin = vertices[i][0];
+
−
  if(vertices[i][0] > xMax) xMax = vertices[i][0];
+
−
  if(vertices[i][1] < yMin) yMin = vertices[i][1];
+
−
  if(vertices[i][1] > yMax) yMax = vertices[i][1];
+
−
}
+
−
xDiff = xMax - xMin;
+
−
yDiff = yMax - yMin;
+
−
maxDiff = Math.max(xDiff, yDiff);
+
−
xCenter = xMin + xDiff * 0.5;
+
−
yCenter = yMin + yDiff * 0.5;
+
−
return [
+
−
  [xCenter - 20 * maxDiff, yCenter - maxDiff],
+
−
  [xCenter, yCenter + 20 * maxDiff],
+
−
  [xCenter + 20 * maxDiff, yCenter - maxDiff]
+
−
];
+
−
  }
+
−
  function circumcircle(vertices, i, j, k) {
+
−
var xI = vertices[i][0], yI = vertices[i][1],
+
−
xJ = vertices[j][0], yJ = vertices[j][1],
+
−
xK = vertices[k][0], yK = vertices[k][1],
+
−
yDiffIJ = Math.abs(yI - yJ), yDiffJK = Math.abs(yJ - yK),
+
−
xCenter, yCenter, m1, m2, xMidIJ, xMidJK, yMidIJ, yMidJK, xDiff, yDiff;
+
−
// bail condition
+
−
if(yDiffIJ < EPSILON){
+
−
if (yDiffJK < EPSILON){
+
−
throw new Error("Can't get circumcircle since all 3 points are y-aligned");
+
−
}
+
−
}
+
−
+
−
+
−
// calc circumcircle center x/y, radius
+
−
m1  = -((xJ - xI) / (yJ - yI));
+
−
m2  = -((xK - xJ) / (yK - yJ));
+
−
xMidIJ = (xI + xJ) / 2.0;
+
−
xMidJK = (xJ + xK) / 2.0;
+
−
yMidIJ = (yI + yJ) / 2.0;
+
−
yMidJK = (yJ + yK) / 2.0;
+
−
xCenter = (yDiffIJ < EPSILON) ? xMidIJ :
+
−
  (yDiffJK < EPSILON) ? xMidJK :
+
−
  (m1 * xMidIJ - m2 * xMidJK + yMidJK - yMidIJ) / (m1 - m2);
+
−
yCenter  = (yDiffIJ > yDiffJK) ?
+
−
  m1 * (xCenter - xMidIJ) + yMidIJ :
+
−
  m2 * (xCenter - xMidJK) + yMidJK;
+
−
xDiff = xJ - xCenter;
+
−
yDiff = yJ - yCenter;
+
−
// return
+
−
return {i: i, j: j, k: k, x: xCenter, y: yCenter, r: xDiff * xDiff + yDiff * yDiff};
+
−
  }
+
−
  function dedupeEdges(edges) {
+
−
var i, j, a, b, m, n;
+
−
for(j = edges.length; j; ) {
+
−
  b = edges[--j]; a = edges[--j];
+
−
  for(i = j; i; ) {
+
−
n = edges[--i]; m = edges[--i];
+
−
if(a === m){
+
−
  if (b===n){
+
−
  edges.splice(j, 2); edges.splice(i, 2);
+
−
  break;
+
−
  }  
+
−
}
+
−
if(a === n){
+
−
  if (b===m){
+
−
  edges.splice(j, 2); edges.splice(i, 2);
+
−
  break;
+
−
  }  
+
−
}
+
−
  }
+
−
}
+
−
  }
+
−
  return function(vertices) {
+
−
var n = vertices.length,
+
−
i, j, indices, st, candidates, locked, edges, dx, dy, a, b, c;
+
−
// bail if too few / too many verts
+
−
if(n < 3 || n > 2000)
+
−
  return [];
+
−
// copy verts and sort indices by x-position
+
−
vertices = vertices.slice(0);
+
−
indices = new Array(n);
+
−
for(i = n; i--; )
+
−
  indices[i] = i;
+
−
indices.sort(function(i, j) {
+
−
  return vertices[j][0] - vertices[i][0];
+
−
});
+
−
// supertriangle
+
−
st = getSuperT(vertices);
+
−
vertices.push(st[0], st[1], st[2]);
+
−
// init candidates/locked tris list
+
−
candidates = [circumcircle(vertices, n + 0, n + 1, n + 2)];
+
−
locked = [];
+
−
edges = [];
+
−
// scan left to right
+
−
for(i = indices.length; i--; edges.length = 0) {
+
−
  c = indices[i];
+
−
  // check candidates tris against point
+
−
  for(j = candidates.length; j--; ) {
+
−
// lock tri if point to right of circumcirc
+
−
dx = vertices[c][0] - candidates[j].x;
+
−
if (dx > 0.0){
+
−
if(dx * dx > candidates[j].r){
+
−
locked.push(candidates[j]);
+
−
  candidates.splice(j, 1);
+
−
  continue;
+
−
}
+
−
}
+
−
 
