Difference between revisions of "Team:DUT China B/Parts"

(Prototype team page)
 
Line 1: Line 1:
{{DUT_China_B}}
+
{{DUT_China_B/test_style.css}}
<html>
+
{{Template:DUT_China_B/nav}}
 +
<html lang="en">
 +
<head>
 +
<meta charset="UTF-8">
 +
<title>Document</title>
  
 +
<style>
 +
 +
*{
 +
margin: 0;
 +
padding: 0;
 +
}
 +
body{
 +
background-color: #eee;
 +
}
 +
.firstimg{
 +
width: 100%;
 +
}
 +
.firstimg img{
 +
width: 100%;
 +
                height:100%;
 +
}
 +
#maintest{
 +
position: relative;
 +
float: right;
 +
margin: 0px;
 +
width: 76%;
 +
padding: 3%;
 +
                font-family: 'Times New Roman' !important;
 +
                border: solid #D3D3D3 1px;
 +
/*border-left: 2px solid #ccc;*/
 +
/*clear: both;*/
 +
}
 +
      #maintest p{
 +
      font-size: 20px;
 +
      line-height:25.6px;
 +
        font-family: 'Times New Roman' !important;
 +
      }
 +
      .cart{
 +
    border: solid #D3D3D3 1px;
 +
    padding:5% 5% 5% 5%;
 +
    margin:5% 5% 5% 5%;
 +
      }
 +
      .icon
 +
      {
 +
      width:40px;
 +
      height:40px;
 +
      top:-5px;
 +
      }
 +
      .illustrations
 +
      {
 +
      width:100%;
 +
      height:100%;
 +
      }
 +
/*侧边栏样式*/
 +
#sides{
 +
width: 22%;
 +
padding: 20% 0 10%;
 +
 +
                background-color:#1C2B42;
 +
float: left;
 +
           
 +
 +
               
 +
}
 +
#sides a{
 +
text-decoration: none;
 +
        color:#FFFFFF !important;
 +
font-size: 60px !important;
 +
                positon:fixed;
 +
                top:20px;
 +
}
 +
  
<div class="column full_size">
+
</style>
<h1>Parts</h1>
+
</head>
<p>Each team will make new parts during iGEM and will add them to the Registry of Standard Biological Parts. The iGEM provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
+
<body>
<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
+
<div class="firstimg">
</div>
+
<img src="https://static.igem.org/mediawiki/2019/a/a2/T--DUT_China_B--Description.jpg" alt="parts">
 
+
</div>
<div class="column full_size">
+
<div id="sides">
<div class="highlight decoration_background">
+
<ul id="menu">
<h3>Note</h3>
+
        <li>
<p>Note that parts must be well documented on each part's <a href="http://parts.igem.org/Main_Page">Main Page on the Registry</a>. This documentation includes all of the characterization data for your parts. <b>The part's data MUST be on the part's Main Page on the Registry for your team to be eligible for medals and special prizes pertaining to parts.</b> <br><br>
+
            <a ><font size="4" href="#Inspiration" >Inspiration</font></a>
This page serves to <i>showcase</i> the parts you have made and should include links to the Registry pages for your parts. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
+
        <div style="text-align: center; width: 100%; height:40px"></div>
</div>
+
        </li>
</div>
+
      <br>
 
+
        <li>
<div class="clear extra_space"></div>
+
            <a><font size="4" >Background</font></a>
<div class="line_divider"></div>
+
      <div style="text-align: center; width: 100%; height:40px"></div>
<div class="clear extra_space"></div>
+
      </li>
 
+
      <br>
 
+
        <li>
 
+
            <a><font size="4">Chlamydomonas reinhardtii</font></a>
 
+
           
 
+
        </li>
<div class="column two_thirds_size">
+
      <br>
<div class="highlight decoration_B_full">
+
     
 
+
    </ul>
<h3>Adding parts to the registry</h3>
+
</div>
<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
+
<div id="maintest">
 
+
 
<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Documentation includes the characterization data of your parts.</p>
+
<div class="cart">
<div class="button_link">
+
              <h1  style="font-family: 'Times New Roman' !important; "><a name="Inspiration" >Inspiration </a><img src="https://static.igem.org/mediawiki/2019/9/98/T--DUT_China_B--INSPIRATION.svg" class="icon"> </h1>
<a href="http://parts.igem.org/Add_a_Part_to_the_Registry">
+
               
