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Difference between revisions of "Team:Tuebingen/einweiterer"

 
(8 intermediate revisions by the same user not shown)
Line 1,714: Line 1,714:
 
         .offset-xl-11 {
 
         .offset-xl-11 {
 
             margin-left: 91.666667%
 
             margin-left: 91.666667%
 +
        }
 +
    }
 +
 +
    .veggie {
 +
        width: 100%;
 +
        max-width: 100%;
 +
        margin-bottom: 1rem;
 +
        background-color: transparent;
 +
        z-index:100;
 +
    }
 +
    .veggie td,
 +
    .veggie th {
 +
        padding: .75rem;
 +
        vertical-align: top;
 +
        border-top: 1px solid #F4F0DE;
 +
        color: #F4F0DE;
 +
        border-bottom: 1px solid #F4F0DE;
 +
        z-index:100;
 +
    }
 +
    .veggie th {
 +
        background-color: #2ecc71 !important;
 +
        color: #232323 !important;
 +
        z-index:100;
 +
    }
 +
    .veggie caption {
 +
        color: #adb3b7;
 +
        z-index:100;
 +
    }
 +
    .veggie thead th {
 +
        vertical-align: bottom;
 +
        border-bottom: 2px solid #dee2e6;
 +
        z-index:100;
 +
    }
 +
    .veggie tbody+tbody {
 +
        border-top: 2px solid #dee2e6;
 +
        z-index:100;
 +
    }
 +
 +
    @media screen and (max-width: 800px) {
 +
        .veggie {
 +
            font-size: xx-small;
 +
            z-index:100;
 
         }
 
         }
 
     }
 
     }
Line 1,916: Line 1,958:
 
             display: block;
 
             display: block;
 
             width: 100%;
 
             width: 100%;
             overflow-x: auto;
+
             overflow-x: break-words;
 
             -webkit-overflow-scrolling: touch;
 
             -webkit-overflow-scrolling: touch;
 
             -ms-overflow-style: -ms-autohiding-scrollbar
 
             -ms-overflow-style: -ms-autohiding-scrollbar
Line 1,930: Line 1,972:
 
             display: block;
 
             display: block;
 
             width: 100%;
 
             width: 100%;
             overflow-x: auto;
+
             overflow-x: break-words;
 
             -webkit-overflow-scrolling: touch;
 
             -webkit-overflow-scrolling: touch;
 
             -ms-overflow-style: -ms-autohiding-scrollbar
 
             -ms-overflow-style: -ms-autohiding-scrollbar
Line 1,944: Line 1,986:
 
             display: block;
 
             display: block;
 
             width: 100%;
 
             width: 100%;
             overflow-x: auto;
+
             overflow-x: break-words;
 
             -webkit-overflow-scrolling: touch;
 
             -webkit-overflow-scrolling: touch;
 
             -ms-overflow-style: -ms-autohiding-scrollbar
 
             -ms-overflow-style: -ms-autohiding-scrollbar
Line 6,034: Line 6,076:
  
 
     .bg-dark {
 
     .bg-dark {
         background-color: #343a40 !important
+
         background-color: #232323 !important
 
     }
 
     }
  
Line 9,283: Line 9,325:
  
 
     .dropdown-menu {
 
     .dropdown-menu {
         background-color: rgba(100, 100, 100, 1);
+
         background-color: #232323;
 
     }
 
     }
  
Line 10,240: Line 10,282:
 
                 <li id="ourStoryButton" class="nav-item mx-3">
 
                 <li id="ourStoryButton" class="nav-item mx-3">
 
                     <a class="nav-link" href="/Team:Tuebingen/Story"
 
                     <a class="nav-link" href="/Team:Tuebingen/Story"
                       style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">OUR STORY</a>
+
                       style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">OUR
 +
                        STORY</a>
 
                 </li>
 
                 </li>
  
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                         <a class="dropdown-item" href="/Team:Tuebingen/Incretin"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Incretin"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Incretin</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Incretin</a>
                         <a class="dropdown-item" href="/Team:Tuebingen/CPP"
+
                         <a class="dropdown-item" href="/Team:Tuebingen/Model"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Cell Penetrating Peptides</a>
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Model</a>
 +
                        <a class="dropdown-item" href="/Team:Tuebingen/Software"
 +
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Software</a>
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Results"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Results"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Results</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Results</a>
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                         <a class="dropdown-item" href="/Team:Tuebingen/Notebook"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Notebook"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Notebook</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Notebook</a>
                        <a class="dropdown-item" href="/Team:Tuebingen/Model"
 
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Model</a>
 
                        <a class="dropdown-item" href="/Team:Tuebingen/Software"
 
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Software</a>
 
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Outlook"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Outlook"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Outlook</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Outlook</a>
 +
                        <a class="dropdown-item" href="/Team:Tuebingen/Entrepreneurship"
 +
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Entrepreneurship</a>
 
                     </div>
 
                     </div>
 
                 </li>
 
                 </li>
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                     <div class="dropdown-menu">
 
                     <div class="dropdown-menu">
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Parts"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Parts"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Parts Overview</a>
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Parts
 +
                            Overview</a>
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Basic_Part"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Basic_Part"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Basic Parts</a>
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Basic
 +
                            Parts</a>
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Improved_Part"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Improved_Part"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Improved Parts</a>
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Improved
 +
                            Parts</a>
 +
                        <a class="dropdown-item" href="/Team:Tuebingen/Characterized_Part"
 +
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Improved
 +
                            Parts</a>
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Composite_Part"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Composite_Part"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Composite Parts</a>
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Composite
 +
                            Parts</a>
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Part_Collection"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Part_Collection"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Part Collection</a>
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Part
 +
                            Collection</a>
 +
                        <a class="dropdown-item" href="/Team:Tuebingen/Downloads"
 +
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Downloads</a>
 
                     </div>
 
                     </div>
 
                 </li>
 
                 </li>
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                         <a class="dropdown-item" href="/Team:Tuebingen/Collaborations"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Collaborations"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Collaborations</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Collaborations</a>
                        <a class="dropdown-item" href="/Team:Tuebingen/Attributions"
 
