Difference between revisions of "Team:Georgia State/Description"

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    <title>GSU iGEM</title>
  
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<h3>★  ALERT! </h3>
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<p>This page is used by the judges to evaluate your team for the <a href="https://2019.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2019.igem.org/Judging/Awards"> award listed below</a>. </p>
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<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2019.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
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<h1>Project Inspiration and Description </h1>
 
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<h3>NEW: Bronze Medal Criterion #4</h3>
 
  
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<p>Document how and why you chose your iGEM project on this page. Reference work outside or inside of iGEM that inspired your project, how you selected your project goal, and why you thought this project was a useful application of synthetic biology. Finally, provide a clear and concise description of what you plan on doing for your project.</p>
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<p>To be eligible for this award, you must add clear documentation to this page and delete the alert box at the top of this page.</p>
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                                    <li><a href="https://2019.igem.org/wiki/index.php?title=Team:Georgia_State">Home</a></li>
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                                            <li class="active"><a href="../Team:Georgia_State/Description">- Description</a></li>
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                                            <li><a href="../Team:Georgia_State/Culturing">- Culturing</a></li>
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                                            <li><a href="../Team:Georgia_State/Results">- Results</a></li>
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                                            <li><a href="../Team:Georgia_State/AlgaeObservations">- Algae Observations</a></li>
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                                            <li><a href="../Team:Georgia_State/Hardware">- Hardware</a></li>
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                                            <li><a href="../Team:Georgia_State/Model">- Model</a></li>
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                                            <li><a href="../Team:Georgia_State/Composite_Part">- Composite Parts</a></li>
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                                    <li><a href="../Team:Georgia_State/Human_Practices">Human Practices</a>
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                                    <li><a href="https://igem.org/2019_Judging_Form?team=Georgia_State">Judging Form</a></li>
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<h3>What should this page contain?</h3>
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<li> A clear and concise description of your project.</li>
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<li>A detailed explanation of why your team chose to work on this particular project.</li>
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<li>References and sources to document your research.</li>
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<li>Use illustrations and other visual resources to explain your project.</li>
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                        <h2>Creating Synbio-dinium</h2>
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                        <!--<h2>Our Inspiration</h2>-->
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                        <span>Chasing Coral</span>
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<h3>Inspiration</h3>
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<p>See how other teams have described and presented their projects: </p>
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                <div class="service-text"> <h2>Our Inspiration</h2>The inspiration behind our project was the Netflix documentary <i>Chasing Coral</i>. From this documentary
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we learned about the extent of the devastation to coral reefs caused by bleaching. Many of the
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scientists seen in the film expressed despair over the seeming inevitability of the destruction. While
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current efforts to protect reefs have focused on enacting marine protected areas to prevent commercial
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fishing and industrial activities from harming the reefs, these efforts cannot stop the environmental
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effects of climate change on ocean waters. In the absence of a realistic proposal to halt global warming
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by eliminating fossil fuel consumption, marine heatwaves will become more frequent and even more
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severe ( Nature Communications <strong>volume 9</strong>, Article number: 1324 (2018),
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<a href="https://www.nature.com/articles/s41467-018-03732-9">https://www.nature.com/articles/s41467-018-03732-9</a>) leading to a corresponding increase in coral
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bleaching and reef loss. About half of the Great Barrier Reef died after the heat wave of 2016/2017.<a href="https://www.newscientist.com/article/2198318-the-great-barrier-reef-is-losing-its-ability-to-recover-
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from-bleaching/">https://www.newscientist.com/article/2198318-the-great-barrier-reef-is-losing-its-ability-to-recover-
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from-bleaching/</a>.And according to the UN Special Report on Global Warming, all global reefs around
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the world are expected to completely die off if global temperatures increase by another 2 degrees
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Celsius (<a href="https://www.ipcc.ch/2018/10/08/summary-for-policymakers-of-ipcc-special-report-on-global-
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warming-of-1-5c-approved-by-governments/">https://www.ipcc.ch/2018/10/08/summary-for-policymakers-of-ipcc-special-report-on-global-
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warming-of-1-5c-approved-by-governments/).</a></div>
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<li><a href="https://2016.igem.org/Team:Imperial_College/Description">2016 Imperial College</a></li>
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<li><a href="https://2016.igem.org/Team:Wageningen_UR/Description">2016 Wageningen UR</a></li>
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  <img src="https://static.igem.org/mediawiki/2019/d/d1/T--Georgia_State--Coral5_color.png">
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<li><a href="https://2014.igem.org/Team:UC_Davis/Project_Overview"> 2014 UC Davis</a></li>
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<li><a href="https://2014.igem.org/Team:SYSU-Software/Overview">2014 SYSU Software</a></li>
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                    <h2>The Problem</h2>
  
