Difference between revisions of "Team:Cornell/Description"

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{{Cornell}}
 
 
<html>
 
<html>
 +
<head>
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<style>
  
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<div class="column full_size judges-will-not-evaluate">
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        /* hides "Team:Cornell" and iGEM logo */
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<h3>★  ALERT! </h3>
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        #top_title {
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<p>This page is used by the judges to evaluate your team for the <a href="https://2019.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2019.igem.org/Judging/Awards"> award listed below</a>. </p>
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            display: none;
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<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2019.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
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        }
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</div>
+
  
 +
        /* removes padding below footer */
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        #globalWrapper {
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            padding: 0;
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        }
  
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<div class="clear"></div>
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        #content {
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            padding: 0px;
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            width: 100% !important;
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            margin-top: 0px;
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            margin-left: 0px ;
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        }
  
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<div class="column full_size">
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        /* removes default styling for home banner tagline */
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<h1>Project Inspiration and Description </h1>
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        #HQ_page p {
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<h3>NEW: Bronze Medal Criterion #4</h3>
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            font-family: 'Open Sans', sans-serif;
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            font-size: 16px;
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            font-weight: 100;
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            color: #000;
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            padding-top: 0;
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            padding-bottom: 0;
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        }
  
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<p>Document how and why you chose your iGEM project on this page. Reference work outside or inside of iGEM that inspired your project, how you selected your project goal, and why you thought this project was a useful application of synthetic biology. Finally, provide a clear and concise description of what you plan on doing for your project.</p>
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        /* removes small extra margin at very bottom below footer */
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        p {
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            margin: 0;
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        }
  
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<p>To be eligible for this award, you must add clear documentation to this page and delete the alert box at the top of this page.</p>
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        /* removes bullets from Toolkit dropdown menu */
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        ul {
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            list-style-image: none;
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        }
  
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</div>
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      a {
 +
          color: #000;
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      }
  
 +
        /* Font Styling */
 +
        @import url('https://fonts.googleapis.com/css?family=Merriweather|Open+Sans|Raleway');
 +
        @font-face {
 +
            font-family: 'Futura';
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            src: url('../futura/futura\ medium\ bt.ttf');
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        }
  
 +
        body {
 +
            font-family: 'Open Sans', sans-serif;
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        }
  
−
<div class="column two_thirds_size">
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        .dropbtn, .dropdown-content {
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<h3>What should this page contain?</h3>
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            font-size: 16px;
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<ul>
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        }
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<li> A clear and concise description of your project.</li>
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<li>A detailed explanation of why your team chose to work on this particular project.</li>
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<li>References and sources to document your research.</li>
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<li>Use illustrations and other visual resources to explain your project.</li>
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</ul>
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</div>
+
  
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<div class="column third_size" >
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        .standard-page-banner > svg > text, .standard-page-content-title, .standard-page-side-bar-wrapper {
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<div class="highlight decoration_A_full">
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            font-family: 'Futura', sans-serif;
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<h3>Inspiration</h3>
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        }
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<p>See how other teams have described and presented their projects: </p>
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        /* End Font Styling */
  
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<ul>
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        html,
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<li><a href="https://2016.igem.org/Team:Imperial_College/Description">2016 Imperial College</a></li>
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        body {
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<li><a href="https://2016.igem.org/Team:Wageningen_UR/Description">2016 Wageningen UR</a></li>
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            width: 100%;
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<li><a href="https://2014.igem.org/Team:UC_Davis/Project_Overview"> 2014 UC Davis</a></li>
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            height: 100%;
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<li><a href="https://2014.igem.org/Team:SYSU-Software/Overview">2014 SYSU Software</a></li>
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            margin: 0;
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</ul>
+
            padding: 0;
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</div>
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            overflow-x: hidden;
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</div>
+
        }
 +
       
 +
        body {
 +
            background-size: 40px 40px;
 +
        }
 +
       
 +
        p {
 +
            color: #000;
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        }
 +
       
