Difference between revisions of "Team:DTU-Denmark/Results"

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     <div class="promotergenerator">
 
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<select id="size_select">
 
<select id="size_select">
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   <option value="option1">An12g07450</option>
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   <option value="option1">PLEAPglaA_2</option>
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   <option value="option2">An07g00070</option>
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   <option value="option2">PLEAPsonB_1</option>
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+
<option value="option3">PLEAPgpdA_1</option>
 +
  <option value="option4">PLEAPgpdA_2</option>
 +
  <option value="option5">PLEAPmstA_1</option>
 +
  <option value="option6">PLEAPunk_1</option>
 +
  <option value="option7">PLEAPgfaA_1</option>
 +
  <option value="option8">PLEAPhfbD_1</option>
 
</select>
 
</select>
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     <img class="size_chart option1" id="imoption1" src="https://static.igem.org/mediawiki/2019/f/f4/T--DTU-Denmark--promotersugar.svg" title="Comming soon" style="margin: 50px 20px;">
 
     <img class="size_chart option1" id="imoption1" src="https://static.igem.org/mediawiki/2019/f/f4/T--DTU-Denmark--promotersugar.svg" title="Comming soon" style="margin: 50px 20px;">
 
     <img id="imoption2" class="size_chart option2" src="https://static.igem.org/mediawiki/2019/b/b0/T--DTU-Denmark--devilpromoterdesc.svg" title="Comming soon" style="margin: 40px 30px;">
 
     <img id="imoption2" class="size_chart option2" src="https://static.igem.org/mediawiki/2019/b/b0/T--DTU-Denmark--devilpromoterdesc.svg" title="Comming soon" style="margin: 40px 30px;">
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</div>
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    </div>
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<div class="collecter">
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    <div class="collecter">
 
      
 
      
 
      
 
      
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<div  class=" header">
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<div id="option1" class="size_chart profile option1">
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    <div  class=" header">
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<h2>An12g07450</h2>
+
   
−
     <p><b>Alias:</b> PmstA<br><br></p>
+
    <!--START-->
−
<p>mstA encodes a high-affinity sugar transporter, and has been shown to be expressed when <i>A. niger</i> starts to run out of sugar. It doesn't care about the age/phase of the culture, only about sugar
+
    <div id="option1" class="size_chart profile option1">
 +
        <h2>An03g06550 (BBa_K3046001)</h2>
 +
     <p><b>Alias:</b> PLEAPglaA_2</p>
 +
        <p>glaA encodes a secreted glucoamylase (1,4-alpha-D-glucan glucohydrolase), andis mostly expressed at the edge of the colonies. Furthermore, it is repressed by xylose and induced by maltose.
 
</p>
 
</p>
−
     <div class="data-box">
+
 
−
     <span class="data" data-name="log(exp) " data-value="84">
+
     <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced<br><br></p>
−
      <p class="info"></p>
+
   
−
    </span>
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    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/0/0e/T--DTU-Denmark--RNASEQglaA_2.png">
−
  </div>
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     <p>RNA seq data derived from [1]<br><br></p>
−
      <div class="data-box">
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    <img class="widgetimg widgetsecond" src="https://static.igem.org/mediawiki/parts/a/aa/T--DTU-Denmark--glaA_2promodynamics.png">
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     <span class="data" data-name="log(post) " data-value="81">
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    </div>
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      <p class="info"></p>
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−
     </span>
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    <!--STOP-->
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  </div>
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−
      <div class="data-box">
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−
     <span id="versionstat" class="data" data-name="Versions: " data-value="40">
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−
      <p class="info"></p>
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−
     </span>
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    <!--START-->
−
  </div>
+
 
 +
   
 +
    <div id="option2" class="profile size_chart option2">
 +
        <h2>An04g05630 (BBa_K3046002)</h2>
 +
<p><b>Alias:</b> PLEAPsonB_1</p>   
 +
        <p>The specific function of sonB_1 in unknown, but it’s orthologs are associated withcellular response to DNA damage and regulation of the mitotic cell cycle.
 +
</p>
 +
 
 +
   
 +
    <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced<br><br></p>
 +
   
 +
    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/b/be/T--DTU-Denmark--RNASEQsonB_1.png">
 +
     <p>RNA seq data derived from [1]<br><br></p>
 +
    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/a/ac/T--DTU-Denmark--sonB_1promodynamics.png">
 +
    </div>
 +
<!--STOP-->   
 +
   
 +
<!--START-->
 +
    <div id="option3" class="size_chart profile option3">
 +
        <h2>An16g01830 (BBa_K3046003)</h2>
 +
    <p><b>Alias:</b> PLEAPgpdA_1</p>
 +
        <p>gpdA encodes a Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which is an enzyme that is involved in glycolysis, and, according to new research, it may also be involved with initiation of apoptosis and vesicle shuttling.
 +
</p>
 +
    <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced<br><br></p>
 +
   