ADD PARTS
+
<p style="font-family: 'Times New Roman' !important;  ">Have you ever seen the movie from MCU Antman? Imagine if the ant man's suit in the Marvel movie really exists in life,we can turn incredibly small, even to quantum scale, like the Antman who can get into Ironman’s suit and disable it in a minute, or sneak into a machine and fix it from the inside! We will have the opportunity to observe and even manipulate the world from an extremely microscopic perspective! Although the current technological development has not reached this level, it does not prevent us from exerting such bold imagination and trying to transform anything that might be used as a micro-robot. The cell is no doubt the finest complete living body and the most delicate control system we know. It is no exaggeration to compare it to a delicate life robot. But if we want natural cells to fully perform the functions we expect, the most viable way is to transform cells like machines. Cellular micro-robots have greatly attracted our attention, and we are excited to imagine such a steerable micro-robot and direct it for us. Synthetic biology is providing us with a way to build cell loops and transform cells according to our wishes, so this year, we can't wait to use synthetic biology to build such a controllable cell micro-nano robot.</p>
</a>
+
</div>
+
                <div style="text-align: center; width: 100%; ">
 
+
                <img alt="" src="https://static.igem.org/mediawiki/2019/e/ed/T--DUT_China_B--mirco_robot.jpg" style="display: inline-block;width:50%;" />
</div>
+
            <center> <br> <p style="left:45%;position:relative;">nanorobot</p> </center>
</div>
+
                </div>
 
+
              </div>
 
+
              <div class="cart">
 
+
              <h1 style="font-family: 'Times New Roman' !important; ">Background <img src="https://static.igem.org/mediawiki/2019/b/b7/T--DUT_China_B--difficultities.svg" class="icon"> </h1>
<div class="column third_size">
+
               
<div class="highlight decoration_A_full">
+
<p style="font-family: 'Times New Roman' !important; ">When synthetic materials are difficult to meet the needs of control and loading, scientists have long thought of loading and modifying biological cells or molecules, using their own characteristics to operate on a small scale. Whether it is micro-nano manufacturing, precision medicine, single cell sorting or targeted drug loading, easy to manipulate micro-nano-scale robots have irreplaceable advantages. Depending on the invasiveness of the bacteria, the ability of the virus to transduce and self-replicate, the membrane encapsulation and drug loading capacity of the cells, different cells or biomolecules have been developed for micro-nano robots for specific application scenarios for targeted drug delivery. Or gene, cell therapy. The tiny size and control system of micro-nano robots make it a powerful tool for precision medical applications.</p>
<h3>Inspiration</h3>
+
              <p>Rigid micro-robots developed in the field of machine engineering have the best accuracy and control under programmable and automated operation, but are limited to the composition of mechanical control systems covering sensors, actuators and control circuits. The size of rigid robots is difficult to control in millimeters. Energy supply below the level and difficult to obtain wireless and reasonable output; poor biocompatibility of rigid mechanical materials also limits the development of mechanical micro-robots in the medical field. Compared with mechanical micro-nano robots, biological cells with micro-nano size and self-sufficient growth have a complete control system at the micro-nano scale, and the cell's own energy conversion system solves the micro-nano robot energy supply problem, which is also easier to carry out. Expression modification of drug proteins. </P>
<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
+
                <P> However, due to the uncertainty of the living body, the precise control of the cell micro-nano robot has become a major problem in the development of cell micro-nano robots. The control of cell mobility is one of the difficulties. One is limited to the weaker mobility of the cells themselves, and the other is limited to the sensing and motion control methods of the cells. At present, the commonly used methods are control of light, magnetism, material wrapping, etc. However, magnetic control requires more complicated external equipment and computer algorithms. The material wrapping needs to make more modifications to the cells, which may affect the activity of the cells, and may cause in vivo. Problems such as residual material modification, potential damage to the human body. Light control is a relatively convenient method of control, but still requires a more transparent application environment.</p>
 
+
<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
+
</div>
<ul>
+
<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
+
<div class="cart" >
<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
+
              <h1 style="font-family: 'JosefinSans-Light' !important; ">Chlamydomonas reinhardtii<img src="https://static.igem.org/mediawiki/2019/a/a2/T--DUT_China_B--wei.svg" class="icon"> </h1>
<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
+
               