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Attributions</a>
 
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Sponsors"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Sponsors"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Sponsors</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Sponsors</a>
 +
                        <a class="dropdown-item" href="/Team:Tuebingen/Attributions"
 +
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Attributions</a>
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Gallery"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Gallery"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Gallery</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Gallery</a>
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                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Overview</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Overview</a>
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Public_Engagement"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Public_Engagement"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Education & Public
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Education & Public Engagement</a>
                            Engagement</a>
+
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Experts"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Experts"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Experts</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Experts</a>
                        <a class="dropdown-item" href="/Team:Tuebingen/Entrepreneurship"
 
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Entrepreneurship</a>
 
 
                         <a class="dropdown-item" href="/Team:Tuebingen/SDG"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/SDG"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Sustainable Development
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Sustainable Development Goals</a>
                            Goals</a>
+
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Experimenta"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Experimenta"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Experimenta Science
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Experimenta
                             Center</a>
+
                             Science Center</a>
 +
                        <a class="dropdown-item" href="/Team:Tuebingen/Survey"
 +
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Survey</a>
 
                     </div>
 
                     </div>
 
                 </li>
 
                 </li>
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                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Integrated Human Practise</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Integrated Human Practise</a>
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Public_Engagement"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Public_Engagement"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Education & Public
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Education & Public Engagement</a>
                            Engagement</a>
+
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Entrepreneurship"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Entrepreneurship"
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Supporting
+
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Supporting Entrepreneurship</a>
                            Entrepreneurship</a>
+
                        <a class="dropdown-item" href="/Team:Tuebingen/Measurement"
+
                          style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Measurement</a>
+
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Model"
 
                         <a class="dropdown-item" href="/Team:Tuebingen/Model"
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Model</a>
 
                           style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">Model</a>
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                 <li class="nav-item mx-3">
 
                 <li class="nav-item mx-3">
 
                     <a class="nav-link" href="https://igem.org/2019_Judging_Form?team=Tuebingen" target="_blank"
 
                     <a class="nav-link" href="https://igem.org/2019_Judging_Form?team=Tuebingen" target="_blank"
                       style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">JUDGING
+
                       style="font-family: 'Righteous', cursive; font-weight: normal; color: #2ecc71;">JUDGING FORM ⇗</a>
                        FORM ⇗</a>
+
 
                 </li>
 
                 </li>
  
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         -webkit-transform: translateZ(0) scale(1.0, 1.0);
 
         -webkit-transform: translateZ(0) scale(1.0, 1.0);
 
         transform: translateZ(0);
 
         transform: translateZ(0);
         background: #1B2030 url(https://2019.igem.org/wiki/images/a/a0/T--Tuebingen--description-banner.jpg) center no-repeat;
+
         background: #1B2030 url(https://2019.igem.org/wiki/images/5/50/T--Tuebingen--experimenta-banner.jpg) center no-repeat;
 
         background-size: 100%, 100%;
 
         background-size: 100%, 100%;
 
         animation: grow 30s linear 10ms infinite;
 
         animation: grow 30s linear 10ms infinite;
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         }
 
         }
  
        .header {
+
 
            height:40vh
+
        }
+
 
     }
 
     }
  
    @media only screen and (max-width: 600px) {
+
 
        .header {
+
            height:35vh
+
        }
+
    }
+
  
 
     @media only screen and (max-width: 560px) {
 
     @media only screen and (max-width: 560px) {
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             margin-top: 15%;
 
             margin-top: 15%;
 
         }
 
         }
    }
 
 
    @media only screen and (max-width: 500px) {
 
 
         .header {
 
         .header {
             height:30vh
+
             height: 40vh;
 
         }
 
         }
 
     }
 
     }
 +
 +
  
 
     @media only screen and (max-width: 470px) {
 
     @media only screen and (max-width: 470px) {
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     }
 
     }
  
    @media only screen and (max-width: 450px) {
+
 
        .header {
+
            height:25vh
+
        }
+
    }
+
  
 
     @media only screen and (max-width: 400px) {
 
     @media only screen and (max-width: 400px) {
 
         .info h1 {
 
         .info h1 {
             margin-top: 15%;
+
             margin-top: 20%;
 +
        }
 +
        .header {
 +
            height: 27vh;
 
         }
 
         }
 
     }
 
     }
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     @media only screen and (max-width: 350px) {
 
     @media only screen and (max-width: 350px) {
 
         .info h1 {
 
         .info h1 {
             margin-top: 18%;
+
             margin-top: 25%;
 
         }
 
         }
 
     }
 
     }
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<div class="header">
 
<div class="header">
 
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     <h1 style="font-family: 'Righteous', cursive; font-weight: normal; color:#2ecc71;">Nissle</h1>
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     <h1 style="font-family: 'Righteous', cursive; font-weight: normal; color:#2ecc71;">Experimenta</h1>
 
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         <h2 style="font-family:'Righteous'; color:#2ecc71;">Introduction</h2>
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         <h2 style="font-family:'Righteous'; color:#2ecc71;">The Experimenta Science Center Heilbronn</h2>
 
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                 <p>
 
                 <p>
                     Escherichia coli Nissle 1917 (EcN) is probably the most intensively investigated bacterial strain
+
                     The Experimenta Science Center (<a href="https://www.experimenta.science/" onclick='window.open("https://www.experimenta.science/","_self");'>Experimenta</a>) in Heilbronn, Baden-Wuerttemberg,
                     today[1]. Despite the fact that the EcN strain is widely used as a probiotic, a lot of questions
+
                     Germany offers science at your fingertips on an area of around 25,000 square metres with around 275
                     remain. That is why we decided to dive deep into the characterization of EcN. Our goal was to find
+
                    interactive exhibits, four creative studios and nine laboratories, as well as an observatory and an
                     out more about EcN itself and to provide crucial information in order to include EcN as platform
+
                    extraordinary science dome with spectacular science shows. Additionally, last year, they set up the
                    organism for other iGEM Teams and researchers.
+
                    “Schülerforschungszentrum” (SFZ), where young researchers are actively supported in their initial
 +
                     scientific work. It is directed at students from high schools in Heilbronn. Their general idea is to
 +
                     encourage students to develop their own projects while funding, lab space and supervision is granted.
 
