Team:SEU/toolJS

var DNAspace=6;//| | | | var DNAwid=12; var DNAstep=2; var arrowLen=4; var arrowHeadLen=8; var arrowAngle=Math.PI/8; var DNAseperate=44; var Font="0px Arial"; var FontDescription="14px Arial"; var fontSpace=2; var Black=[0,0,0]; var reacArrowLen=40; var reacArrowHeadLen=6; var longDNAlen=20; var shortDNAlen=16; function draw() { var ctx = document.getElementById('canvas').getContext('2d'); var weightedNum=document.getElementById("number").value; // ctx.font = "18px Arial"; // ctx.fillText("Da",20,65); var longDNAlen=20; var shortDNAlen=10; ctx.lineWidth=1; var seqDict=drawNeuron(ctx,weightedNum,50,50); showSeq(seqDict,[10,10]); //arrowReac(ctx,200,50,[500,500]); } function showSeq(seqDict,[X0,Y0]){ var X=X0,Y=Y0;

   var seqs = document.getElementById("sequence");
   for(var i=0;i<seqDict[0].length;i++){
   	seqs.innerHTML=seqs.innerHTML+seqDict[0][i]+":
"

for(var j in seqDict[i+1]){ seqs.innerHTML = seqs.innerHTML + change(seqDict[i+1][j]) +"
"; } } } function clearCanvas(){ var c=document.getElementById('canvas'); var ctx=c.getContext('2d'); ctx. c=document.getElementById('seqCanvas'); ctx=c.getContext('2d'); ctx.clearRect(0,0,c.width,c.height); } function arrowReac(ctx,len,arrowReacLen,[x,y]){ ctx.strokeStyle='rgb('+Black[0]+','+Black[0]+','+Black[0]+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x+len,y); ctx.moveTo(x+len-arrowReacLen,y+arrowReacLen); ctx.lineTo(x+len,y); ctx.moveTo(x+len-arrowReacLen,y-arrowReacLen); ctx.lineTo(x+len,y); ctx.stroke(); } function revArrowReac(ctx,len,arrowReacLen,[x,y]){ ctx.strokeStyle='rgb('+Black[0]+','+Black[0]+','+Black[0]+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x+len,y); ctx.moveTo(x+len-arrowReacLen,y+arrowReacLen); ctx.lineTo(x+len,y); ctx.moveTo(x+len-arrowReacLen,y-arrowReacLen); ctx.lineTo(x+len,y); ctx.moveTo(x+arrowReacLen,y+arrowReacLen); ctx.lineTo(x,y); ctx.moveTo(x+arrowReacLen,y-arrowReacLen); ctx.lineTo(x,y); ctx.stroke(); } function horizontalLine(ctx,name,len,[x,y],[R,G,B]){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x+len,y); ctx.stroke(); ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x,y-fontSpace); }

function verticalLine(ctx,len,[x,y],[R,G,B]){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x,y+len); ctx.stroke(); }

function horizontalDashedLine(ctx,name,len,[x,y],[R,G,B],step){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); for(var i=0;i<=len-1;i+=2*step){ ctx.moveTo(x+i,y); ctx.lineTo(x+i+step,y); ctx.stroke(); } ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x,y-fontSpace); }

function up45RightLine(ctx,name,len,[x,y],[R,G,B]){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x+len,y-len); ctx.stroke(); ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x+len/2,y-fontSpace); }

function up45DashedRightLine(ctx,name,len,[x,y],[R,G,B],step){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); for(var i=0;i<=len-1;i+=2*step){ ctx.moveTo(x+i,y-i); ctx.lineTo(x+i+step,y-i-step); ctx.stroke(); } ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x+len/2,y-fontSpace); }

function up45LeftLine(ctx,name,len,[x,y],[R,G,B]){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x-len,y-len); ctx.stroke(); ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x-len/2,y-len/2-fontSpace); }

function up45DashedLeftLine(ctx,len,[x,y],[R,G,B],step){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); for(var i=0;i<=len-1;i+=2*step){ ctx.moveTo(x-i,y-i); ctx.lineTo(x-i-step,y-i-step); ctx.stroke(); } }

function down45LeftLine(ctx,len,[x,y],[R,G,B]){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x-len,y+len); ctx.stroke(); }

function down45DashedLeftLine(ctx,len,[x,y],[R,G,B],step){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); for(var i=0;i<=len-1;i+=2*step){ ctx.moveTo(x-i,y+i); ctx.lineTo(x-i-step,y+i+step); ctx.stroke(); } }

