Team:IIT Chicago/Composite Part

iGEM IIT Chicago

BBa_K3103011 Name

SuperPETase gene Short Description

Enzyme Category

Nicholas Menhart, Thao Dang, Sarahi Trujillo and authors in review paper (1). Designers

Long Description The purpose of the superPETase gene is to degrade PET plastic in the ocean through cyanobacteria. It is composed of a TorA sequence, superPETase gene, a mutation on the gene and a myc tag. The main purpose of the TorA sequence export the protein it is linked to past the plasma membrane, to the periplasmic space. This is a twin-arginine signal sequence that has been shown to function in cyanobacteria. The PETase gene was obtained from this research paper and the TorA sequence from this paper

Design Considerations During the design one mutation was made to the wildtype PETase gene. An Isoleucine was changed to phenylalanine to enhance enzyme activity. Please see superPETase design. In addition the start codon of the wt PETase gene was removed and substituted by a ser, and a TorA signal sequence added. Finally, we added a myc tag at the C terminus to aid in detection. In addition while working in our part, we noticed that a previous IGEM team from 2013 has worked with the TorA sequence, part BBa_K1012002

Part Sequence
Part Parameters
  • Protein: PETase (polyethylene terephthalate hydroplane
  • Codon optimized: cyanobacteria
  • Modifies: catalytic enhancement FxxxI fix and check per give citation
  • Signal sequence: TorA
  • Epitope tag: myc, C-terminal

While research was being done regarding our part, we came across an igem team from 2013 who has also worked with TorA sequence before and we found that very interesting

Citations

  • Borunda, Alejandra. “This Young Whale Died with 88 Pounds of Plastic in Its Stomach.” National Geographic, 22 Mar. 2019, https://www.nationalgeographic.com/environment/2019/03/whale-dies-88-pounds-plastic-philippines/.
  • Hornigold, Thomas, et al. “How Cyanobacteria Could Help Save the Planet.” Singularity Hub, 31 Jan. 2019, https://singularityhub.com/2018/06/04/how-cyanobacteria-could-help-save-the-planet/.
  • Long, Kat. “New Species of Bacteria Eats Plastic.” The Wall Street Journal, Dow Jones & Company, 10 Mar. 2016, https://www.wsj.com/articles/new-species-of-bacteria-eats-plastic-1457636401.
  • Spence, Edward, et al. “Membrane-Specific Targeting of Green Fluorescent Protein by the Tat Pathway in the Cyanobacterium Synechocystis PCC6803.” Molecular Microbiology, vol. 48, no. 6, Dec. 2003, pp. 1481–1489., doi:10.1046/j.1365-2958.2003.03519.x.
  • Whitaker, Hannah. “How the Plastic Bottle Went from Miracle Container to Hated Garbage.” National Geographic, 24 Aug. 2019, https://www.nationalgeographic.com/environment/2019/08/plastic-bottles/.
  • Wüstneck, Bernd. “In a First, Microplastics Found in Human Poop.” National Geographic, 23 Oct. 2018, https://www.nationalgeographic.com/environment/2018/10/news-plastics-microplastics-human-feces/.
  • Yoshida, Shosuke, et al. “A Bacterium That Degrades and Assimilates Poly(Ethylene Terephthalate).” Science, vol. 351, no. 6278, Oct. 2016, pp. 1196–1199., doi:10.1126/science.aad6359.

Illinois Institute of Technology

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