                 </p>
 
                 </p>
 
             </div>
 
             </div>
 
         </div>
 
         </div>
  
             <h2 style="font-family:'Righteous'; color:#2ecc71;">Growth Curves</h2>
+
             <h2 style="font-family:'Righteous'; color:#2ecc71;">Our 4 Day Lab Course</h2>
 
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                 <div class="col-12">
 
                 <div class="col-12">
                     <p>
+
                     <p>The course was held in a collaborative manner over a span of four days. Dr. Robert Friedrich,
                        The first step in the characterization of a bacterium are growth curves on different media and
+
                         a biologist working for the SFZ, gave the general lab introduction and provided the overall lab
                         under different conditions. We chose to perform half of our experiments under aerobic and the
+
                         responsibility, while we were mainly responsible to teach the required theoretical background,
                         other half under anaerobic conditions. Under aerobic conditions, as a control we let EcN grow in
+
                         introduce bioinformatics data analysis (DNA-Seq) and finally project development. Additionally,
                         LB medium at 37°C and pH7. We changed the temperature to 25°C, 8°C, 4°C and 0°C, showing that
+
                         we were supporting Dr. Friedrich during the experiments and closely supervised the students.</p>
                         EcN growth is inhibited at 8°C, the temperature often used for cold shock.
+
                </div>
                    </p>
+
            </div>
 
+
            <div class="row">
                     <figure>
+
                <div class="col-12">
 +
                     <div class="row align-items-center">
 +
        <div class="col-12 col-md-6">
 +
        <figure>
 
                         <a style="font-size: small"
 
                         <a style="font-size: small"
                           href="https://2019.igem.org/wiki/images/b/b5/T--Tuebingen--pH7-diff-Temp-white.png"
+
                           href="https://2019.igem.org/wiki/images/e/e8/T--Tuebingen--Experimenta-Lab4.png"
 
                           data-effect="mfp-zoom-out"
 
                           data-effect="mfp-zoom-out"
 
                           title="Some title">
 
                           title="Some title">
                             <img src="https://2019.igem.org/wiki/images/b/b5/T--Tuebingen--pH7-diff-Temp-white.png"
+
                             <img src="https://2019.igem.org/wiki/images/e/e8/T--Tuebingen--Experimenta-Lab4.png"
 
                                 class="figure-img img-fluid rounded"
 
                                 class="figure-img img-fluid rounded"
                                 alt="A generic square placeholder"></a>
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                                 alt="Placeholder"></a>
                        <figcaption style="font-size: small; color: #F4F0DE">Fig. 1: EcN growth in LB medium at pH7. All cultures were
+
                            inoculated with an overnight culture and grown for 120 minutes at 37°C. Next, temperature was
+
                            changed to 0°C, 4°C, 8°C and 25°C, while one control was kept at 37°C.
+
                            Shown are mean values of triplicates.</figcaption>
+
 
                     </figure>
 
                     </figure>
  
                    <p>
+
        </div>
                        Moreover, we evaluated the growth in the pH range from pH6 to pH1, since in our application EcN
+
        <div class="col-12 col-md-6 ">
                        will have to pass the acidity of the stomach. Here, at pH4 we discovered an interesting recovery
+
        <p>We conveyed the required theoretical background in a modern and interactive way, with the use of
                        of EcN growth after three hours.
+
            smart boards and current web tools. We focused on teaching the highly motivated students cutting-edge
                     </p>
+
            research, while providing a theoretical foundation, preparing them for different biology competitions
 +
            and eventually university.</p>
 +
        </div>
 +
                     </div>
 +
                </div>
 +
            </div>
  
                     <figure>
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            <div class="row">
 +
                <div class="col-12">
 +
                     <div class="row align-items-center">
 +
        <div class="col-12 col-md-6">
 +
        <figure>
 
                         <a style="font-size: small"
 
                         <a style="font-size: small"
                           href="https://2019.igem.org/wiki/images/c/cf/T--Tuebingen--37-diff-pH-white.png"
+
                           href="https://2019.igem.org/wiki/images/9/94/T--Tuebingen--Experimenta-Lab3.png"
 
                           data-effect="mfp-zoom-out"
 
                           data-effect="mfp-zoom-out"
 
                           title="Some title">
 
                           title="Some title">
                             <img src="https://2019.igem.org/wiki/images/c/cf/T--Tuebingen--37-diff-pH-white.png"
+
                             <img src="https://2019.igem.org/wiki/images/9/94/T--Tuebingen--Experimenta-Lab3.png"
 
                                 class="figure-img img-fluid rounded"
 
                                 class="figure-img img-fluid rounded"
                                 alt="A generic square placeholder"></a>
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                                 alt="Placeholder"></a>
                        <figcaption style="font-size: small; color: #F4F0DE">Fig. 2: EcN growth curve in LB at 37°C under
+
                            different pH levels. Until 120min all cultures inoculated from one overnight culture grew at pH7.
+
                            Then, media was changed to the respective pH and cultures were grown for 3 hours. pH5 and pH6
+
                            grew as usual, pH1,2,3 did not grow at all, while pH4 started to grow after 3 hours. Thus,
+
                            media was changed again after 3 hours to pH7. pH6 and pH5 grew as usual, pH1,2,3 did not
+
                            recover. Cultures grown in pH4 recovered and grew as usual. Shown are values of one culture
+
                            for each pH.</figcaption>
+
 
                     </figure>
 
                     </figure>
  
                    <figure>
+
        </div>
 +
        <div class="col-12 col-md-6 ">
 +
        <figure>
 
                         <a style="font-size: small"
 
                         <a style="font-size: small"
                           href="https://2019.igem.org/wiki/images/b/b8/T--Tuebingen--pH4-3x-37-white.png"
+
                           href="https://2019.igem.org/wiki/images/6/69/T--Tuebingen--Experimenta-Lab5.png"
 