function arrowHorizontalRight(ctx,name,len,[x,y],[R,G,B],arrowLen,arrowAngle){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x+len,y); //right ctx.moveTo(x+len-Math.floor(arrowLen*Math.cos(arrowAngle)), y-Math.floor(arrowLen*Math.sin(arrowAngle))); ctx.lineTo(x+len,y); //left ctx.moveTo(x+len-Math.floor(arrowLen*Math.cos(arrowAngle)), y+Math.floor(arrowLen*Math.sin(arrowAngle))); ctx.lineTo(x+len,y); ctx.stroke(); ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x+len/2,y-fontSpace); }

function arrowHorizontalLeft(ctx,name,len,[x,y],[R,G,B],arrowLen,arrowAngle){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); //right ctx.moveTo(x+Math.floor(arrowLen*Math.cos(arrowAngle)), y-Math.floor(arrowLen*Math.sin(arrowAngle))); ctx.lineTo(x+len,y); //left ctx.moveTo(x+Math.floor(arrowLen*Math.cos(arrowAngle)), y+Math.floor(arrowLen*Math.sin(arrowAngle)));

ctx.lineTo(x+len,y); ctx.moveTo(x,y); ctx.lineTo(x+len,y);

ctx.stroke(); ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x+len/2,y-fontSpace); }

function arrowDashedHorizontalRight(ctx,name,len,[x,y],[R,G,B],arrowLen,arrowAngle,step){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); for(var i=0;i<=len-1;i+=2*step){ ctx.moveTo(x+i,y); ctx.lineTo(x+i+step,y); ctx.stroke(); } //right ctx.moveTo(x+len-Math.floor(arrowLen*Math.cos(arrowAngle)), y-Math.floor(arrowLen*Math.sin(arrowAngle))); ctx.lineTo(x+len,y); //left ctx.moveTo(x+len-Math.floor(arrowLen*Math.cos(arrowAngle)), y+Math.floor(arrowLen*Math.sin(arrowAngle))); ctx.lineTo(x+len,y); ctx.stroke(); ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x+len/2,y-fontSpace); }

function arrowDashedHorizontalLeft(ctx,name,len,[x,y],[R,G,B],arrowLen,arrowAngle,step){ ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); //right ctx.moveTo(x+Math.floor(arrowLen*Math.cos(arrowAngle)), y-Math.floor(arrowLen*Math.sin(arrowAngle))); ctx.lineTo(x,y); //left ctx.moveTo(x+Math.floor(arrowLen*Math.cos(arrowAngle)), y+Math.floor(arrowLen*Math.sin(arrowAngle))); ctx.lineTo(x,y); ctx.moveTo(x,y); for(var i=0;i<=len-1;i+=2*step){ ctx.moveTo(x+i,y); ctx.lineTo(x+i+step,y); ctx.stroke(); } ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x+len/2,y-fontSpace); }

function arrowUpRight45(ctx,lenInAxis,[x,y],[R,G,B],arrowLen,arrowAngle){//arrowAngle:theta,best:Math.PI/8 ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x+lenInAxis,y-lenInAxis); //right ctx.moveTo(x+lenInAxis-Math.floor(arrowLen*Math.cos(Math.PI/2-arrowAngle)), y-lenInAxis+Math.floor(arrowLen*Math.sin(Math.PI/2-arrowAngle))); ctx.lineTo(x+lenInAxis,y-lenInAxis); //left ctx.moveTo(x+lenInAxis-Math.floor(arrowLen*Math.sin(Math.PI/2-arrowAngle)), y-lenInAxis+Math.floor(arrowLen*Math.cos(Math.PI/2-arrowAngle))); ctx.lineTo(x+lenInAxis,y-lenInAxis); ctx.stroke(); }

function arrowDashedUpRight45(ctx,name,lenInAxis,[x,y],[R,G,B],arrowLen,arrowAngle,stepInAxis){//arrowAngle:theta ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); for(var i=0;i<=lenInAxis-1;i+=2*stepInAxis){ ctx.moveTo(x+i,y-i); ctx.lineTo(x+i+stepInAxis,y-i-stepInAxis); ctx.stroke(); } //right half arrow head ctx.moveTo(x+lenInAxis-Math.floor(arrowLen*Math.cos(Math.PI/2-arrowAngle)), y-lenInAxis+Math.floor(arrowLen*Math.sin(Math.PI/2-arrowAngle))); ctx.lineTo(x+lenInAxis,y-lenInAxis); //left half arrow head ctx.moveTo(x+lenInAxis-Math.floor(arrowLen*Math.sin(Math.PI/2-arrowAngle)), y-lenInAxis+Math.floor(arrowLen*Math.cos(Math.PI/2-arrowAngle))); ctx.lineTo(x+lenInAxis,y-lenInAxis); ctx.stroke(); ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(name,x+lenInAxis/2,y-fontSpace); }