 +
    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/3/3a/T--DTU-Denmark--RNASEQgpdA_1.png">
 +
    <p>RNA seq data derived from [1]<br><br></p>
 +
     <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/5/56/T--DTU-Denmark--gpdA_1promodynamics.png">
 +
    </div>
 +
   
 +
    <!--STOP-->
 +
      
 +
<!--START-->
 +
    <div id="option4" class="size_chart profile option4">
 +
        <h2>An16g01830 (BBa_K3046004)</h2>
 +
    <p><b>Alias:</b> PLEAPgpdA_2</p>
 +
        <p>gpdA encodes a Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which is an enzyme that is involved in glycolysis, and, according to new research, it may also be involved with initiation of apoptosis and vesicle shuttling.
 +
</p>
 +
 
 +
    <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced<br><br></p>
 +
   
 +
    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/3/3a/T--DTU-Denmark--RNASEQgpdA_1.png">
 +
<p>RNA seq data derived from [1]<br><br></p> 
 +
    <img class="widgetimg widgetsecond" src="https://static.igem.org/mediawiki/parts/b/bd/T--DTU-Denmark--gpdA_2promodynamics.png">
 +
    </div>
 +
   
 +
    <!--STOP-->
 +
   
 +
<!--START-->
 +
    <div id="option5" class="size_chart profile option5">
 +
        <h2>An12g07450 (BBa_K3046005</h2>
 +
     <p><b>Alias:</b> PLEAPmstA_1</p>
 +
        <p>mstA encodes a high-affinity sugar transporter and has been shown to be expressed when A. niger starts to run out of sugar. It doesn't care about the age/phase of the culture, only about sugar
 +
</p>
 +
 
 
     <p><b>Special Ability:</b> sensitive sugar sensor, turns on when sugar is limited</p>
 
     <p><b>Special Ability:</b> sensitive sugar sensor, turns on when sugar is limited</p>
−
     <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced</p>
+
     <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced<br><br></p>
−
</div>
+
−
 
+
 
      
 
      
 +
    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/2/21/T--DTU-Denmark--RNASEQmstA_1.png">
 +
    <p>RNA seq data derived from [1]<br><br></p>
 +
    <img class="widgetimg widgetsecond" src="https://static.igem.org/mediawiki/parts/c/c8/T--DTU-Denmark--mstA_1promodynamics.png">
 +
    </div>
 
      
 
      
−
<div id="option2" class="profile size_chart option2">
+
    <!--STOP-->
−
<h2>An07g00070</h2>
+
 
      
 
      
−
<p>A homolog of the <i>A. fumigatus</i> tpcK gene, part of the synthesis pathway for a mycotoxin, this gene represents a classical secondary metabolite, and its promoter acts accordingly: with relatively low leakiness, it turns on hard when the fungi reach stationary phase, a boon for growth-decoupled industrial production. <br>Despite the scary story of the gene it regulates, the promoter is perfectly tame, harmless, and ready to help.
+
<!--START-->  
 +
    <div id="option6" class="size_chart profile option6">
 +
        <h2>An07g08210 (BBa_K3046006)</h2>
 +
    <p><b>Alias:</b> PLEAPunk_1</p>
 +
        <p>This gene has not been characterized in Aspergillus niger yet, but in other aspergilli it seems to be involved in signal transduction along actin filaments by activating kinases.
 
</p>
 
</p>
−
    <div class="data-box">
+
    
−
    <span class="data" data-name="log(exp) " data-value="34">
+
     <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced<br><br></p>
−
      <p class="info"></p>
+
−
    </span>
+
−
   </div>
+
−
      <div class="data-box">
+
−
     <span class="data" data-name="log(post) " data-value="87.79">
+
−
      <p class="info"></p>
+
−
    </span>
+
−
  </div>
+
−
      <div class="data-box">
+
−
    <span id="versionstat1" class="data" data-name="Versions: " data-value="120">
+
−
      <p class="info"></p>
+
−
    </span>
+
−
  </div>
+
 
      
 
      
−
    <p><b>Versions:</b> 6 versions, with 4 levels: synthetically enhanced 1x, naturalistic-ish 2x, sorta weakened 2x, even more weakened 1x</p>
+
    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/e/ec/T--DTU-Denmark--RNASEQunk1.png">
−
</div>
+
  <p>RNA seq data derived from [1]<br><br></p>  
−
 
+
    <img class="widgetimg widgetsecond" src="https://static.igem.org/mediawiki/parts/3/3e/T--DTU-Denmark--unk1promodynamics.png">
 +
    </div>
 
      
 
      
 +
    <!--STOP-->
 
      
 
      
 +
<!--START-->
 +
    <div id="option7" class="size_chart profile option7">
 +
        <h2>An18g06820 (BBa_K3046007)</h2>
 +
    <p><b>Alias:</b> PLEAPgfaA_1</p>
 +
        <p>This gene encodes a gene called putative glutamine:fructose-6-phosphate amidotransferase (which is a mouthful) and is involved with the synthesis of the chitin that makes up the cell wall of fungi.
 +
</p>
 +
 