                           data-effect="mfp-zoom-out"
 
                           data-effect="mfp-zoom-out"
 
                           title="Some title">
 
                           title="Some title">
                             <img src="https://2019.igem.org/wiki/images/b/b8/T--Tuebingen--pH4-3x-37-white.png"
+
                             <img src="https://2019.igem.org/wiki/images/6/69/T--Tuebingen--Experimenta-Lab5.png"
 
                                 class="figure-img img-fluid rounded"
 
                                 class="figure-img img-fluid rounded"
                                 alt="A generic square placeholder"></a>
+
                                 alt="Placeholder"></a>
                        <figcaption style="font-size: small; color: #F4F0DE">Fig. 3: EcN growth in LB at 37°C with pH
+
                            changed from pH7 to pH4 after two hours of growth. After 150 minutes within pH4,
+
                            EcN started to grow comparable to pH7 cultures. Shown are the three cultures inoculated
+
                            from the same overnight culture of EcN.</figcaption>
+
 
                     </figure>
 
                     </figure>
 +
        </div>
 +
                    </div>
 
                     <p>
 
                     <p>
                         To look into inflammatory stress, we subjected EcN to up to 100µM hydrogen peroxide [2] and showed
+
                         Please check out the material we prepared for the course - a script covering all the theoretical
                         that the growth is not  substantially influenced by it.
+
                         background and a presentation:
 
                     </p>
 
                     </p>
                     <figure>
+
                     <ul style="color:#F4F0DE;">
                        <a style="font-size: small"
+
                      <li><a href="https://2019.igem.org/wiki/images/6/6c/T--Tuebingen--Experimenta_Labkurs_Skript.pdf" onclick='window.open("https://2019.igem.org/wiki/images/6/6c/T--Tuebingen--Experimenta_Labkurs_Skript.pdf","_self");'>Experimenta Labkurs</a></li>
                          href="https://2019.igem.org/wiki/images/b/bf/T--Tuebingen--H2O2-triplicates-white.png"
+
                      <li><a href="https://2019.igem.org/wiki/images/1/10/T--Tuebingen--LabCoursePresentation.pdf" onclick='window.open("https://2019.igem.org/wiki/images/1/10/T--Tuebingen--LabCoursePresentation.pdf","_self");'>LabCourse Presentation</a>)</li>
                          data-effect="mfp-zoom-out"
+
                    </ul>
                          title="Some title">
+
                            <img src="https://2019.igem.org/wiki/images/b/bf/T--Tuebingen--H2O2-triplicates-white.png"
+
                                class="figure-img img-fluid rounded"
+
                                alt="A generic square placeholder"></a>
+
                        <figcaption style="font-size: small; color: #F4F0DE">Fig. 4: EcN growth in different concentrations
+
                            of Hydrogen Peroxide, infused after two hours of growth at 37°C, pH7 in LB medium. 100µM Hydrogen
+
                            Peroxide with slightly inhibited growth. Shown are the means of triplicates for each concentration.</figcaption>
+
                    </figure>
+
 
                     <p>
 
                     <p>
                         Lastly, we performed dryfreezing and recovered EcN afterwards under control conditions [3][4][5],
+
                         Please see the schedule below.
                        showing that dryfreezing within skim milk protects the bacteria from substantial death.
+
 
                     </p>
 
                     </p>
 +
                </div>
 +
            </div>
  
 +
            <div class="row">
 +
                <div class="col-12">
 
                     <figure>
 
                     <figure>
 
                         <a style="font-size: small"
 
                         <a style="font-size: small"
                           href="https://2019.igem.org/wiki/images/9/90/T--Tuebingen--Dryfreeze-white.png"
+
                           href="https://2019.igem.org/wiki/images/f/f1/T--Tuebingen--table_test.png"
 
                           data-effect="mfp-zoom-out"
 
                           data-effect="mfp-zoom-out"
 
                           title="Some title">
 
                           title="Some title">
                             <img src="https://2019.igem.org/wiki/images/9/90/T--Tuebingen--Dryfreeze-white.png"
+
                             <img src="https://2019.igem.org/wiki/images/f/f1/T--Tuebingen--table_test.png"
 
                                 class="figure-img img-fluid rounded"
 
                                 class="figure-img img-fluid rounded"
                                 alt="A generic square placeholder"></a>
+
                                 alt="Placeholder"></a>
                        <figcaption style="font-size: small; color: #F4F0DE">Fig. 5: EcN growth of cultures previously
+
                            subjected to a dryfreeze protocol. Shown are the mean values of triplicates of cultures
+
                            grown at 37°C, pH7 in LB grown for recovery.</figcaption>
+
 
                     </figure>
 
                     </figure>
                    <p>
+
                </div>
                        Anaerobic conditions were used to characterize EcN growth under the circumstances provided in
+
            </div>
                        the human intestines. Thus, as a control we compared EcN growth in LB medium versus mGAM medium
+
 
                        under anaerobic conditions, showing that mGAM, a medium designed for anaerobic application,
+
            <div class="row">
                        is in fact a more suitable medium.  Then, we subjected the bacteria to metformin treatment,
+
                <div class="col-12">
                        since it is one of the most common treatments of diabetes and is known to accumulate to 720 µM
+
                    <p>Due to the interactive design of the course, we also discussed the experiments with the students
                        to 7,2 mM within the intestines due to low bioavailability. [6][7].  We showed that EcN growth
+
                         and tried to summarize what we did on the blackboard:</p>
                        is not substantially influenced by 1,3 mM of metformin into mGAM medium. Moreover, we tested for
+
 
                        EcN’s resistance against cholic acid, since it is commonly secreted into the ileum. Here, we
+
                     <div class="row align-items-center">
                        added 0.25 mM of cholic acid to mGAM medium, considering that the concentration of free bile
+
        <div class="col-12 col-md-6">
                         salts may rise to 0.25 to 1 mM of total bile salts in the Ileum, with cholic acid only being
+
        <figure>
                        one component [8][9]. Our results suggest that EcN growth is not greatly influenced by cholic acid.
+
                     </p>
+
                    <figure>
+
 