function arrowDownLeft45(ctx,lenInAxis,[x,y],[R,G,B],arrowLen,arrowAngle){//arrowAngle:theta,best:Math.PI/8 ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); ctx.moveTo(x,y); ctx.lineTo(x-lenInAxis,y+lenInAxis); //right ctx.moveTo(x-lenInAxis+Math.floor(arrowLen*Math.cos(Math.PI/2-arrowAngle)), y+lenInAxis-Math.floor(arrowLen*Math.sin(Math.PI/2-arrowAngle))); ctx.lineTo(x-lenInAxis,y+lenInAxis); //left ctx.moveTo(x-lenInAxis+Math.floor(arrowLen*Math.sin(Math.PI/2-arrowAngle)), y+lenInAxis-Math.floor(arrowLen*Math.cos(Math.PI/2-arrowAngle))); ctx.lineTo(x-lenInAxis,y+lenInAxis); ctx.stroke(); }

function arrowDashedDownLeft45(ctx,name,lenInAxis,[x,y],[R,G,B],arrowLen,arrowAngle,stepInAxis){//arrowAngle:theta ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.fillStyle='rgb('+R+','+G+','+B+')'; ctx.beginPath(); for(var i=0;i<=lenInAxis-1;i+=2*stepInAxis){ ctx.moveTo(x-i,y+i); ctx.lineTo(x-i-stepInAxis,y+i+stepInAxis); ctx.stroke(); } //right ctx.moveTo(x-lenInAxis+Math.floor(arrowLen*Math.cos(Math.PI/2-arrowAngle)), y+lenInAxis-Math.floor(arrowLen*Math.sin(Math.PI/2-arrowAngle))); ctx.lineTo(x-lenInAxis,y+lenInAxis); //left ctx.moveTo(x-lenInAxis+Math.floor(arrowLen*Math.sin(Math.PI/2-arrowAngle)), y+lenInAxis-Math.floor(arrowLen*Math.cos(Math.PI/2-arrowAngle))); ctx.lineTo(x-lenInAxis,y+lenInAxis); ctx.stroke(); ctx.fillText(name,x-lenInAxis/2,y+lenInAxis/2+fontSpace); }




function drawDoubleDNAnoArrow(ctx,DNAname,DNAlen,[R,G,B],[posX,posY]){ horizontalLine(ctx,DNAname,DNAlen,[posX,posY],[R,G,B]); for(var i=DNAspace/2;i<=DNAlen;i+=DNAspace){ verticalLine(ctx,DNAwid,[posX+i,posY],[R,G,B]); } horizontalLine(ctx,' ',DNAlen,[posX,posY+DNAwid],[R,G,B]); }

function drawDoubleDNAwithArrowHorizontalRight(ctx,DNAname,DNAlen,[R,G,B],[posX,posY]){ arrowHorizontalRight(ctx,DNAname,DNAlen,[posX,posY],[R,G,B],arrowHeadLen,arrowAngle); for(var i=DNAspace/2;i<=DNAlen;i+=DNAspace){ verticalLine(ctx,DNAwid,[posX+i,posY],[R,G,B]); } horizontalLine(ctx,' ',DNAlen,[posX,posY+DNAwid],[R,G,B]); }

function drawDoubleDNAwithArrowHorizontalLeft(ctx,DNAname,DNAlen,[R,G,B],[posX,posY]){ horizontalLine(ctx,DNAname,DNAlen,[posX,posY+DNAwid],[R,G,B]); for(var i=DNAspace/2;i<=DNAlen;i+=DNAspace){ verticalLine(ctx,DNAwid,[posX+i,posY],[R,G,B]); } arrowHorizontalLeft(ctx,' ',DNAlen,[posX,posY-DNAwid],[R,G,B],arrowHeadLen,arrowAngle); }

function drawDoubleDNAwithArrow45(ctx,DNAname,DNAlen,[R,G,B],[posX,posY]){ horizontalLine(ctx,DNAlen,[posX,posY],[R,G,B]); for(var i=DNAspace/2;i<=DNAlen;i+=DNAspace){ verticalLine(ctx,DNAwid,[posX+i,posY],[R,G,B]); } horizontalLine(ctx,DNAlen,[posX,posY+DNAwid],[R,G,B]); arrow45(ctx,arrowLen,[posX+DNAlen,posY],[R,G,B],arrowHeadLen,arrowAngle); }