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        nav {
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            padding-top: 30px;
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            padding-bottom: 30px;
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            padding-right: 100px;
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            background-color: #a0e0bd;
 +
            height: 98px;
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        }
 +
       
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        .nav-bar-logo {
 +
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            margin-left: 80px;
 +
            margin-top: -5px;
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        }
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        .nav-bar-logo img {
 +
            width: 140px;
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        }
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        .banner-container {
 +
            display: flex;
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            flex-direction: row;
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            flex-wrap: wrap;
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            justify-content: center;
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        @media (max-width: 1050px) {
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            vertical-align: top;
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            display: inline-block;
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            float: right;
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        .dropdown ul {
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        .dropdown-content {
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            position: absolute;
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            color: #ffffff;
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            box-shadow: 0px 8px 16px 0px rgba(0, 0, 0, 0.2);
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            width: 630px;
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        .human-dropdown-content {
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        .outreach-dropdown-content {
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            left: -40px;
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        .team-dropdown-content {
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        .dropdown-content a {
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            color: #ffffff;
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            padding: 12px 16px;
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            text-decoration: none !important;
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            display: block;
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        }
 +
       
 +
        .wet-lab-list-title,
 +
        .doc-list-title,
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        .pd-list-title {
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            padding-top: 12px;
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            padding-left: 16px;
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            padding-bottom: 14px;
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text-decoration: ul;
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        .nav-second-col {
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            margin-left: 30px;
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        .nav-third-col {
 +
            margin-left: 30px;
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        }
 +
       
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        .dropbtn:hover,
 +
        .active-page {
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            color: #016C64;
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            transition-duration: 0.5s;
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        .dropdown-content a:hover {
 +
            color: #016C64;
 +
            background-color: #ffffff;
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        }
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 +
        .dropdown:hover .dropdown-content {
 +
            display: block;
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        }
 +
       
 +
        footer {
 +
            padding: 35px;
 +
            position: relative;
 +
            text-align: center;
 +
            background-color: #a0e0bd;
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 +
        .footer-wrapper {
 +
            margin: auto;
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            display: inline-block;
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        }
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        .icon-wrapper {
 +
            display: inline-block;
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            position: relative;
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            padding-right: 18px;
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            padding-left: 18px;
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            border-right: 0.5px solid white;
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        .icon-wrapper-last {
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            border-right: none;
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        .icon {
 +
            margin: 16px;
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        }
 +
       
 +
        .icon img {
 +
            height: 24px;
 +
        }
  
 +
    /*Start Styles for Standard Page*/
 +
    .standard-page-banner {
 +
        background-image: url(https://static.igem.org/mediawiki/2019/c/ce/T--Cornell--about-banner.jpeg);
 +
        background-size: cover;
 +
        fill: black;
 +
        font-size: 10px;
 +
    }
  
 +
    .standard-page-side-bar-content-wrapper {
 +
        padding: 5% 0;
 +
    }
  
−
<div class="column two_thirds_size" >
+
    .standard-page-side-bar>li>a {
−
<h3>Advice on writing your Project Description</h3>
+
        text-decoration: none;
 +
        color: #016C64;
 +
        font-size: 16px;
 +
    }
  
−
<p>
+
    .standard-page-side-bar {
−
We encourage you to put up a lot of information and content on your wiki, but we also encourage you to include summaries as much as possible. If you think of the sections in your project description as the sections in a publication, you should try to be concise, accurate, and unambiguous in your achievements.  
+
        list-style-type: none;
−
</p>
+
        padding-left: 15px;
 +
        padding-right: 15px;
 +
        vertical-align: middle;
 +
        margin: 0;
 +
    }
  
−
</div>
+
    .standard-page-side-bar>li {
 +
        margin-bottom: 15px;
 +
    }
  
−
<div class="column third_size">
+
    .standard-page-content-title {
−
<h3>References</h3>
+
        font-size: 24px;
−
<p>iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you thought about your project and what works inspired you.</p>
+
        color: #000 !important;
 +
        position: relative;
 +
    }
  