                         <a style="font-size: small"
 
                         <a style="font-size: small"
                           href="https://2019.igem.org/wiki/images/b/b2/T--Tuebingen--anaerobic-all-4x-white.png"
+
                           href="https://2019.igem.org/wiki/images/b/be/T--Tuebingen--Experimenta-Lab1.png"
 
                           data-effect="mfp-zoom-out"
 
                           data-effect="mfp-zoom-out"
 
                           title="Some title">
 
                           title="Some title">
                             <img src="https://2019.igem.org/wiki/images/b/b2/T--Tuebingen--anaerobic-all-4x-white.png"
+
                             <img src="https://2019.igem.org/wiki/images/b/be/T--Tuebingen--Experimenta-Lab1.png"
 
                                 class="figure-img img-fluid rounded"
 
                                 class="figure-img img-fluid rounded"
                                 alt="A generic square placeholder"></a>
+
                                 alt="Placeholder"></a>
                        <figcaption style="font-size: small; color: #F4F0DE">Fig. 6: EcN growth under four anaerobic
+
                            conditions compared to EcN aerobic growth. Shown are the mean values of four samples
+
                            inoculated with the same overnight culture. Experiments were conducted at 37°C and pH7.
+
                            LB aerobic growth as a control. Other samples are LB anaerobic growth, mGAM anaerobic
+
                            growth, as well as mGAM medium supplemented with either 1.3 mM Metformin or 0.25mM Cholic
+
                            Acid. Samples for RNA sequencing were taken after 270 minutes for all anaerobic conditions,
+
                            since the increase of pressure within the flasks indicated a change of metabolism of EcN to
+
                            fermentation processes. Aerobic LB growth samples were taken at OD600=1.0.</figcaption>
+
 
                     </figure>
 
                     </figure>
                    <p>
 
                        Finally, we tested EcN interaction with other bacteria by adding bacterial supernatant to our
 
                        medium. The supernatant was sterilized and provided by Dr. Lisa Maier. We chose Bacteroides
 
                        thetaiotaomicron, Prevotella copri and Ruminococcus gnavus since they are commonly found within
 
                        the human microbiome [10]. Bifidobacterium adolescentis was chosen due to its probiotic nature
 
                        and Clostridium difficile supernatant was used, since it is often found in the microbiome of people
 
                        with chronic inflammation [10][11]. The results suggest that EcN grows under all additions,
 
                        however was initially inhibited in its growth by the addition of Bacteroides spp., thus we used
 
                        these samples for RNA-seq.
 
                    </p>
 
  
                    <figure>
+
        </div>
 +
        <div class="col-12 col-md-6 ">
 +
        <figure>
 
                         <a style="font-size: small"
 
                         <a style="font-size: small"
                           href="https://2019.igem.org/wiki/images/7/74/T--Tuebingen--bacterial-SN-white.png"
+
                           href="https://2019.igem.org/wiki/images/d/df/T--Tuebingen--Experimenta-Lab2.png"
 
                           data-effect="mfp-zoom-out"
 
                           data-effect="mfp-zoom-out"
 
                           title="Some title">
 
                           title="Some title">
                             <img src="https://2019.igem.org/wiki/images/7/74/T--Tuebingen--bacterial-SN-white.png"
+
                             <img src="https://2019.igem.org/wiki/images/d/df/T--Tuebingen--Experimenta-Lab2.png"
 
                                 class="figure-img img-fluid rounded"
 
                                 class="figure-img img-fluid rounded"
                                 alt="A generic square placeholder"></a>
+
                                 alt="Placeholder"></a>
                        <figcaption style="font-size: small; color: #F4F0DE">Fig. 7: EcN growth in mGAM medium under
+
                            anaerobic conditions at 37°C, pH 7 supplemented with either 50% supernatant of different
+
                            species or 50% of water as a control for depleted nutrients. All cultures were inoculated
+
                            with the same overnight culture of EcN. Bacteroides spp. with strongest change in growth
+
                            within the first 200 min of the experiment. Shown are mean values of four samples each.
+
                            Bacteroides samples were taken for RNA sequencing after 225 minutes.</figcaption>
+
 
                     </figure>
 
                     </figure>
 +
        </div>
 +
                    </div>
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
  
            <h2 style="font-family:'Righteous';">RNASeq</h2>
 
 
             <div class="row">
 
             <div class="row">
 
                 <div class="col-12">
 
                 <div class="col-12">
 +
                    <p>The students were also very interested in iGEM and our work. Hence, we not only introduced iGEM
 +
                        and our project to them, but also let them critically evaluate our project. They were also given
 +
                        the chance to conduct PCRs related to our project and could therefore gain insights into the upcoming
 +
                        challenges when starting a new project or experiment where not everything has been optimised for
 +
                        easy functionality. Many students were interested in the iGEM competition itself and in the process
 +
                        of finding a project and making it feasible. Therefore, we also invested into giving valuable input
 +
                        and advice on starting a project and encouraged the students to participate in iGEM or similar projects
 +
                        themselves. Several questions and concerns relating the functionality of our probiotic under different
 +
                        conditions, such as patients taking medications or antibiotics were also raised by the students. These
 +
                        fruitful discussions, as well as our exchange with several experts, contributed to the final design
 +
                        of our RNA-Seq experiment providing valuable input and different aspects to be considered
 +
                        [<a href="https://2019.igem.org/Team:Tuebingen/Experts" onclick='window.open("https://2019.igem.org/Team:Tuebingen/Experts","_self");'>Experts</a>, <a href="https://2019.igem.org/Team:Tuebingen/Nissle" onclick='window.open("https://2019.igem.org/Team:Tuebingen/Nissle","_self");'>Nissle</a>].</p>
 +
 