 +
    <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced<br><br></p>
 
      
 
      
 +
    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/1/1c/T--DTU-Denmark--RNASEQgfa1.png">
 +
    <p>RNA seq data derived from [1]<br><br></p>
 +
    <img class="widgetimg widgetsecond" src="https://static.igem.org/mediawiki/parts/0/0a/T--DTU-Denmark--gfa1promodynamics.png">
 +
    </div>
 +
   
 +
    <!--STOP-->
 +
   
 +
<!--START-->
 +
    <div id="option8" class="size_chart profile option8">
 +
        <h2>An08g09880 (BBa_K3046008)</h2>
 +
    <p><b>Alias:</b> PLEAPhfbD_1</p>
 +
        <p>The hfbD gene supposedly codes for a hydrophobin gene that is active in the dormant conidia of Aspergillus niger. This gene has a special place in our hearts as it’s expression pattern is wonderfully specific.
 +
</p>
 +
 
 +
    <p><b>Versions:</b> 1 naturalistic & 1 synthetically enhanced<br><br></p>
 +
   
 +
    <img class="widgetimg widgetfirst" src="https://static.igem.org/mediawiki/parts/4/45/T--DTU-Denmark--RNASEQhfbD_1.png">
 +
    <p></p>
 +
    <p>RNA seq data derived from [1]<br><br></p>
 +
    <img class="widgetimg widgetsecond" src="https://static.igem.org/mediawiki/parts/7/77/T--DTU-Denmark--hfbD_1promodynamics.png">
 +
    </div>
 +
   
 +
    <!--STOP-->   
 +
   
 +
   
 +
   
 +
    </div>
 
      
 
      
 
      
 
      
 
      
 
      
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<div class="logo1">
 
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    <img src="https://static.igem.org/mediawiki/2019/6/6e/T--DTU-Denmark--dtubiobuilders.svg" title="Comming soon" style="margin: 20px 10px;">
 
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Revision as of 01:14, 22 October 2019

Results

Comming soon!.

Comming soon

Text will also be comming soon.

Pick your Promoter

An03g06550 (BBa_K3046001)

Alias: PLEAPglaA_2

glaA encodes a secreted glucoamylase (1,4-alpha-D-glucan glucohydrolase), andis mostly expressed at the edge of the colonies. Furthermore, it is repressed by xylose and induced by maltose.

Versions: 1 naturalistic & 1 synthetically enhanced

RNA seq data derived from [1]

An04g05630 (BBa_K3046002)

Alias: PLEAPsonB_1

The specific function of sonB_1 in unknown, but it’s orthologs are associated withcellular response to DNA damage and regulation of the mitotic cell cycle.

Versions: 1 naturalistic & 1 synthetically enhanced

RNA seq data derived from [1]

An16g01830 (BBa_K3046003)

Alias: PLEAPgpdA_1

gpdA encodes a Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which is an enzyme that is involved in glycolysis, and, according to new research, it may also be involved with initiation of apoptosis and vesicle shuttling.

Versions: 1 naturalistic & 1 synthetically enhanced

RNA seq data derived from [1]

An16g01830 (BBa_K3046004)

Alias: PLEAPgpdA_2

gpdA encodes a Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which is an enzyme that is involved in glycolysis, and, according to new research, it may also be involved with initiation of apoptosis and vesicle shuttling.

Versions: 1 naturalistic & 1 synthetically enhanced

RNA seq data derived from [1]

An12g07450 (BBa_K3046005

Alias: PLEAPmstA_1

mstA encodes a high-affinity sugar transporter and has been shown to be expressed when A. niger starts to run out of sugar. It doesn't care about the age/phase of the culture, only about sugar

Special Ability: sensitive sugar sensor, turns on when sugar is limited

Versions: 1 naturalistic & 1 synthetically enhanced

RNA seq data derived from [1]

An07g08210 (BBa_K3046006)

Alias: PLEAPunk_1

This gene has not been characterized in Aspergillus niger yet, but in other aspergilli it seems to be involved in signal transduction along actin filaments by activating kinases.

Versions: 1 naturalistic & 1 synthetically enhanced

RNA seq data derived from [1]

An18g06820 (BBa_K3046007)

Alias: PLEAPgfaA_1

This gene encodes a gene called putative glutamine:fructose-6-phosphate amidotransferase (which is a mouthful) and is involved with the synthesis of the chitin that makes up the cell wall of fungi.

Versions: 1 naturalistic & 1 synthetically enhanced

RNA seq data derived from [1]

An08g09880 (BBa_K3046008)

Alias: PLEAPhfbD_1

The hfbD gene supposedly codes for a hydrophobin gene that is active in the dormant conidia of Aspergillus niger. This gene has a special place in our hearts as it’s expression pattern is wonderfully specific.

Versions: 1 naturalistic & 1 synthetically enhanced

RNA seq data derived from [1]

More text soon

Soon.



Sources here will also come soon

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