−
</div>
+
    .green-accent-line-left {
 +
        border: #a0e0bd solid 1px;
 +
        display: block;
 +
        float: left;
 +
        margin: 1em auto 1em auto;
 +
        width: 80px;
 +
    }
  
 +
    .standard-page-content-subheading {
 +
        font-size: 18px;
 +
        font-weight: 1;
 +
        color: #000;
 +
        padding-top: 40px;
 +
        padding-bottom: 0;
 +
    }
  
 +
    .standard-page-content-section {
 +
        margin-top: 40px;
 +
        margin-bottom: 40px;
 +
    }
  
 +
    /*End Style for Standard Page*/
 +
    /*Start Grid for Standard Page*/
  
 +
    nav {
 +
        grid-area: navbar;
 +
    }
  
 +
    .nav-bar-main-menu .dropdown:nth-child(5) .dropdown-contentx {
 +
        display: grid;
 +
        grid-template-columns: auto auto auto;
 +
    }
  
 +
    .nav-first-col {
 +
        display: inline-grid;
 +
    }
 +
 +
    .nav-second-col {
 +
        display: inline-grid;
 +
    }
 +
 +
    .nav-third-col {
 +
        display: inline-grid;
 +
    }
 +
 +
    .standard-page-wrapper {
 +
        display: grid;
 +
        grid-template-columns: auto;
 +
        grid-template-rows: 100px 550px auto 100px;
 +
        grid-template-areas: "navbar" "standardpagebanner" "standardpagesidebarcontent" "footer";
 +
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    .standard-page-banner {
 +
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    }
 +
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    .standard-page-side-bar-content-wrapper {
 +
        display: inline-grid;
 +
        grid-area: standardpagesidebarcontent;
 +
        grid-template-columns: 7.5% 20% 65% 7.5%;
 +
        grid-template-areas: ". standardpagesidebar standardpagecontent .";
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    }
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    .standard-page-side-bar-wrapper {
 +
        margin-top: 35px;
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        grid-area: standardpagesidebar;
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    .standard-page-content-wrapper {
 +
        grid-area: standardpagecontent;
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 +
    a.icon {
 +
        padding: 0 !important;
 +
    }
 +
 +
    /*End Grid for Standard Page*/
 +
 +
    </style>
 +
    <title>Team:Cornell - 2019.igem.org</title>
 +
    <!-- CSS -->
 +
    <link rel="stylesheet" type="text/css" href="https://2019.igem.org/Team:Cornell/styles?action=raw&ctype=text/css">
 +
    <link rel="stylesheet" type="text/css" href="https://2019.igem.org/Team:Cornell/grids?action=raw&ctype=text/css​">
 +
    <!-- JS -->
 +
    <script src="https://2019.igem.org/Team:Cornell/jquerymin?action=raw&ctype=text/javascript"></script>
 +
</head>
 +
<body>
 +
    <div class ="standard-page-wrapper">
 +
        <!------------------------ NAV BAR START ------------------------>
 +
        <nav>
 +
            <div class="nav-bar-wrapper">
 +
                <div class="nav-bar-logo">
 +
                        <a href="https://2019.igem.org/Team:Cornell"><img src="https://static.igem.org/mediawiki/2019/9/94/T--Cornell--Logo.png" alt="reHAB"></a>
 +
                </div>
 +
                <div class="nav-bar-main-menu">
 +
                    <div class="dropdown">
 +
                        <button class="dropbtn">TEAM</button>
 +
                        <div class="dropdown-content team-dropdown-content">
 +
                            <a href="https://2019.igem.org/Team:Cornell/Team">BIOS</a>
 +
                            <a href="https://2019.igem.org/Team:Cornell/Sponsors">SPONSORS</a>
 +
                            <a href="https://2019.igem.org/Team:Cornell/Attributions">ATTRIBUTIONS</a>
 +
                        </div>
 +
                    </div>
 +
                    <div class="dropdown">
 +
                        <button class="dropbtn">OUTREACH</button>
 +
                        <div class="dropdown-content outreach-dropdown-content">
 +
                            <a href="https://2019.igem.org/Team:Cornell/Public_Engagement">EDUCATION & ENGAGEMENT</a>
 +
                            <a href="https://2019.igem.org/Team:Cornell/Collaborations">COLLABORATIONS</a>
 +
                        </div>
 +
                    </div>
 +
                    <div class="dropdown">
 +
                        <button class="dropbtn">HUMAN PRACTICES</button>
 +
                        <div class="dropdown-content human-dropdown-content">
 +
                            <a href="https://2019.igem.org/Team:Cornell/Human_Practices">INTEGRATED PRACTICES</a>
 +
                            <a href="https://2019.igem.org/Team:Cornell/Policies">POLICIES</a>
 +
                            <a href="https://2019.igem.org/Team:Cornell/Entrepreneurship">ENTREPRENEURSHIP</a>
 +
                        </div>
 +
                    </div>
 +
                    <div class="dropdown">
 +
                        <button class="dropbtn"