                     <p>
 
                     <p>
                         The transcriptome describes the set of whole RNA molecules in a population of cells and is subject
+
                         Due to the high interest of the students and the positive feedback from the Experimenta itself,
                        to continuous changes. Understanding the complete transcriptome, the expressed genes, post-transcriptional
+
                         we discussed the possibility of creating an iGEM high school team in Heilbronn in 2020.
                         modifications, single-nucleotide polymorphisms (SNPs) and additional properties of interest is
+
                        The Experimenta is highly interested in participating in iGEM 2020 with motivated students and
                         imperative towards understanding genetic cause, disease and possible treatment strategies.
+
                         will provide the required laboratories, supervision and funding. Our team will still be serving
The inherent complexity of the transcriptome requires precise and scaling analysis techniques. RNA sequencing (RNA-seq),
+
                        as advisors for the planned iGEM high school team next year. Furthermore, a new student lab course
                         also known as whole transcriptome shotgun sequencing (WTSS), is most commonly used for this purpose,
+
                         on CRISPR/Cas will be introduced at the Experimenta on the grounds of the theoretical background,
                         today. It uses next-generation sequencing (NGS) to detect and quantify RNA in biological samples.
+
                         input and inspiration iGEM Tuebingen conveyed.
The generated RNA-Seq read data is then analyzed according to a sample RNA-Seq work-flow as shown below.
+
 
                     </p>
 
                     </p>
                     <figure>
+
                </div>
 +
            </div>
 +
 
 +
            <h3 style="font-family:'Righteous'; color:#2ecc71;">Panel Discussion - „Biohacking – genetic experiments done at home“</h3>
 +
            <div class="row">
 +
                <div class="col-12">
 +
                     <p>In addition to the lab course, we also decided to host a panel discussion at the Experimenta.
 +
                        At the beginning of the <a href="https://2019.igem.org/wiki/images/2/24/T--Tuebingen--panelDiscussion.pdf" onclick='window.open("https://2019.igem.org/wiki/images/2/24/T--Tuebingen--panelDiscussion.pdf","_self");'>panel discussion</a>, we gave a talk about on the CRISPR / Cas method itself.
 +
                        We also included an overview of our ongoing project and the iGEM competition in general.</p>
 +
 
 +
                    <p>
 +
                        In collaboration with Dr. Robert Friedrich, we designed a discussion around the status of current
 +
                        research on CRISPR / Cas, the effectiveness of the method and its limitations, the prospects of
 +
                        future CRISPR / Cas developments, the availability and legality of so-called Do-It-Yourself CRISPR /
 +
                        Cas Kits and the ethical implications on society. The panel consisted out of Prof. Dr. Christoph
 +
                        Thyssen (<a href="www.bio.uni-kl.de/organisation/mitarbeiter/s-u/thyssen-christoph/" onclick='window.open("www.bio.uni-kl.de/organisation/mitarbeiter/s-u/thyssen-christoph/","_self");'>Christoph Thyssen</a>), an expert for subject
 +
                        didactics in biology and two of our team members - Marietheres Evers and Famke Baeuerle.
 +
                    </p>
 +
 
 +
                    <div class="row align-items-center">
 +
        <div class="col-12 col-md-6">
 +
        <figure>
 
                         <a style="font-size: small"
 
                         <a style="font-size: small"
                           href="https://2019.igem.org/wiki/images/7/7f/T--Tuebingen--RNA-Seq-transparent.png"
+
                           href="https://2019.igem.org/wiki/images/5/54/T--Tuebingen--Biohacking_05.jpg"
 
                           data-effect="mfp-zoom-out"
 
                           data-effect="mfp-zoom-out"
 
                           title="Some title">
 
                           title="Some title">
                             <img src="https://2019.igem.org/wiki/images/7/7f/T--Tuebingen--RNA-Seq-transparent.png"
+
                             <img src="https://2019.igem.org/wiki/images/5/54/T--Tuebingen--Biohacking_05.jpg"
 
                                 class="figure-img img-fluid rounded"
 
                                 class="figure-img img-fluid rounded"
                                 alt="A generic square placeholder image with rounded corners in a figure."></a>
+
                                 alt="Placeholder"></a>
 
                     </figure>
 
                     </figure>
                    <p>
 
                        We set ourselves the goal of understanding the transcriptomic changes that E.coli Nissle undergoes
 
                        under various stress conditions to gain a deeper insight into its responses. Understanding the
 
                        stress responses of E.coli Nissle could lead to the development of more stress robust strains,
 
                        which not only our project would benefit from, but also scientists working on probiotic drugs in general.
 
                    </p>
 
                    <p>
 
                        We divided our experimental design into two parts. We not only wanted to investigate the effect
 
                        of environmental stress on E.coli Nissle under aerobic conditions, but were also specifically
 
                        interested in anaerobic conditions. Hence, our experimental design looks as follows:
 
                    </p>
 
                    <p>
 
                        The respective temperature, pH values and doses were determined by growth curves, shown above.
 
                        To get the most out of RNA-Seq applied to stress factors, it is important to find the cutoff
 
                        values, where E.coli Nissle is put under stress the most, but still survives.
 
                    </p>
 
                    <p>
 
                        Sequencing and library preparation was conducted on two sites. All aerobic samples were prepared
 
                        and sequenced at the NGS Competence Center Tübingen (NCCT), whereas all anaerobic samples were
 
                        prepared and sequenced at the European Molecular Biology Laboratory (EMBL) in Heidelberg.
 
                        For more details please visit our <a href="https://2019.igem.org/Team:Tuebingen/Notebook" onclick='window.open("https://2019.igem.org/Team:Tuebingen/Notebook","_self");'>Notebook</a>
 
                        and <a href="https://2019.igem.org/Team:Tuebingen/Attributions" onclick='window.open("https://2019.igem.org/Team:Tuebingen/Attributions","_self");'>Attributions</a>.
 