+
−
 
+
−
// point outside circumcirc = leave candidates
+
−
dy = vertices[c][1] - candidates[j].y;
+
−
if(dx * dx + dy * dy - candidates[j].r > EPSILON)
+
−
  continue;
+
−
// point inside circumcirc = break apart, save edges
+
−
edges.push(
+
−
  candidates[j].i, candidates[j].j,
+
−
  candidates[j].j, candidates[j].k,
+
−
  candidates[j].k, candidates[j].i
+
−
);
+
−
candidates.splice(j, 1);
+
−
  }
+
−
  // new candidates from broken edges
+
−
  dedupeEdges(edges);
+
−
  for(j = edges.length; j; ) {
+
−
b = edges[--j];
+
−
a = edges[--j];
+
−
candidates.push(circumcircle(vertices, a, b, c));
+
−
  }
+
−
}
+
−
// close candidates tris, remove tris touching supertri verts
+
−
for(i = candidates.length; i--; )
+
−
  locked.push(candidates[i]);
+
−
candidates.length = 0;
+
−
for(i = locked.length; i--; )
+
−
  if(locked[i].i < n){
+
−
  if(locked[i].j < n){
+
−
  if(locked[i].k < n){
+
−
  candidates.push(locked[i].i, locked[i].j, locked[i].k);
+
−
  }
+
−
  }
+
−
  }
+
−
+
−
+
−
// done
+
−
return candidates;
+
−
  };
+
−
})();
+
−
var tesselation = (function() {
+
−
  var svg, svgW, svgH, prevGroup;
+
−
  function createRandomTesselation() {
+
−
var wW = window.innerWidth;
+
−
var wH = window.innerHeight;
+
−
var gridSpacing = 250, scatterAmount = 0.75;
+
−
var gridSize, i, x, y;
+
−
if (wW / wH > svgW / svgH) { // window wider than svg = use width for gridSize
+
−
  gridSize = gridSpacing * svgW / wW;
+
−
} else { // window taller than svg = use height for gridSize
+
−
  gridSize = gridSpacing * svgH / wH;
+
−
}
+
−
var vertices = [];
+
−
var xOffset = (svgW % gridSize) / 2, yOffset = (svgH % gridSize) / 2;
+
−
for (x = Math.floor(svgW/gridSize) + 1; x >= -1; x--) {
+
−
  for (y = Math.floor(svgH/gridSize) + 1; y >= -1; y--) {
+
−
vertices.push(
+
−
  [
+
−
xOffset + gridSize * (x + scatterAmount * (Math.random() - 0.5)),
+
−
yOffset + gridSize * (y + scatterAmount * (Math.random() - 0.5))
+
−
  ]
+
−
);
+
−
  }
+
−
}
+
−
var triangles = calcDelaunayTriangulation(vertices);
+
−
var group = document.createElementNS('http://www.w3.org/2000/svg','g');
+
−
var polygon;
+
−
for(i = triangles.length; i; ) {
+
−
  polygon = document.createElementNS('http://www.w3.org/2000/svg','polygon');
+
−
  polygon.setAttribute('points',
+
−
vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1] + ' ' +
+
−
vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1] + ' ' +
+
−
vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1]
+
−
  );
+
−
  group.appendChild(polygon);
+
−
}
+
−
return group;
+
−
  }
+
−
  return {
+
−
setup: function(svgElement) {
+
−
  svg = svgElement;
+
−
  var vb = svg.getAttribute('viewBox').split(/\D/g);
+
−
  svgW = vb[2];
+
−
  svgH = vb[3];
+
−
},
+
−
next: function(t) {
+
−
  var toRemove, i, n;