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                    Coral bleaching, the loss of algal symbionts necessary for the survival of cnidarian reef organisms, is a disastrous environmental issue with global consequences. No single factor has been established as the cause of this catastrophe, but there are a multitude of suspects including increased greenhouse gas emissions and rising seawater temperatures<sup>[1]</sup>.
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<h3>Advice on writing your Project Description</h3>
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We encourage you to put up a lot of information and content on your wiki, but we also encourage you to include summaries as much as possible. If you think of the sections in your project description as the sections in a publication, you should try to be concise, accurate, and unambiguous in your achievements.
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                        <img src="https://static.igem.org/mediawiki/2019/6/6a/T--Georgia_State--the_problem_animation_thumb.png" alt="">
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                        <a href="https://www.youtube.com/watch?v=u7emUF2JQx8" class="video-play-btn wow bounceInDown" data-wow-delay="200ms" style="visibility: visible; animation-delay: 200ms; animation-name: bounceInDown;"><i class="fa fa-play"></i></a>
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<h3>References</h3>
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<p>iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you thought about your project and what works inspired you.</p>
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                    <h2>The Solution</h2>
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                    Although there is no absolute certainty about the cause of coral bleaching, increasing water
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temperatures have been directly correlated with subsequent bleaching events. And coral bleaching can
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be stimulated in aquarium corals by raising the water temperatures. There are some strains of corals
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and their symbiotic algae that prove somewhat more resistant to bleaching than others. So we
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proposed to identify those characteristics that might improve the ability to withstand bleaching and use
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a synthetic biology approach to modify the algae and restore them to corals.
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<div class="row-align-center"><div class="col-6"><img src="../wiki/images/c/c4/T--Georgia_State--symbio5.png"></div></div>
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                    <h2>The Plan</h2>
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We are establishing both culturing and transformation protocols for these microalgae symbionts. We began by optimizing culturing techniques for Symbiodinium microadriaticum, Oxyrrhis marina (our model organism), and Dunaliella tertiolecta (the food source for O. marina).
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To identify optimal algal growth conditions, we tested various factors such as growth media, light intensity, and temperature. We designed a codon optimized red fluorescent protein part that was cloned into a dinoflagellate-optimized expression plasmid (DinoIII)<sup>[2]</sup> for transformation into our model organism as a proof of concept. In parallel, we are also attempting to replicate the only known successful transformation of Symbiodinium using an Agrobacterium tumefacien co-culture carrying a binary vector, pCB302-GFP-MBD<sup>[3]</sup>, and designing/executing various electroporation protocols. A genomic analysis of clade D Symbiodinium, a clade associated with higher resistance to bleaching but diminished coral growth, will identify target genes related to bleaching resistance for transformation into the growth-favorable clade C of Symbiodinium. The corals will then uptake the modified host algae, increasing their resistance to bleaching.
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<img src="https://static.igem.org/mediawiki/2019/2/20/T--Georgia_State--symbio4.png">
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<li><cite>[1]  Douglas (2003, April 4). Coral Bleaching--How and Why doi:10.1016/S0025-326X(03)00037-7/journal. </cite></li>
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<li><cite>[2]  Sprecher,B., Zhang,H. & Lin, S. (2019, April 9). Nuclear gene transformation in a dinoflagellate. doi: 10.1101/602821</cite></li>
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 +
<li><cite>[3]  Ortiz-Matamoros, M.F., Islas-Flores, T., Voigt, B., Menzel, D., Baluška, F. & Villanueva, M.A. (2015, July 13). Heterologous DNA Uptake in Cultured
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Symbiodinium spp. Aided by Agrobacterium tumefaciens. doi:10.1371/journal. Pone.0132693
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</cite></li>
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                        <a href="./Design" class="btn akame-btn">Read More About Our Design</a>
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Latest revision as of 00:23, 22 October 2019