</ul>
+
<p >Chlamydomonas reinhardtii is a single-cell photoautotrophic eukaryote with the ability to accurately fold and assemble complex proteins. It can be used to express various complex proteins and high-value products. It is known as “green yeast”. It is said that the complete sequencing of the nuclear genome, chloroplast genome and mitochondrial genome and genetic transformation under three genomes are the most clear photosynthetic autotrophic eukaryotic substrates. Chlamydomonas cells have two flagellae, which are highly mobile and have a blue-light sensing system. They have the advantages of carrying protein-loading drugs and the potential for transformation using light control. They are characterized by the use of micro-nano robots. Good chassis creatures. Therefore, we hope to use Chlamydomonas as a chassis and modify it with its own strong mobility to solve the problem of mobility control of cellular nano-robots in applications.</p>
</div>
+
                      <div style="text-align: center; width: 100%; ">
</div>
+
                <img alt="" src="https://static.igem.org/mediawiki/2019/b/b5/T--DUT_China_B--move1.gif" style="display: inline-block;width:50%;" />               <p style="text-align: center;">Chlamydomonas reinhardtii with strong mobility</p>
 
+
                </div>
 
+
                <p>The optical control system has the advantages of simple equipment, wireless control, good penetrability, etc., and Chlamydomonas itself has a blue light sensing system, so that the control of the movement of Chlamydomonas cells can be more fully utilized. Since cell micro-nano robots are mainly used in the medical field for targeted therapy, red light is more penetrating than other light tissues and is the most commonly used optical means in the medical field. Therefore, we hope to achieve red color in Chlamydomonas cells. The engineering of light control movement.</p>
<div class="clear extra_space"></div>
+
                <p>To achieve the kinetic control of Chlamydomonas, how to transform its endogenous motion control and light perception system is the most effective means to achieve our transformation goals. However, because the movement of Chlamydomonas cells is controlled by two flagella, there are three different movement modes of swimming, fluctuation, and sliding under different conditions, and the movement mechanism is complicated. The specific molecular regulation network of two flagella in Chlamydomonas has not been obtained yet. Clear interpretation. Therefore, we cannot start from the molecular mechanism of the Chlamydomonasis movement. In the blue light sensing system of Chlamydomonas, we have learned that the eye spots of Chlamydomonas are used for blue light perception, and then the light signal is transmitted to the flagella to regulate the different movements of the two flagella under the action of the second messenger molecule. Therefore, we try to activate the Chlamydomonas light perception system from the light-gated ion channel at the eye spot to achieve the motion control of Chlamydomonas. But unfortunately, the mutants of the light-gated ion channels have limited redshift range, and we have not been able to find other substances that specifically activate or inhibit the rhodopsin of the Chlamydomonas channel, but only the general purpose of the cells. The second messenger molecule has a regulatory effect on it. We are unable to control the transformation of the universal messenger molecules in the cell, as this can distort the growth regulation of Chlamydomonas cells. So we have to give up on this idea.</P>
 
+
            <p>After encountering a bottleneck in the molecular mechanism transformation, we tried to find a simpler way to control the algae.We have considered that since the channel of rhodopsin is excited by blue light, in the literature search, we have learned the research method of split protein and found the work of splitting luciferase for protein interaction. It is noted that the catalytic reaction of luciferase can produce blue light. We associate it with the possibility of combining red-controlled polymerized proteins with split luciferase. This enables the generation of blue light under red light control. We call this a molecular light converter. By expressing this molecular light converter in Chlamydomonas cells, we can achieve the excitation of endogenous blue light in Chlamydomonas cells, thus realizing the activation and motion control of Chlamydomonas light perception system. Our solution is thus generated.</P>
 
+
<table><tr>
 
+
        <td><img src="https://static.igem.org/mediawiki/2019/6/6c/T--DUT_China_B--molecular_light_converter_1.jpg" border=0></td>
 
+
        <td><img src=" https://static.igem.org/mediawiki/2019/8/82/T--DUT_China_B--molecular_light_converter_2.jpg" border=0></td>
<div class="column full_size">
+
        <td><img src="https://static.igem.org/mediawiki/2019/f/f1/T--DUT_China_B--molecular_light_converter_3.jpg" border=0></td>
 