+
−
  t /= 1000;
+
−
if(prevGroup){
+
−
if(prevGroup.children){
+
−
if(prevGroup.children.length){
+
−
toRemove = prevGroup;
+
−
n = toRemove.children.length;
+
−
for (i = n; i--; ) {
+
−
  TweenMax.to(toRemove.children[i], t*0.4, {opacity: 0, delay: t*(0.3*i/n)});
+
−
}
+
−
TweenMax.delayedCall(t * (0.7 + 0.05), function(group) { svg.removeChild(group); }, [toRemove], this);
+
−
}
+
−
}
+
−
}
+
−
+
−
  var g = createRandomTesselation();
+
−
  n = g.children.length;
+
−
  for (i = n; i--; ) {
+
−
TweenMax.fromTo(g.children[i], t*0.4, {opacity: 0}, {opacity: 0.3 + 0.25 * Math.random(), delay: t*(0.3*i/n + 0.3), ease: Back.easeOut});
+
−
  }
+
−
  svg.appendChild(g);
+
−
  prevGroup = g;
+
−
}
+
−
  }
+
−
})();
+
−
//////////////////////////////
+
−
// Gradients
+
−
//////////////////////////////
+
−
var gradients = (function() {
+
−
  var grad1, grad2, showingGrad1;
+
−
  // using colors from IBM Design Colors this time
+
−
  var colors = [ // 14 colors - use 3-5 span
+
−
'#3c6df0', // ultramarine50
+
−
'#12a3b4', // aqua40
+
−
'#00a78f', // teal40
+
−
'#00aa5e', // green40
+
−
'#81b532', // lime30
+
−
'#e3bc13', // yellow20
+
−
'#ffb000', // gold20
+
−
'#fe8500', // orange30
+
−
'#fe6100', // peach40
+
−
'#e62325', // red50
+
−
'#dc267f', // magenta50
+
−
'#c22dd5', // purple50
+
−
'#9753e1', // violet50
+
−
'#5a3ec8'  // indigo60
+
−
  ];
+
−
  function assignRandomColors(gradObj) {
+
−
var rA = Math.floor(colors.length * Math.random());
+
−
var rB = Math.floor(Math.random() * 3) + 3; // [3 - 5]
+
−
rB = (rA + (rB * (Math.random() < 0.5 ? -1 : 1)) + colors.length) % colors.length;
+
−
gradObj.stopA.setAttribute('stop-color', colors[rA]);
+
−
gradObj.stopB.setAttribute('stop-color', colors[rB]);
+
−
  }
+
−
  return {
+
−
setup: function() {
+
−
  showingGrad1 = false;
+
−
  grad1 = {
+
−
stopA: document.getElementById('stop1a'),
+
−
stopB: document.getElementById('stop1b'),
+
−
rect:  document.getElementById('rect1')
+
−
  };
+
−
  grad2 = {
+
−
stopA: document.getElementById('stop2a'),
+
−
stopB: document.getElementById('stop2b'),
+
−
rect:  document.getElementById('rect2')
+
−
  };
+
−
  grad1.rect.style.opacity = 0;
+
−
  grad2.rect.style.opacity = 0;
+
−
},
+
−
next: function(t) {
+
−
  t /= 1000;
+
−
  var show, hide;
+
−
  if (showingGrad1) {
+
−
hide = grad1;
+
−
show = grad2;
+
−
  } else {
+
−
hide = grad2;
+
−
show = grad1;
+
−
  }
+
−
  showingGrad1 = !showingGrad1;
+
−
  TweenMax.to(hide.rect, 0.55*t, {opacity: 0, delay: 0.2*t, ease: Sine.easeOut});
+
−
  assignRandomColors(show);
+
−
  TweenMax.to(show.rect, 0.65*t, {opacity: 1, ease: Sine.easeIn});
+
−
}
+
−
  };
+
−
})();
+
−
//////////////////////////////
+
−
// Start
+
−
//////////////////////////////
+
−
bkgFunction();
+
−
</script>
+
−
+
−
 
