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                         <p class="dropcap">To give you a more intuitive understanding of the phase separation process and the effect of phase separation on the rate of enzymatic reactions, we have made an interactive interface. You can choose the different strengths of interactions between separation elements and different enzyme concentrations to see how the phase separation proceeds and how the rate of the enzymatic reaction changes. </p>
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                        <h2 class="ls color-primary mb-4">General HP</h2>
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                        <h4 class="ls color-primary mb-4">Public Science lecture at China Science and Technology Museum</h4>
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                         <p class="dropcap" style="text-align: justify;">We were invited to participate in the educational event with the Tsinghua-A team to carry out exhibition-based educational activities. Lei, one of the museum staff, was in charge of it and he recruited hundreds of outstanding middle school students from diverse backgrounds all over China with us.</p>
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                        <p class="mb-0">The computation of enzymatic reaction rate changes in the user-interface is based on formula (2.17), which we made some modifications to. First, we assume that every protein cluster forms a real phase, which means 𝜒<sub>𝑖</sub>=1 for all 𝑖’s. Then, we get </p>
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                         <p class="dropcap">If we denote by 𝑆<sub>1</sub> the specific surface area of protein clusters (the ratio of surface area to volume) after phase separation and 𝑆<sub>0</sub> the specific surface area of protein all protein particles before phase separation, one will find the term 𝑞<sup>1/3</sup><sub>0</sub>∑<sup>𝑛</sup><sub>𝑖=1</sub>𝑞<sup>2/3</sup><sub>𝑖</sub> is exactly equal to 𝑆<sub>1</sub>/𝑆<sub>0</sub>. We can use this relationship to extend the application of equation (3.1) to the case where the shape of the protein phase is arbitrary (i.e., not necessarily a sphere), just by replacing the term 𝑞<sup>1/3</sup><sub>0</sub>∑<sup>𝑛</sup><sub>𝑖=1</sub>𝑞<sup>2/3</sup><sub>𝑖</sub> with 𝑆<sub>1</sub>/𝑆<sub>0</sub>. The phase-separated images are two-dimensional, where we can only obtain the ratio of the perimeter to the area of the protein phase (denoted by 𝐶<sub>1</sub> and 𝐶<sub>0</sub> after and before the phase separation respectively) rather than the surface area to volume ratio. We can roughly estimate the relationship between the two ratios using the relationship 3𝐶<sub>1</sub>/𝐶<sub>0</sub>=2𝑆<sub>1</sub>/𝑆<sub>0</sub>. Therefore, we can rewrite (3.1) as
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                        <h4 class="ls color-primary mb-0">Why we become iGEMers?
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                        <h5 class="ls color-primary mb-4">—The Stories of Chinese iGEMers from interviews
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                        <p class="dropcap" style="text-align: justify;"> In iGEMer’s opinion, the long-term goal of iGEM is actually to hope for a model of academic competition. Not only to realize the systematization and engineering of biology, it also dedicates to promote the open source and transparent development of biological tools, and finally to have access to help build an engineering system that can safely and effectively apply biotechnology. iGEM is a process of biological design and research based education, and academy is the essence. But it definitely means more to all iGEMers in their self-development and even to the advancement of scientific study. “More creative. More hard-working. More  cohesive.”We have learned this fully by working with our team and competing with our strong but lovely rivals. IGEM makes  better ‘us’</p>
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                            The value of 𝐶<sub>1</sub> can be calculated via image processing programs, while the value of 𝐶<sub>0</sub> can be inferred from the size of protein particles after scaling to the same scale as the image where we calculate 𝐶<sub>1</sub>.
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                            Since there is not much prior knowledge of the solubility difference of the substrate between in the cytoplasm and in the phase, we conservatively assume that 𝑘<sup>∘</sup><sub>𝑓</sub>=1. As discussed previously, the term 1−𝑒<sup>−𝜆𝑉<sub>0</sub><sup>1/3</sup></sup> is the orientation factor. The orientation factors of different chemical reactions vary greatly, and the orientation factor data of enzymatic reactions are lacking. But as a proof of concept, we don’t need to be that precise and hence we can roughly estimate the orientation factor to be 1×10<sup>-3</sup>.
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Revision as of 21:10, 21 October 2019

iGEM Tsinghua

Human Practices

General HP

Public Science lecture at China Science and Technology Museum

We were invited to participate in the educational event with the Tsinghua-A team to carry out exhibition-based educational activities. Lei, one of the museum staff, was in charge of it and he recruited hundreds of outstanding middle school students from diverse backgrounds all over China with us.

Why we become iGEMers?

—The Stories of Chinese iGEMers from interviews

In iGEMer’s opinion, the long-term goal of iGEM is actually to hope for a model of academic competition. Not only to realize the systematization and engineering of biology, it also dedicates to promote the open source and transparent development of biological tools, and finally to have access to help build an engineering system that can safely and effectively apply biotechnology. iGEM is a process of biological design and research based education, and academy is the essence. But it definitely means more to all iGEMers in their self-development and even to the advancement of scientific study. “More creative. More hard-working. More cohesive.”We have learned this fully by working with our team and competing with our strong but lovely rivals. IGEM makes better ‘us’

Thanks for your support !

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