+
        </tr></table>  
<h3>What information do I need to start putting my parts on the Registry?</h3>
+
          <p style="text-align: center;">Molecular light converter</p>
<p>The information needed to initially create a part on the Registry is:</p>
+
      </div>
<ul>
+
       
<li>Part Name</li>
+
<hr>
<li>Part type</li>
+
<li>Creator</li>
+
<li>Sequence</li>
+
<li>Short Description (60 characters on what the DNA does)</li>
+
<li>Long Description (Longer description of what the DNA does)</li>
+
<li>Design considerations</li>
+
</ul>
+
 
+
<p>
+
We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, you must also put it up on the part page. </p>
+
 
+
</div>
+
 
+
 
+
<div class="clear extra_space"></div>
+
<div class="line_divider"></div>
+
<div class="clear extra_space"></div>
+
 
+
<div class="column full_size">
+
<h3>Part Table </h3>
+
 
+
<p>Please include a table of all the parts your team has made during your project on this page. Remember part characterization and measurement data must go on your team part pages on the Registry. </p>
+
 
+
</html>
+
<groupparts>iGEM19 DUT_China_B</groupparts>
+
<html>
+
</div>
+
 
+
  
 +
</div>
 +
<script type="text/javascript">
  
 +
window.onload=function(){
 +
  map_height=document.documentElement.clientHeight;//获取页面可见高度
 +
 
 +
  document.getElementById("sides").style.height=map_height+"px";
 +
  }
 +
  function getScrollTop(){
 +
var scrollTop=0;
 +
if(document.documentElement.scrollTop){
 +
scrollTop=document.documentElement.scrollTop;
 +
}else if(document.body){
 +
scrollTop=document.body.scrollTop;
 +
}
 +
return scrollTop;
 +
}
 +
document.onscroll = function(){
 +
console.log(getScrollTop())
 +
if(getScrollTop()>(map_height+170)) {
 +
document.getElementById("sides").style.position="fixed";
 +
document.getElementById("sides").style.top="0";
 +
document.getElementById("sides").style.left="0";
 +
}else{
 +
document.getElementById("sides").style.position = 'static';
 +
 +
}
 +
</script>
  
 +
</body>
 
</html>
 
</html>

Revision as of 14:55, 19 October 2019

Document
parts

Inspiration

Have you ever seen the movie from MCU Antman? Imagine if the ant man's suit in the Marvel movie really exists in life,we can turn incredibly small, even to quantum scale, like the Antman who can get into Ironman’s suit and disable it in a minute, or sneak into a machine and fix it from the inside! We will have the opportunity to observe and even manipulate the world from an extremely microscopic perspective! Although the current technological development has not reached this level, it does not prevent us from exerting such bold imagination and trying to transform anything that might be used as a micro-robot. The cell is no doubt the finest complete living body and the most delicate control system we know. It is no exaggeration to compare it to a delicate life robot. But if we want natural cells to fully perform the functions we expect, the most viable way is to transform cells like machines. Cellular micro-robots have greatly attracted our attention, and we are excited to imagine such a steerable micro-robot and direct it for us. Synthetic biology is providing us with a way to build cell loops and transform cells according to our wishes, so this year, we can't wait to use synthetic biology to build such a controllable cell micro-nano robot.


nanorobot

Background

When synthetic materials are difficult to meet the needs of control and loading, scientists have long thought of loading and modifying biological cells or molecules, using their own characteristics to operate on a small scale. Whether it is micro-nano manufacturing, precision medicine, single cell sorting or targeted drug loading, easy to manipulate micro-nano-scale robots have irreplaceable advantages. Depending on the invasiveness of the bacteria, the ability of the virus to transduce and self-replicate, the membrane encapsulation and drug loading capacity of the cells, different cells or biomolecules have been developed for micro-nano robots for specific application scenarios for targeted drug delivery. Or gene, cell therapy. The tiny size and control system of micro-nano robots make it a powerful tool for precision medical applications.