+
−
 
+
−
<!----------------------------------------------------------------------------------------------------------------------------------------->
+
−
<!---- Left Navigator ---->
+
−
<!----------------------------------------------------------------------------------------------------------------------------------------->
+
−
 
+
−
 
+
−
 
+
−
+
−
<div id="pageContent">
+
−
<!----------------------------------------------------------------------------------------------------------------------------------------->
+
−
<!---- Content ---->
+
−
<!----------------------------------------------------------------------------------------------------------------------------------------->
+
−
+
−
<div class="container">
+
−
<div class="row">
+
−
<div class="row" style="width:100%;">
+
−
<div class="col">
+
−
<embed src="https://static.igem.org/mediawiki/2019/a/a3/T--Fudan-TSI--Notebook.pdf" width="100%" height="600px" type="application/pdf" />
+
−
</div>
+
−
</div>
+
−
+
−
</div>
+
−
</div>
+
−
+
−
 
+
−
+
−
</div>
+
−
+
−
+
−
+
−
<!----------------------------------------------------------------------------------------------------------------------------------------->
+
−
<!---- Foot ---->
+
−
<!----------------------------------------------------------------------------------------------------------------------------------------->
+
−
+
−
<footer id="FudanFooter" class="page-footer grey">
+
−
+
−
<div class="container" id="footContainer">
+
−
<div class="row">
+
−
<div class="col-md-4" id="sponser" style="padding-top:3%;">
+
−
<div class="row">
+
−
<div class="col-sm-6" style="padding:0;">
+
−
<div class="row align-items-center">
+
−
<div class="col">
+
−
<img class="img-fluid" alt="Team Fudan-TSI" src="https://static.igem.org/mediawiki/2019/0/0f/T--Fudan-TSI--LogoGrey.gif" />
+
−
</div>
+
−
<div class="col">
+
−
<img class="img-fluid" alt="Fudan University" src="https://static.igem.org/mediawiki/2018/f/f7/T--Fudan--schoolLogo.png" />
+
−
</div>
+
−
</div>
+
−
</div>
+
−
<div class="col-sm-6" style="padding:0;">
+
−
<div class="row align-items-center">
+
−
<div class="col">
+
−
<img class="img-fluid" alt="School of Life Sciences, Fudan University" src="https://static.igem.org/mediawiki/2018/1/1d/T--Fudan--schoolOfLifeSciencesIcon.png" />
+
−
</div>
+
−
<div class="col">
+
−
<img class="img-fluid" alt="Yunfeng Capital" src="https://static.igem.org/mediawiki/2018/e/e2/T--Fudan--yunfengLogo.png" />
+
−
</div>
+
−
</div>
+
−
</div>
+
−
</div>
+
−
<div class="row">
+
−
<h3 class="col s12" style="text-align: left; color: rgba(255, 255, 255, 0.8); font-size:12.5px; margin-top:5px;">R-Evolution: an <i>in vivo</i> sequence-specific toolbox for continuous mutagenesis</h3>
+
−
</div>
+
−
</div>
+
−
+
−
<div class="col-md-8" id="usefulLinks">
+
−
<div class="row">
+
−
<div class="col-lg-6" style="padding:0;">
+
−
<div class="row">
+
−
+
−
<div class="col-sm-4">
+
−
<div class="footerUl align-items-center active">
+
−
<span><a href="/Team:Fudan-TSI/Description" style="text-decoration:none;">Project</a></span>
+
−
<ul>
+
−
<li><a href="/Team:Fudan-TSI/Description">Background</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Design">Design</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Applied_Design">Applied Design</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Experiments">Experiments</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Judging">Judging</a></li>
+
−
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+
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+
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+
−
+
−
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+
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<div class="footerUl align-items-center">
+
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+
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<ul>
+
−
<li><a href="/Team:Fudan-TSI/Results#ReverseTranscription">Reverse Transcription</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Results#Recombination">Recombination</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Demonstrate">Demonstration</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Measurement">Measurement</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Notebook">Notebook</a></li>
