| Line 123: | Line 123: | ||
<td>Signalling</td> | <td>Signalling</td> | ||
<td>FPR2 receptor</td> | <td>FPR2 receptor</td> | ||
| − | <td>1059 bp<td> | + | <td>1059 bp</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 129: | Line 129: | ||
<td>DNA</td> | <td>DNA</td> | ||
<td>MJ tyrosyl synthetase</td> | <td>MJ tyrosyl synthetase</td> | ||
| − | <td>921 bp<td> | + | <td>921 bp</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 135: | Line 135: | ||
<td>Protein</td> | <td>Protein</td> | ||
<td>MCP</td> | <td>MCP</td> | ||
| − | <td>363 bp<td> | + | <td>363 bp</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 141: | Line 141: | ||
<td>RNA</td> | <td>RNA</td> | ||
<td>MS2 loops</td> | <td>MS2 loops</td> | ||
| − | <td>129 bp<td> | + | <td>129 bp</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 147: | Line 147: | ||
<td>Protein</td> | <td>Protein</td> | ||
<td>SPD5</td> | <td>SPD5</td> | ||
| − | <td>3594 bp<td> | + | <td>3594 bp</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 153: | Line 153: | ||
<td>Other</td> | <td>Other</td> | ||
<td>Aspartate Racemase (PhAspR)</td> | <td>Aspartate Racemase (PhAspR)</td> | ||
| − | <td>687 bp<td> | + | <td>687 bp</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 159: | Line 159: | ||
<td>Other</td> | <td>Other</td> | ||
<td>DAAO</td> | <td>DAAO</td> | ||
| − | <td>Length<td> | + | <td>Length</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
Revision as of 12:37, 13 December 2019
Here you can find our basic parts.
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Name
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Type
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Description
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Length
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|---|---|---|---|
| BBa_K3009001 | Signalling | FPR2 receptor | 1059 bp |
| BBa_K3009030 | DNA | MJ tyrosyl synthetase | 921 bp |
| BBa_K3009031 | Protein | MCP | 363 bp |
| BBa_K3009032 | RNA | MS2 loops | 129 bp |
| BBa_K3009033 | Protein | SPD5 | 3594 bp |
| BBa_K3009012 | Other | Aspartate Racemase (PhAspR) | 687 bp |
| BBa_K3009013 | Other | DAAO | Length |
This is our favorite basic part:
Spindle-deficient protein 5 derived from C.elegans is able to assemble into condensates that built a separate phase from the surronding cytosol, therefore emulating a reaction compartment. Fusion proteins will also be confined to this organelle.
SPD 5 proteins assemble into phase-separated condensates in the cytosol, building a dynamic artificial organelle. Fusion proteins of SPD5 will be confined inside the organelle and separated from the all other components inside the cell. Due to the lack of a membrane, all other molecules can freely move in and out of the organelle.
In C. elegans, SPD5 , forms condensates that aid the organization of microtubule arrays in the centrosome.
By expressing a SPD5:sfGFP fusion in E.coli, we have proven droplet formation in the E.coli cytosol.
Fig. 1: E.coli cells expressing a SPD5:sfGFP fusion verify droplet formation
To confirm that the constructs were were seeing were in fact dynamic droplets and not dead aggregates, we bleached several regions of interest with a 475 nm laser beam. Due to the dynamic nature of the droplets, flurescent should be recovered by diffusion of unbleached proteins
Fig.2 Recovery of fluorescence after photobleaching in SPD5:sfGFP expressing C321.deltaA cells.