 +
                            onclick="location.href='https://2019.igem.org/Team:Cornell/Model'">MODELING</button>
 +
                    </div>
 +
                    <div class="dropdown">
 +
                        <button class="dropbtn">TOOLKIT</button>
 +
                        <div class="dropdown-content toolkit-dropdown-content">
 +
                            <ul>
 +
                                <div class="nav-first-col">
 +
                                    <li class="wet-lab-list-title"><b>WET LAB</b></li>
 +
                                    <li><a href="https://2019.igem.org/Team:Cornell/Foundations">FOUNDATIONS</a></li>
 +
                                    <li><a href="https://2019.igem.org/Team:Cornell/Demonstrate">DEMONSTRATE</a></li>
 +
                                    <li><a href="https://2019.igem.org/Team:Cornell/Parts">PARTS</a></li>
 +
                                    <li><a href="https://2019.igem.org/Team:Cornell/BasicParts">BASIC PARTS</a></li>
 +
                                    <li><a href="https://2019.igem.org/Team:Cornell/CompositeParts">COMPOSITE PARTS</a></li>
 +
                                </div>
 +
                                <div class="nav-second-col">
 +
                                    <li class="pd-list-title"><b>PRODUCT DEVELOPMENT</b></li>
 +
                                    <li><a href="https://2019.igem.org/Team:Cornell/DesignProcess">DESIGN PROCESS</a></li>
 +
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                        Cornell iGEM is working to create a microcystin detection and remediation system to combat the toxins produced by cyanobacteria in harmful algal blooms (HABs). As a team, we take safety very seriously and a detailed description of our procedures can be found below.
 +
              Our protocols are guided by the risk matrix, as we try to both minimize the likelihood
 +
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              be found <a id="safety-hyperlink" href="https://2019.igem.org/File:T--Cornell--Safety2019_Spreadsheet.xls">here</a>.
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                        Cornell iGEM is working to create a microcystin detection and remediation system to combat harmful algal blooms (HABs). For the detection component, we intend to use RNA aptamers to identify the toxins. We will make an automated boat containing a sampler to obtain water samples and to test for microcystins. For remediation, we plan to use a bioreactor containing E. coli with the mlr cassette to degrade the toxins. The E. coli will be encapsulated in alginate beads, and the bioreactor will be an open system that allows water to flow through.
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                    <div class="standard-page-content-title"><div id="pageheading3">PROJECT INSPIRATION</div></div>
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                        Cornell University is located in Upstate New York near the Finger Lakes region where algal blooms are a common occurrence. However, our research taught us that some algal blooms are considered “harmful” due to the toxins released by the algae, which can prove detrimental to human health and marine life. During our brainstorming process, a few members of our team attended the Community Science Institute’s event, “Nutrients in the Watershed, Unusual Weather, and Harmful Algal Blooms: A Public Conversation” in Aurora, NY. At the event, we met with many researchers and community members who spoke about the impact that HABs has had on their communities, and we felt it would be a meaningful endeavor to pursue a potential solution using synthetic biology.</p>
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                    <div class="standard-page-content-title"><div id="pageheading4">REFERENCES</div></div>
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Foundation for Water Research. “Toxic Algal Blooms in Drinking Water Reservoirs.” TOXIC ALGAL BLOOMS IN DRINKING WATER RESERVOIRS, www.fwr.org/drnkwatr/algaltox.htm.<br><br>
 +
“Harmful Algal Blooms & Drinking Water Treatment.” EPA, Environmental Protection Agency, 17 May 2018, www.epa.gov/water-research/harmful-algal-blooms-drinking-water-treatment.<br><br>
 +
“Keeping the Water Flowing: Helping Water Treatment Facilities Handle Harmful Algal Blooms.” EPA, Environmental Protection Agency, 4 June 2018, www.epa.gov/sciencematters/keeping-water-flowing-helping-water-treatment-facilities-handle-harmful-algal-blooms.<br><br>
 +
“Nutrients in the Watershed, Unusual Weather, and Harmful Algal Blooms: A Public Conversation.” Community Science Institute, 15 Mar. 2019, www.communityscience.org/2019/03/15/nutrients-in-the-watershed-unusual-weather-harmful-algal-blooms-a-public-conversation/.<br><br></p>
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Latest revision as of 21:33, 21 October 2019

