Difference between revisions of "Team:Sorbonne U Paris/Notebook"

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<h3>Transformation of <I>Chlamydomonas reinhardtii</I></h3>
+
<h5>Transformation of <I>Chlamydomonas reinhardtii</I></h5>
  
 
<p>- Aliquote 50 mL of culture in 50 mL falcon tubes 7 times (1 tube = 2 transformations).<br>
 
<p>- Aliquote 50 mL of culture in 50 mL falcon tubes 7 times (1 tube = 2 transformations).<br>
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<br>
 
<br>
  
<h3>Results of the transformation with pCMM-15</h3>
+
<h5>Results of the transformation with pCMM-15</h5>
  
 
<p>For plate pAGM8055, transformation control plate had the same results but with less overall colonies.
 
<p>For plate pAGM8055, transformation control plate had the same results but with less overall colonies.
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<br>
 
<br>
  
<h3>Transplanting pCMM-15 colonies into liquid medium</h3>
+
<h5>Transplanting pCMM-15 colonies into liquid medium</h5>
  
 
<p>- Pick 4 white colonies of the pCMM-15 transformation plate and incubated them in LB/Spectinomycin (50 µg/mL) liquid medium at 30°C overnight.</p>
 
<p>- Pick 4 white colonies of the pCMM-15 transformation plate and incubated them in LB/Spectinomycin (50 µg/mL) liquid medium at 30°C overnight.</p>
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<div class="modal-body" style="width: 100%; height: 500px;overflow: auto;">
  
<h3>Miniprep of the 4 pCMM-15 clones from 01.08.19</h3>
+
<h5>Miniprep of the 4 pCMM-15 clones from 01.08.19</h5>
  
 
<p>- Extract plasmid DNA pCMM-15 of 4 clones using Ozyme <a class="link-inside-page" href="https://files.zymoresearch.com/protocols/_d4208t_d4209_d4210_d4211_d4212_zymopure_plasmid_miniprep.pdf">ZymoPURE™ Plasmid Miniprep Kit.</a></p>
 
<p>- Extract plasmid DNA pCMM-15 of 4 clones using Ozyme <a class="link-inside-page" href="https://files.zymoresearch.com/protocols/_d4208t_d4209_d4210_d4211_d4212_zymopure_plasmid_miniprep.pdf">ZymoPURE™ Plasmid Miniprep Kit.</a></p>
 
<br>
 
<br>
  
<h3>Determination of plasmid concentration with nanodrop</h3>
+
<h5>Determination of plasmid concentration with nanodrop</h5>
  
 
<p>The concentration of the extracted DNA is measured with the NanoDrop 2000 spectrophotometer (ThermoFisher Scientific) :</p>
 
<p>The concentration of the extracted DNA is measured with the NanoDrop 2000 spectrophotometer (ThermoFisher Scientific) :</p>
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<br>
 
<br>
  
<h3>Quality Control digestion of pCMM-15 </h3>
+
<h5>Quality Control digestion of pCMM-15 </h5>
  
 
<p>- Prepare a master mix for 5 reaction :</p>
 
<p>- Prepare a master mix for 5 reaction :</p>
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- Incubate at 37°C during 110 min.</p>
 
- Incubate at 37°C during 110 min.</p>
  
<h2>DNA gel electrophoresis</h2>
+
<h4>DNA gel electrophoresis</h4>
  
 
<p>Prepare the agarose gel 1% in TAE buffer :<br>
 
<p>Prepare the agarose gel 1% in TAE buffer :<br>
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- Run the gel for 40 min at 100V.</p>
 
- Run the gel for 40 min at 100V.</p>
  
<h2>Results</h2>
+
<h4>Results</h4>
  
 
<center><img src="https://2019.igem.org/wiki/images/3/34/T--Sorbonne_U_Paris--gel10NB.png" style="width:100%; cursor:zoom-in" data-toggle="modal" data-target=".gel10NB"></center>
 