+
−
</ul>
+
−
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+
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</div>
+
−
+
−
<div class="col-sm-4">
+
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<div class="footerUl align-items-center">
+
−
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+
−
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+
−
<li><a href="/Team:Fudan-TSI/Model">Modeling</a></li>
+
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<li><a href="/Team:Fudan-TSI/Software">Software</a></li>
+
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<li><a href="/Team:Fudan-TSI/Hardware">Hardware</a></li>
+
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+
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+
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+
−
+
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</div>
+
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</div>
+
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<div class="col-lg-6" style="padding:0;">
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<div class="row">
+
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+
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<div class="col-sm-4">
+
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<div class="footerUl align-items-center">
+
−
  <span><a href="/Team:Fudan-TSI/Parts" style="text-decoration:none;">Parts</a></span>
+
−
<ul>
+
−
<li><a href="/Team:Fudan-TSI/Basic_Part">Basic parts</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Composite_Part">Composite parts</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Improve">Improved parts</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Part_Collection">Part collection</a></li>
+
−
</ul>
+
−
</div>
+
−
</div>
+
−
+
−
<div class="col-sm-4">
+
−
<div class="footerUl align-items-center">
+
−
  <span><a href="/Team:Fudan-TSI/Human_Practices" style="text-decoration:none;">Outreach</a></span>
+
−
<ul>
+
−
<li><a href="/Team:Fudan-TSI/Public_Engagement">Education &amp; Public engagement</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Integrated_Human_Practice">Integrated human practice</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Collaborations">Collaborations</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Safety">Safety</a></li>
+
−
</ul>
+
−
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+
−
</div>
+
−
+
−
<div class="col-sm-4">
+
−
<div class="footerUl align-items-center">
+
−
  <span><a href="/Team:Fudan-TSI/Team" style="text-decoration:none;">Team</a></span>
+
−
<ul>
+
−
<li><a href="/Team:Fudan-TSI/Team">Members</a></li>
+
−
<li><a href="/Team:Fudan-TSI/Attributions">Attributions</a></li>
+
−
<li><a href="https://2018.igem.org/Team:Fudan/Heritage" target=_blank>Heritage</a></li>
+
−
<li><a href="/Team:Fudan-TSI">&#169; 2019</a></li>
+
−
</ul>
+
−
</div>
+
−
</div>
+
−
+
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+
−
</div>
+
−
+
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+
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+
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+
−
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+
−
</div>
+
−
+
−
<div class="footer-copyright">
+
−
<div class="container" style="width:90%;">
+
−
<div class="contactUS row">
+
−
  <div class="col s12 m6 l6"><i class="fa fa-location-arrow"></i> Life Sci Bldg, 2005 Songhu Rd, Shanghai
+
−
  </div>
+
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<div class="col s12 m6 l2"><i class="fa fa-fax"></i> +86-21-31246727
+
−
  </div>
+
−
<div class="col s12 m6 l2"><i class="fa fa-envelope-o"></i> igem@fudan.edu.cn
+
−
  </div>
+
−
<div class="col s12 m6 l2"><i class="fa fa-twitter"></i> <i class="fa fa-wechat"></i> Fudan_iGEM
+
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+
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+
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+
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</div>
+
−
</footer>
+
−
+
−
+
−
 