                    </p>
 
  
 +
        </div>
 +
        <div class="col-12 col-md-6 ">
 +
        <figure>
 +
                        <a style="font-size: small"
 +
                          href="https://2019.igem.org/wiki/images/4/4d/T--Tuebingen--Biohacking_10.jpg"
 +
                          data-effect="mfp-zoom-out"
 +
                          title="Some title">
 +
                            <img src="https://2019.igem.org/wiki/images/4/4d/T--Tuebingen--Biohacking_10.jpg"
 +
                                class="figure-img img-fluid rounded"
 +
                                alt="Placeholder"></a>
 +
                    </figure>
 +
        </div>
 
                     </div>
 
                     </div>
                </div>
+
                    <p>
 
+
                        A lot of questions were asked during the <a href="https://2019.igem.org/wiki/images/1/13/T--Tuebingen--Panel_discussion_allg.pdf" onclick='window.open("https://2019.igem.org/wiki/images/1/13/T--Tuebingen--Panel_discussion_allg.pdf","_self");'>panel discussion</a> and the presentation. We discussed
 
+
                         the ethical implications of the CRISPR / Cas Method with the audience. Surprisingly,
            <h2 style="font-family:'Righteous';">Data Analysis</h2>
+
                        many participants were eager to talk about scenarios they have heard about.
            <div class="row">
+
                    </p>
                <div class="col-12">
+
                    <p>Quality Control Differential Expression Analysis
+
                         Pathway Analysis</p>
+
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
  
             <h2 style="font-family:'Righteous'; color:#2ecc71;">Metabolic Model</h2>
+
             <h3 style="font-family:'Righteous'; color:#2ecc71;">Outlook - Advisors of the Experimenta iGEM team 2020 & New student lab course</h3>
 
+
 
+
 
             <div class="row">
 
             <div class="row">
 
                 <div class="col-12">
 
                 <div class="col-12">
                     <p>Insert here</p>
+
                     <p>During the collaboration with the Experimenta Heilbronn, we sat together with Dr. Robert Friedrich
                </div>
+
                        and Norbert Hommrichhausen to discuss the foundation of an iGEM high school team at the Experimenta
            </div>
+
                        Heilbronn. The Experimenta is highly interested in starting a team in Heilbronn and the motivated
 +
                        and interested students encouraged us to team up and further pursue this plan. Plans for an iGEM
 +
                        high school team 2020 were made, in which the Experimenta Heilbronn will be the main partner
 +
                        providing lab space, supervision and funding. The role of the iGEM Team Tuebingen is that of
 +
                        experienced advisors, who can assist in questions concerning the iGEM competition itself, the
 +
                        workflow of an iGEM year, as well as deliver expert knowledge and guidance in the laboratory or
 +
                        in questions concerning bioinformatics, design and human practices. Both the Experimenta and the
 +
                        iGEM Team Tuebingen aim at establishing a long-term collaboration in the scope of iGEM.</p>
  
        </div>
+
                     <p>
 
+
                         Next to the foundation of a high school iGEM team, the Experimenta will also introduce new lab
          <div id="glpreferences" class="row">
+
                         courses for school classes, one of them being a CRISPR/Cas course. The theoretical background,
                <h3 style="font-family:'Righteous'; color: #2ecc71;">References</h3>
+
                         first steps and foundation of this course arose from the collaboration with iGEM Tuebingen this year.
                <div class="col-12" style="font-size: x-small; overflow-wrap: break-word;">
+
                         A more detailed outline and implementation of the course will be part of another collaboration
                     <ol>
+
                         between the Experimenta and iGEM Tuebingen.
                         <li style="color: #F4F0DE"><a href=https://doi.org/10.1093/femsle/fnw212> Ulrich Sonnenborn, Escherichia coli strain Nissle 1917—from bench to bedside and back: history of a special Escherichia coli strain with probiotic properties, FEMS Microbiology Letters, Volume 363, Issue 19, October 2016, fnw212,</a></li>
+
                     </p>
                         <li id="ref_2" style="color: #F4F0DE">Sana Ben Othman and Tomio Yabe. Use of Hydrogen Peroxide and Peroxl Radicals to induce Oxidative Stress in Neuronal Cells. Reviews in Agricultural Science, 3:40-45, 2015. Doi: 10.7831/ras.3.40</li>
+
                        <li id="ref_3" style="color: #F4F0DE;">P. Capela, T.K.C. Hay, N.P. Shah. Effect of cryoprotectants, prebiotics and microencapsulation on survival of probiotic organisms in yoghurt and freeze-dried yoghurt. Food Research International. Volume 39, Issue 2, 2006, Pages 203-211, ISSN 0963-9969, https://doi.org/10.1016/j.foodres.2005.07.007.</li>
+
                        <li id="ref_4" style="color: #F4F0DE;">Govender M, Choonara YE, Kumar P, du Toit LC, van Vuuren S, Pillay V. A review of the advancements in probiotic delivery: Conventional vs. non-conventional formulations for intestinal flora supplementation. AAPS PharmSciTech. 2014;15(1):29–43. doi:10.1208/s12249-013-0027-1</li>
+
                         <li id="ref_5" style="color: #F4F0DE;"><a href="https://opsdiagnostics.com/applications/lyophilization/ecoli_lyophilization_stability.html">https://opsdiagnostics.com/applications/lyophilization/ecoli_lyophilization_stability.html</a> </li>
+
                        <li id="ref_6" style="color: #F4F0DE;"><a href="https://doi.org/10.1007/s00125-008-1053-5"></a>Bailey, C. J, Wilcock, C, Scarpello, J. H. B. Metformin and the intestine. Diabetologia. 2008.  Volume 51, Issue 8, Pages 1552, ISSN 1432-0428, Doi: 10.1007/s00125-008-1053-5,</li>
+
                        <li id="ref_7" style="color: #F4F0DE;">High Accumulation of Metformin in Colonic Tissue of Subjects With Diabetes or the Metabolic Syndrome. Paleari, LauraBurhenne, JürgenFoersch, SebastianParodi, AndreaGnant, MichaelScherer, DominiqueUlrich, Cornelia M.Stabuc, BorutPuntoni, MatteoCoccia, GianniPetrera, MarilenaHaefeli, Walter-EmilDeCensi, Andrea et al. Gastroenterology, Volume 154, Issue 5, 1543 - 1545</li>
+
                         <li id="ref_8" style="color: #F4F0DE;">Martinez-Augustin O, Sanchez de Medina F. Intestinal bile acid physiology and pathophysiology. World J Gastroenterol. 2008;14(37):5630–5640. doi:10.3748/wjg.14.5630</li>
+
                        <li id="ref_9" style="color: #F4F0DE;">Postprandial concentrations of free and conjugated bile acids down the length of the normal human small intestine. T. C. NORTHFIELD AND I. McCOLL. Gut, 1973, 14, 513-518</li>
+
                         <li id="ref_10" style="color: #F4F0DE;">Belizário JE, Napolitano M. Human microbiomes and their roles in dysbiosis, common diseases, and novel therapeutic approaches. Front Microbiol. 2015;6:1050. Published 2015 Oct 6. doi:10.3389/fmicb.2015.01050</li>
+
                        <li id="ref_11" style="color: #F4F0DE;">Lloyd-Price J, Abu-Ali G, Huttenhower C. The healthy human microbiome. Genome Med. 2016;8(1):51. Published 2016 Apr 27. doi:10.1186/s13073-016-0307-y</li>
+
                     </ol>
+
 
