Difference between revisions of "Team:SEU/Demonstrate"

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                                           <p style="font-size=36px">1.The simulation results of each calculation operation. </p>
 
                                           <p style="font-size=36px">1.The simulation results of each calculation operation. </p>
 
                                           <h4>Addition:</h4>
 
                                           <h4>Addition:</h4>
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                                           <p>The figure below shows the numerical simulation result of the set of reactions:\(A_1 \xrightarrow{k} O,\quad A_2 \xrightarrow{k_2} O, \quad A_2 \xrightarrow{k_3} O\). The initial concentrations (input values) are 1,2 and 3, respectively (dashed lines in the figure). The output result is the sum of such values (solid red line in the figure).</p>
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                                           <p>The figure below shows the numerical simulation result of a set of reactions:\(A_1 \xrightarrow{k} O,\quad A_2 \xrightarrow{k_2} O, \quad A_2 \xrightarrow{k_3} O\) which perform addition calculation. The initial concentrations (input values) are 1, 2 and 3, respectively (dashed lines in the figure). The output result is the sum of such values (solid red line in the figure).</p>
 
                                           <center>
 
                                           <center>
 
                                           <img src="https://static.igem.org/mediawiki/2019/8/84/T--SEU--additionSim.png"  width="310" height="138" > </center>
 
                                           <img src="https://static.igem.org/mediawiki/2019/8/84/T--SEU--additionSim.png"  width="310" height="138" > </center>
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                                           <h4>Subtraction</h4>
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                                           <h4>Subtraction:</h4>
 +
                                          <p>The figure below shows the reaction \(A+B \xrightarrow{k} \phi\) which is a subtractor. There are two tests shown in this figure: \([A_1](0)=3, [B_1](0)=2\) and \([A_2](0)=2, [B_2](0)=4\). </p>
 
                                           <center>
 
                                           <center>
 
                                           <img src="https://static.igem.org/mediawiki/2019/9/93/T--SEU--subtractionSim.png"  width="310" height="141" ></center>
 
                                           <img src="https://static.igem.org/mediawiki/2019/9/93/T--SEU--subtractionSim.png"  width="310" height="141" ></center>

Revision as of 06:18, 3 October 2019





Demonstrate

In this page, we provide simulation results along with experiment results. Simulations are based on a Mathematica numerical simulation package CRNsimulator [1]. Unitless concentrations and rate constants are utilized to simplify the model.

1.The simulation results of each calculation operation.

Addition:

The figure below shows the numerical simulation result of a set of reactions:\(A_1 \xrightarrow{k} O,\quad A_2 \xrightarrow{k_2} O, \quad A_2 \xrightarrow{k_3} O\) which perform addition calculation. The initial concentrations (input values) are 1, 2 and 3, respectively (dashed lines in the figure). The output result is the sum of such values (solid red line in the figure).

Subtraction:

The figure below shows the reaction \(A+B \xrightarrow{k} \phi\) which is a subtractor. There are two tests shown in this figure: \([A_1](0)=3, [B_1](0)=2\) and \([A_2](0)=2, [B_2](0)=4\).

Multiplication

2.We use such a model to construct a chemical neuron. A pattern recognition example is shown here.

3.The DNA experment results of our calculation operations.

References

[1] CRNsimulator.