+
−
</div>
+
  
−
 
−
 
−
<script>
 
−
 
−
var winHeight=$(window).height();
 
−
var winWidth=$(window).width();
 
−
var pagePosition=$("#pageContent").offset().top+90;
 
−
var navHeight=$(".leftNav").height();
 
−
var footerHeight=$("#FudanFooter").height();
 
−
var maxTopDistance=$("#FudanFooter").offset().top-$(".leftNav").height()-$("#top_menu_14").height()-$("#navUl").height();
 
−
$(".leftNav").css({"position":"absolute","top":pagePosition});
 
−
$(window).resize(function(){
 
−
var winHeight=$(window).height();
 
−
var winWidth=$(window).width();
 
−
var topDistance=$(window).scrollTop()+0.25*winHeight;
 
−
var navHeight=$(".leftNav").height();
 
−
var footerHeight=$("#FudanFooter").height();
 
−
var maxTopDistance=$("#FudanFooter").offset().top-$(".leftNav").height()-$("#navUl").height();
 
−
var leftNavFromTop=pagePosition-$(window).scrollTop();
 
−
if (leftNavFromTop<0.25*winHeight){
 
−
if(topDistance<maxTopDistance){
 
−
$(".leftNav").css({"position":"fixed","top":0.25*winHeight+$("#top_menu_14").height()});
 
−
}
 
−
else{
 
−
$(".leftNav").css({"position":"absolute","top":maxTopDistance});
 
−
}
 
−
}
 
−
else{
 
−
$(".leftNav").css({"position":"absolute","top":pagePosition});
 
−
}
 
−
});
 
  
−
$(window).scroll(function(){
+
          // point outside circumcirc = leave candidates
−
var winHeight=$(window).height();
+
          dy = vertices[c][1] - candidates[j].y;
−
var winWidth=$(window).width();
+
          if(dx * dx + dy * dy - candidates[j].r > EPSILON)
−
var leftNavFromTop=pagePosition-$(window).scrollTop();
+
            continue;
−
var topDistance=$(window).scrollTop()+0.25*winHeight;
+
          // point inside circumcirc = break apart, save edges
−
if (leftNavFromTop<0.25*winHeight){
+
          edges.push(
−
if(topDistance<maxTopDistance){
+
            candidates[j].i, candidates[j].j,
−
$(".leftNav").css({"position":"fixed","top":0.25*winHeight+$("#top_menu_14").height()});
+
            candidates[j].j, candidates[j].k,
−
}
+
            candidates[j].k, candidates[j].i
−
else{
+
          );
−
$(".leftNav").css({"position":"absolute","top":maxTopDistance});
+
          candidates.splice(j, 1);
−
};
+
          }
−
}
+
          // new candidates from broken edges
−
else{
+
          dedupeEdges(edges);
−
$(".leftNav").css({"position":"absolute","top":pagePosition});
+
          for(j = edges.length; j; ) {
−
}
+
          b = edges[--j];
−
});
+
          a = edges[--j];
−
+
          candidates.push(circumcircle(vertices, a, b, c));
−
$(".leftNav a").click(function () {
+
          }
−
$('html, body').animate({
+
        }
−
scrollTop: $($.attr(this, 'href')).offset().top-$("#navUl").height()-50
+
        // close candidates tris, remove tris touching supertri verts
−
}, 500);
+
        for(i = candidates.length; i--; )
−
return false;
+
          locked.push(candidates[i]);
−
});
+
        candidates.length = 0;
 +
        for(i = locked.length; i--; )
 +
          if(locked[i].i < n){
 +
            if(locked[i].j < n){
 +
              if(locked[i].k < n){
 +
                candidates.push(locked[i].i, locked[i].j, locked[i].k);
 +
              }
 +
            }
 +
          }
  