Rigid micro-robots developed in the field of machine engineering have the best accuracy and control under programmable and automated operation, but are limited to the composition of mechanical control systems covering sensors, actuators and control circuits. The size of rigid robots is difficult to control in millimeters. Energy supply below the level and difficult to obtain wireless and reasonable output; poor biocompatibility of rigid mechanical materials also limits the development of mechanical micro-robots in the medical field. Compared with mechanical micro-nano robots, biological cells with micro-nano size and self-sufficient growth have a complete control system at the micro-nano scale, and the cell's own energy conversion system solves the micro-nano robot energy supply problem, which is also easier to carry out. Expression modification of drug proteins.

However, due to the uncertainty of the living body, the precise control of the cell micro-nano robot has become a major problem in the development of cell micro-nano robots. The control of cell mobility is one of the difficulties. One is limited to the weaker mobility of the cells themselves, and the other is limited to the sensing and motion control methods of the cells. At present, the commonly used methods are control of light, magnetism, material wrapping, etc. However, magnetic control requires more complicated external equipment and computer algorithms. The material wrapping needs to make more modifications to the cells, which may affect the activity of the cells, and may cause in vivo. Problems such as residual material modification, potential damage to the human body. Light control is a relatively convenient method of control, but still requires a more transparent application environment.

Chlamydomonas reinhardtii

Chlamydomonas reinhardtii is a single-cell photoautotrophic eukaryote with the ability to accurately fold and assemble complex proteins. It can be used to express various complex proteins and high-value products. It is known as “green yeast”. It is said that the complete sequencing of the nuclear genome, chloroplast genome and mitochondrial genome and genetic transformation under three genomes are the most clear photosynthetic autotrophic eukaryotic substrates. Chlamydomonas cells have two flagellae, which are highly mobile and have a blue-light sensing system. They have the advantages of carrying protein-loading drugs and the potential for transformation using light control. They are characterized by the use of micro-nano robots. Good chassis creatures. Therefore, we hope to use Chlamydomonas as a chassis and modify it with its own strong mobility to solve the problem of mobility control of cellular nano-robots in applications.

Chlamydomonas reinhardtii with strong mobility

The optical control system has the advantages of simple equipment, wireless control, good penetrability, etc., and Chlamydomonas itself has a blue light sensing system, so that the control of the movement of Chlamydomonas cells can be more fully utilized. Since cell micro-nano robots are mainly used in the medical field for targeted therapy, red light is more penetrating than other light tissues and is the most commonly used optical means in the medical field. Therefore, we hope to achieve red color in Chlamydomonas cells. The engineering of light control movement.

To achieve the kinetic control of Chlamydomonas, how to transform its endogenous motion control and light perception system is the most effective means to achieve our transformation goals. However, because the movement of Chlamydomonas cells is controlled by two flagella, there are three different movement modes of swimming, fluctuation, and sliding under different conditions, and the movement mechanism is complicated. The specific molecular regulation network of two flagella in Chlamydomonas has not been obtained yet. Clear interpretation. Therefore, we cannot start from the molecular mechanism of the Chlamydomonasis movement. In the blue light sensing system of Chlamydomonas, we have learned that the eye spots of Chlamydomonas are used for blue light perception, and then the light signal is transmitted to the flagella to regulate the different movements of the two flagella under the action of the second messenger molecule. Therefore, we try to activate the Chlamydomonas light perception system from the light-gated ion channel at the eye spot to achieve the motion control of Chlamydomonas. But unfortunately, the mutants of the light-gated ion channels have limited redshift range, and we have not been able to find other substances that specifically activate or inhibit the rhodopsin of the Chlamydomonas channel, but only the general purpose of the cells. The second messenger molecule has a regulatory effect on it. We are unable to control the transformation of the universal messenger molecules in the cell, as this can distort the growth regulation of Chlamydomonas cells. So we have to give up on this idea.

After encountering a bottleneck in the molecular mechanism transformation, we tried to find a simpler way to control the algae.We have considered that since the channel of rhodopsin is excited by blue light, in the literature search, we have learned the research method of split protein and found the work of splitting luciferase for protein interaction. It is noted that the catalytic reaction of luciferase can produce blue light. We associate it with the possibility of combining red-controlled polymerized proteins with split luciferase. This enables the generation of blue light under red light control. We call this a molecular light converter. By expressing this molecular light converter in Chlamydomonas cells, we can achieve the excitation of endogenous blue light in Chlamydomonas cells, thus realizing the activation and motion control of Chlamydomonas light perception system. Our solution is thus generated.

Molecular light converter