Team:Cornell - 2019.igem.org

About
PROJECT OVERVIEW

Cornell iGEM is working to create a microcystin detection and remediation system to combat the toxins produced by cyanobacteria in harmful algal blooms (HABs). As a team, we take safety very seriously and a detailed description of our procedures can be found below. Our protocols are guided by the risk matrix, as we try to both minimize the likelihood of an incident as well as the severity of an incident. Our completed safety form can be found here.

PROJECT DESCRIPTION

Cornell iGEM is working to create a microcystin detection and remediation system to combat harmful algal blooms (HABs). For the detection component, we intend to use RNA aptamers to identify the toxins. We will make an automated boat containing a sampler to obtain water samples and to test for microcystins. For remediation, we plan to use a bioreactor containing E. coli with the mlr cassette to degrade the toxins. The E. coli will be encapsulated in alginate beads, and the bioreactor will be an open system that allows water to flow through.

PROJECT INSPIRATION

Cornell University is located in Upstate New York near the Finger Lakes region where algal blooms are a common occurrence. However, our research taught us that some algal blooms are considered “harmful” due to the toxins released by the algae, which can prove detrimental to human health and marine life. During our brainstorming process, a few members of our team attended the Community Science Institute’s event, “Nutrients in the Watershed, Unusual Weather, and Harmful Algal Blooms: A Public Conversation” in Aurora, NY. At the event, we met with many researchers and community members who spoke about the impact that HABs has had on their communities, and we felt it would be a meaningful endeavor to pursue a potential solution using synthetic biology.

REFERENCES

Foundation for Water Research. “Toxic Algal Blooms in Drinking Water Reservoirs.” TOXIC ALGAL BLOOMS IN DRINKING WATER RESERVOIRS, www.fwr.org/drnkwatr/algaltox.htm.

“Harmful Algal Blooms & Drinking Water Treatment.” EPA, Environmental Protection Agency, 17 May 2018, www.epa.gov/water-research/harmful-algal-blooms-drinking-water-treatment.

“Keeping the Water Flowing: Helping Water Treatment Facilities Handle Harmful Algal Blooms.” EPA, Environmental Protection Agency, 4 June 2018, www.epa.gov/sciencematters/keeping-water-flowing-helping-water-treatment-facilities-handle-harmful-algal-blooms.

“Nutrients in the Watershed, Unusual Weather, and Harmful Algal Blooms: A Public Conversation.” Community Science Institute, 15 Mar. 2019, www.communityscience.org/2019/03/15/nutrients-in-the-watershed-unusual-weather-harmful-algal-blooms-a-public-conversation/.