  
−
$(window).scroll(function(){
+
        // done
−
+
        return candidates;
−
var currentScroll=$(this).scrollTop();
+
        };
−
var firstHeight=$("#pageCover").height();
+
      })();
−
var footerFromTop=$("#FudanFooter").offset().top;
+
      var tesselation = (function() {
−
var $currentSection=null;
+
        var svg, svgW, svgH, prevGroup;
−
$(".leftNavA").each(function(){
+
        function createRandomTesselation() {
−
$('.leftNavA').removeClass('menu-active');
+
        var wW = window.innerWidth;
−
var hePoint=$($(this).attr("href"));
+
        var wH = window.innerHeight;
−
var divPosition=hePoint.offset().top-$("#navUl").height()-50;
+
        var gridSpacing = 250, scatterAmount = 0.75;
−
if (divPosition-1<currentScroll){
+
        var gridSize, i, x, y;
−
$currentSection=$(this);
+
        if (wW / wH > svgW / svgH) { // window wider than svg = use width for gridSize
−
}
+
          gridSize = gridSpacing * svgW / wW;
−
if (currentScroll>firstHeight){
+
        } else { // window taller than svg = use height for gridSize
−
$(".leftNavA").removeClass("menu-active");
+
          gridSize = gridSpacing * svgH / wH;
−
$currentSection.addClass("menu-active");
+
        }
−
}
+
        var vertices = [];
−
});
+
        var xOffset = (svgW % gridSize) / 2, yOffset = (svgH % gridSize) / 2;
−
+
        for (x = Math.floor(svgW/gridSize) + 1; x >= -1; x--) {
−
var $currentSection2;
+
          for (y = Math.floor(svgH/gridSize) + 1; y >= -1; y--) {
−
$('.leftNavA2').each(function(){
+
          vertices.push(
−
$('.leftNavA2').removeClass('menu-active2');
+
            [
−
var hePoint2=$($(this).attr("href"));
+
            xOffset + gridSize * (x + scatterAmount * (Math.random() - 0.5)),
−
var divPosition2=hePoint2.offset().top-$("#navUl").height()-50;
+
            yOffset + gridSize * (y + scatterAmount * (Math.random() - 0.5))
−
if (divPosition2-1<currentScroll){
+
            ]
−
$currentSection2=$(this);
+
          );
−
}
+
          }
−
if (currentScroll>firstHeight){
+
        }
−
$('.leftNavA2').removeClass('menu-active2');
+
        var triangles = calcDelaunayTriangulation(vertices);
−
$currentSection2.addClass('menu-active2');
+
        var group = document.createElementNS('http://www.w3.org/2000/svg','g');
−
}
+
        var polygon;
−
});
+
        for(i = triangles.length; i; ) {
−
});
+
          polygon = document.createElementNS('http://www.w3.org/2000/svg','polygon');
 +
          polygon.setAttribute('points',
 +
          vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1] + ' ' +
 +
          vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1] + ' ' +
 +
          vertices[triangles[--i]][0] + ',' + vertices[triangles[i]][1]
 +
          );
 +
          group.appendChild(polygon);
 +
        }
 +
        return group;
 +
        }
 +
        return {
 +
        setup: function(svgElement) {
 +
          svg = svgElement;
 +
          var vb = svg.getAttribute('viewBox').split(/\D/g);
 +
          svgW = vb[2];
 +
          svgH = vb[3];
 +
        },
 +
        next: function(t) {
 +
          var toRemove, i, n;
 +
          t /= 1000;
 +
          if(prevGroup){
 +
            if(prevGroup.children){
 +
              if(prevGroup.children.length){
 +
                toRemove = prevGroup;
 +
                n = toRemove.children.length;
 +
                for (i = n; i--; ) {
 +
                  TweenMax.to(toRemove.children[i], t*0.4, {opacity: 0, delay: t*(0.3*i/n)});
 +
                }
 +
                TweenMax.delayedCall(t * (0.7 + 0.05), function(group) { svg.removeChild(group); }, [toRemove], this);
 +
              }
 +
            }
 +
          }
  