                 </div>
 
                 </div>
 
             </div>
 
             </div>
 +
        </div>
 
     </main>
 
     </main>
 +
</div>
 
</div>
 
</div>
  

Latest revision as of 21:49, 19 October 2019

GLP.exe

Experimenta

The Experimenta Science Center Heilbronn

The Experimenta Science Center (Experimenta) in Heilbronn, Baden-Wuerttemberg, Germany offers science at your fingertips on an area of around 25,000 square metres with around 275 interactive exhibits, four creative studios and nine laboratories, as well as an observatory and an extraordinary science dome with spectacular science shows. Additionally, last year, they set up the “Schülerforschungszentrum” (SFZ), where young researchers are actively supported in their initial scientific work. It is directed at students from high schools in Heilbronn. Their general idea is to encourage students to develop their own projects while funding, lab space and supervision is granted.

Our 4 Day Lab Course

The course was held in a collaborative manner over a span of four days. Dr. Robert Friedrich, a biologist working for the SFZ, gave the general lab introduction and provided the overall lab responsibility, while we were mainly responsible to teach the required theoretical background, introduce bioinformatics data analysis (DNA-Seq) and finally project development. Additionally, we were supporting Dr. Friedrich during the experiments and closely supervised the students.

We conveyed the required theoretical background in a modern and interactive way, with the use of smart boards and current web tools. We focused on teaching the highly motivated students cutting-edge research, while providing a theoretical foundation, preparing them for different biology competitions and eventually university.

Please check out the material we prepared for the course - a script covering all the theoretical background and a presentation:

Please see the schedule below.

Due to the interactive design of the course, we also discussed the experiments with the students and tried to summarize what we did on the blackboard:

The students were also very interested in iGEM and our work. Hence, we not only introduced iGEM and our project to them, but also let them critically evaluate our project. They were also given the chance to conduct PCRs related to our project and could therefore gain insights into the upcoming challenges when starting a new project or experiment where not everything has been optimised for easy functionality. Many students were interested in the iGEM competition itself and in the process of finding a project and making it feasible. Therefore, we also invested into giving valuable input and advice on starting a project and encouraged the students to participate in iGEM or similar projects themselves. Several questions and concerns relating the functionality of our probiotic under different conditions, such as patients taking medications or antibiotics were also raised by the students. These fruitful discussions, as well as our exchange with several experts, contributed to the final design of our RNA-Seq experiment providing valuable input and different aspects to be considered [Experts, Nissle].

Due to the high interest of the students and the positive feedback from the Experimenta itself, we discussed the possibility of creating an iGEM high school team in Heilbronn in 2020. The Experimenta is highly interested in participating in iGEM 2020 with motivated students and will provide the required laboratories, supervision and funding. Our team will still be serving as advisors for the planned iGEM high school team next year. Furthermore, a new student lab course on CRISPR/Cas will be introduced at the Experimenta on the grounds of the theoretical background, input and inspiration iGEM Tuebingen conveyed.

Panel Discussion - „Biohacking – genetic experiments done at home“

In addition to the lab course, we also decided to host a panel discussion at the Experimenta. At the beginning of the panel discussion, we gave a talk about on the CRISPR / Cas method itself. We also included an overview of our ongoing project and the iGEM competition in general.

In collaboration with Dr. Robert Friedrich, we designed a discussion around the status of current research on CRISPR / Cas, the effectiveness of the method and its limitations, the prospects of future CRISPR / Cas developments, the availability and legality of so-called Do-It-Yourself CRISPR / Cas Kits and the ethical implications on society. The panel consisted out of Prof. Dr. Christoph Thyssen (Christoph Thyssen), an expert for subject didactics in biology and two of our team members - Marietheres Evers and Famke Baeuerle.

A lot of questions were asked during the panel discussion and the presentation. We discussed the ethical implications of the CRISPR / Cas Method with the audience. Surprisingly, many participants were eager to talk about scenarios they have heard about.

Outlook - Advisors of the Experimenta iGEM team 2020 & New student lab course

During the collaboration with the Experimenta Heilbronn, we sat together with Dr. Robert Friedrich and Norbert Hommrichhausen to discuss the foundation of an iGEM high school team at the Experimenta Heilbronn. The Experimenta is highly interested in starting a team in Heilbronn and the motivated and interested students encouraged us to team up and further pursue this plan. Plans for an iGEM high school team 2020 were made, in which the Experimenta Heilbronn will be the main partner providing lab space, supervision and funding. The role of the iGEM Team Tuebingen is that of experienced advisors, who can assist in questions concerning the iGEM competition itself, the workflow of an iGEM year, as well as deliver expert knowledge and guidance in the laboratory or in questions concerning bioinformatics, design and human practices. Both the Experimenta and the iGEM Team Tuebingen aim at establishing a long-term collaboration in the scope of iGEM.

Next to the foundation of a high school iGEM team, the Experimenta will also introduce new lab courses for school classes, one of them being a CRISPR/Cas course. The theoretical background, first steps and foundation of this course arose from the collaboration with iGEM Tuebingen this year. A more detailed outline and implementation of the course will be part of another collaboration between the Experimenta and iGEM Tuebingen.