GSU iGEM

Creating Synbio-dinium

Chasing Coral


Our Inspiration

The inspiration behind our project was the Netflix documentary Chasing Coral. From this documentary we learned about the extent of the devastation to coral reefs caused by bleaching. Many of the scientists seen in the film expressed despair over the seeming inevitability of the destruction. While current efforts to protect reefs have focused on enacting marine protected areas to prevent commercial fishing and industrial activities from harming the reefs, these efforts cannot stop the environmental effects of climate change on ocean waters. In the absence of a realistic proposal to halt global warming by eliminating fossil fuel consumption, marine heatwaves will become more frequent and even more severe ( Nature Communications volume 9, Article number: 1324 (2018), https://www.nature.com/articles/s41467-018-03732-9) leading to a corresponding increase in coral bleaching and reef loss. About half of the Great Barrier Reef died after the heat wave of 2016/2017.https://www.newscientist.com/article/2198318-the-great-barrier-reef-is-losing-its-ability-to-recover- from-bleaching/.And according to the UN Special Report on Global Warming, all global reefs around the world are expected to completely die off if global temperatures increase by another 2 degrees Celsius (https://www.ipcc.ch/2018/10/08/summary-for-policymakers-of-ipcc-special-report-on-global- warming-of-1-5c-approved-by-governments/).

The Problem

Coral bleaching, the loss of algal symbionts necessary for the survival of cnidarian reef organisms, is a disastrous environmental issue with global consequences. No single factor has been established as the cause of this catastrophe, but there are a multitude of suspects including increased greenhouse gas emissions and rising seawater temperatures[1].

The Solution

Although there is no absolute certainty about the cause of coral bleaching, increasing water temperatures have been directly correlated with subsequent bleaching events. And coral bleaching can be stimulated in aquarium corals by raising the water temperatures. There are some strains of corals and their symbiotic algae that prove somewhat more resistant to bleaching than others. So we proposed to identify those characteristics that might improve the ability to withstand bleaching and use a synthetic biology approach to modify the algae and restore them to corals.

The Plan

We are establishing both culturing and transformation protocols for these microalgae symbionts. We began by optimizing culturing techniques for Symbiodinium microadriaticum, Oxyrrhis marina (our model organism), and Dunaliella tertiolecta (the food source for O. marina).
To identify optimal algal growth conditions, we tested various factors such as growth media, light intensity, and temperature. We designed a codon optimized red fluorescent protein part that was cloned into a dinoflagellate-optimized expression plasmid (DinoIII)[2] for transformation into our model organism as a proof of concept. In parallel, we are also attempting to replicate the only known successful transformation of Symbiodinium using an Agrobacterium tumefacien co-culture carrying a binary vector, pCB302-GFP-MBD[3], and designing/executing various electroporation protocols. A genomic analysis of clade D Symbiodinium, a clade associated with higher resistance to bleaching but diminished coral growth, will identify target genes related to bleaching resistance for transformation into the growth-favorable clade C of Symbiodinium. The corals will then uptake the modified host algae, increasing their resistance to bleaching.
  • [1] Douglas (2003, April 4). Coral Bleaching--How and Why doi:10.1016/S0025-326X(03)00037-7/journal.
  • [2] Sprecher,B., Zhang,H. & Lin, S. (2019, April 9). Nuclear gene transformation in a dinoflagellate. doi: 10.1101/602821
  • [3] Ortiz-Matamoros, M.F., Islas-Flores, T., Voigt, B., Menzel, D., Baluška, F. & Villanueva, M.A. (2015, July 13). Heterologous DNA Uptake in Cultured Symbiodinium spp. Aided by Agrobacterium tumefaciens. doi:10.1371/journal. Pone.0132693
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    Tel: (+1) 404 413 5344

    E-mail: igemgsu@gmail.com

    Address: iGEM 50 Decatur St SE, Atlanta GA 30303