−
</script>
+
          var g = createRandomTesselation();
−
+
          n = g.children.length;
 +
          for (i = n; i--; ) {
 +
          TweenMax.fromTo(g.children[i], t*0.4, {opacity: 0}, {opacity: 0.3 + 0.25 * Math.random(), delay: t*(0.3*i/n + 0.3), ease: Back.easeOut});
 +
          }
 +
          svg.appendChild(g);
 +
          prevGroup = g;
 +
        }
 +
        }
 +
      })();
 +
      //////////////////////////////
 +
      // Gradients
 +
      //////////////////////////////
 +
      var gradients = (function() {
 +
        var grad1, grad2, showingGrad1;
 +
        // using colors from IBM Design Colors this time
 +
        var colors = [ // 14 colors - use 3-5 span
 +
        '#3c6df0', // ultramarine50
 +
        '#12a3b4', // aqua40
 +
        '#00a78f', // teal40
 +
        '#00aa5e', // green40
 +
        '#81b532', // lime30
 +
        '#e3bc13', // yellow20
 +
        '#ffb000', // gold20
 +
        '#fe8500', // orange30
 +
        '#fe6100', // peach40
 +
        '#e62325', // red50
 +
        '#dc267f', // magenta50
 +
        '#c22dd5', // purple50
 +
        '#9753e1', // violet50
 +
        '#5a3ec8'  // indigo60
 +
        ];
 +
        function assignRandomColors(gradObj) {
 +
        var rA = Math.floor(colors.length * Math.random());
 +
        var rB = Math.floor(Math.random() * 3) + 3; // [3 - 5]
 +
        rB = (rA + (rB * (Math.random() < 0.5 ? -1 : 1)) + colors.length) % colors.length;
 +
        gradObj.stopA.setAttribute('stop-color', colors[rA]);
 +
        gradObj.stopB.setAttribute('stop-color', colors[rB]);
 +
        }
 +
        return {
 +
        setup: function() {
 +
          showingGrad1 = false;
 +
          grad1 = {
 +
          stopA: document.getElementById('stop1a'),
 +
          stopB: document.getElementById('stop1b'),
 +
          rect:  document.getElementById('rect1')
 +
          };
 +
          grad2 = {
 +
          stopA: document.getElementById('stop2a'),
 +
          stopB: document.getElementById('stop2b'),
 +
          rect:  document.getElementById('rect2')
 +
          };
 +
          grad1.rect.style.opacity = 0;
 +
          grad2.rect.style.opacity = 0;
 +
        },
 +
        next: function(t) {
 +
          t /= 1000;
 +
          var show, hide;
 +
          if (showingGrad1) {
 +
          hide = grad1;
 +
          show = grad2;
 +
          } else {
 +
          hide = grad2;
 +
          show = grad1;
 +
          }
 +
          showingGrad1 = !showingGrad1;
 +
          TweenMax.to(hide.rect, 0.55*t, {opacity: 0, delay: 0.2*t, ease: Sine.easeOut});
 +
          assignRandomColors(show);
 +
          TweenMax.to(show.rect, 0.65*t, {opacity: 1, ease: Sine.easeIn});
 +
        }
 +
        };
 +
      })();
 +
      //////////////////////////////
 +
      // Start
 +
      //////////////////////////////
 +
      bkgFunction();
 +
    </script>
 +
              <div style="position:absolute;top:100px;left:9%"><center><img style="height:120px;width:auto" alt="cover notebook" src="https://static.igem.org/mediawiki/2019/4/4b/T--Fudan-TSI--coverNotebook.gif" /></center></div>
 +
          </div>
 +
      </div>
  
−
+
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  <p>Here is <a target="_blank" href="https://static.igem.org/mediawiki/2019/a/a3/T--Fudan-TSI--Notebook.pdf">the link</a> to download the file above.</p>
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Latest revision as of 05:51, 16 November 2019

Notebook | 2019 iGEM Team:Fudan-TSI


Notebook

We hereby present a toolbox for in vivo continuous mutation library construction. Our toolbox is orthogonal and provides a wide range of applications among various species.

cover notebook

Here is the link to download the file above.