<center><img src="https://2019.igem.org/wiki/images/3/34/T--Sorbonne_U_Paris--gel10NB.png" style="width:100%; cursor:zoom-in" data-toggle="modal" data-target=".gel10NB"></center>
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<div class="modal-body" style="width: 100%; height: 500px;overflow: auto;">
 
<div class="modal-body" style="width: 100%; height: 500px;overflow: auto;">
  
<h3>Determination of plasmid concentration with nanodrop</h3>
+
<h5>Determination of plasmid concentration with nanodrop</h5>
  
 
<p>The concentration of the extracted DNA is measured with the NanoDrop 2000 spectrophotometer(ThermoFisher Scientific) :</p>
 
<p>The concentration of the extracted DNA is measured with the NanoDrop 2000 spectrophotometer(ThermoFisher Scientific) :</p>
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<br>
 
<br>
  
<h3>Digestion of pCMM-15 to obtain the linear insert for <I>Chlamydomonas</I> transformation (1st part)</h3>
+
<h5>Digestion of pCMM-15 to obtain the linear insert for <I>Chlamydomonas</I> transformation (1st part)</h5>
  
 
<p>- Prepare a master mix for 2 reaction :</p>
 
<p>- Prepare a master mix for 2 reaction :</p>
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<br>
 
<br>
  
<h3><i>Chlamydomonas</I> culture dilution</h3>
+
<h5><i>Chlamydomonas</I> culture dilution</h5>
  
 
<p>The initial cell culture of Chlamydomonas (UVM7) is saturated with a concentration of 15.10^6 cells/mL : <br>
 
<p>The initial cell culture of Chlamydomonas (UVM7) is saturated with a concentration of 15.10^6 cells/mL : <br>
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<div class="modal-body" style="width: 100%; height: 500px;overflow: auto;">
  
<h3>Quality Control digestion of pCMM-15 (2nd part)</h3>
+
<h5>Quality Control digestion of pCMM-15 (2nd part)</h5>
  
<h2>DNA gel electrophoresis </h2>
+
<h4>DNA gel electrophoresis </h4>
  
 
<p>Prepare the agarose gel 0,8% in TAE buffer :<br>
 
<p>Prepare the agarose gel 0,8% in TAE buffer :<br>
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- Run the gel for 25 min at 100V.</p>
 
- Run the gel for 25 min at 100V.</p>
  
<h2> Results </h2>
+
<h4> Results </h4>
  
 
<p>We expect three fragments generated against one in the empty vector (see predicted gel from 29/07).<br>
 
<p>We expect three fragments generated against one in the empty vector (see predicted gel from 29/07).<br>
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<br>
 
<br>
  
<h3>Extraction of the insert of pCMM-15</h3>
+
<h5>Extraction of the insert of pCMM-15</h5>
  
 
<p>- To isolate the insert, cut the agarose gel under blue light in.
 
<p>- To isolate the insert, cut the agarose gel under blue light in.
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<br>
 
<br>
  
<h3>Determination of insert concentration with nanodrop</h3>
+
<h5>Determination of insert concentration with nanodrop</h5>
  
 
<p>The concentration of the extracted DNA is measured with the NanoDrop 2000 spectrophotometer(ThermoFisher Scientific) :</p>
 
<p>The concentration of the extracted DNA is measured with the NanoDrop 2000 spectrophotometer(ThermoFisher Scientific) :</p>
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<br>
 
<br>
  
<h3>Transformation of <I>Chlamydomonas reinhardtii</I></h3>
+
<h5>Transformation of <I>Chlamydomonas reinhardtii</I></h5>
  
 
<p>- Verify into the countness of chlamy swing, and the concentration culture (it must be 1-5.106 cells/mL).<br>
 
<p>- Verify into the countness of chlamy swing, and the concentration culture (it must be 1-5.106 cells/mL).<br>
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<h3>Transplantation of <I>Chlamydomonas</I> colonies onto solid medium</h3>
+
<h5>Transplantation of <I>Chlamydomonas</I> colonies onto solid medium</h5>
  
 
<p>- Centrifuge 3 min at 2000 g.<br>
 
<p>- Centrifuge 3 min at 2000 g.<br>

Revision as of 09:31, 5 October 2019

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