function drawDoubleDNADashednoArrow(ctx,DNAname,DNAlen,[R,G,B],[posX,posY]){ horizontalDashedLine(ctx,DNAname,DNAlen,[posX,posY],[R,G,B],DNAstep); for(var i=DNAspace/2;i<=DNAlen;i+=DNAspace){ verticalLine(ctx,DNAwid,[posX+i,posY],[R,G,B]); } horizontalDashedLine(ctx,' ',DNAlen,[posX,posY+DNAwid],[R,G,B],DNAstep); }

function drawDoubleDNADashedwithArrowHorizontalRight(ctx,DNAname,DNAlen,[R,G,B],[posX,posY]){ arrowDashedHorizontalRight(ctx,DNAname,DNAlen,[posX,posY],[R,G,B],arrowHeadLen,arrowAngle,DNAstep); for(var i=DNAspace/2;i<=DNAlen;i+=DNAspace){ verticalLine(ctx,DNAwid,[posX+i,posY],[R,G,B]); } horizontalDashedLine(ctx,' ',DNAlen,[posX,posY+DNAwid],[R,G,B],DNAstep); }

function drawDoubleDNADashedwithArrowHorizontalLeft(ctx,DNAname,DNAlen,[R,G,B],[posX,posY]){ horizontalDashedLine(ctx,DNAname,DNAlen,[posX,posY],[R,G,B],DNAstep); for(var i=DNAspace/2;i<=DNAlen;i+=DNAspace){ verticalLine(ctx,DNAwid,[posX+i,posY],[R,G,B]); } arrowDashedHorizontalLeft(ctx,' ',DNAlen,[posX,posY+DNAwid],[R,G,B],arrowHeadLen,arrowAngle,DNAstep); }

function drawDoubleDNADashedwithArrow45(ctx,DNAname,DNAlen,[R,G,B],[posX,posY]){ horizontalDashedLine(ctx,DNAlen,[posX,posY],[R,G,B],DNAstep); for(var i=DNAspace/2;i<=DNAlen;i+=DNAspace){ verticalLine(ctx,DNAwid,[posX+i,posY],[R,G,B]); } horizontalDashedLine(ctx,DNAlen,[posX,posY+DNAwid],[R,G,B],DNAstep); arrow45(ctx,arrowLen,[posX+DNAlen,posY],[R,G,B],arrowHeadLen,arrowAngle); }



//According to Fig. 11 function drawMul(ctx,aName,bName,cName,aColor,bColor,cColor,[X0,Y0],longDNAlen,shortDNAlen){//c=a*b //exponential factor var Black=[0,0,0]; var X=X0; var Y=Y0; var Da="D"+aName; var al=aName+"l"; var a=aName; var ar=aName+"r"; var Db="D"+bName; var bl=bName+"l"; var b=bName; var br=bName+"r"; var Dc="D"+cName; var cl=cName+"l"; var c=cName; var cr=cName+"r"; X=drawSig(ctx,aName,aColor,[X,Y],longDNAlen,shortDNAlen); //Wi arrowDashedDownLeft45(ctx,al+"*",shortDNAlen,[X,Y+DNAwid],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,ar,shortDNAlen,aColor,[X,Y]);

X=X+shortDNAlen+DNAseperate*2; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

//waste X=X+reacArrowLen+DNAseperate*2; up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,ar,shortDNAlen,aColor,[X,Y]); //waste X=X+shortDNAlen+DNAseperate; horizontalLine(ctx,a,longDNAlen,[X,Y],aColor); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,ar,shortDNAlen,[X,Y],aColor,arrowLen,arrowAngle,DNAstep); //Multiplication //Line 1 X=X0; Y=Y0+4*DNAseperate;

X=drawSig(ctx,aName,aColor,[X,Y],longDNAlen,shortDNAlen); //Li arrowDashedDownLeft45(ctx,al+"*",shortDNAlen,[X,Y+DNAwid],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,bl,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; Y=Y0+4*DNAseperate; revArrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate; //Hi up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; horizontalDashedLine(ctx,bl+"*",shortDNAlen,[X,Y+DNAwid],bColor,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black);

X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep); //Bi X=X+DNAseperate; Y=Y0+4*DNAseperate; horizontalLine(ctx,a,longDNAlen,[X,Y],aColor); X=X+longDNAlen; horizontalDashedLine(ctx,ar,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; arrowDashedHorizontalRight(ctx,bl,shortDNAlen,[X,Y],bColor,arrowHeadLen,arrowAngle,DNAstep);

//Line 2 X=X0; Y=Y0+8*DNAseperate; X=drawSig(ctx,bName,bColor,[X,Y],longDNAlen,shortDNAlen); //Hi up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; horizontalDashedLine(ctx,bl+"*",shortDNAlen,[X,Y+DNAwid],bColor,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; Y=Y0+8*DNAseperate; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate;

//waste up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; up45LeftLine(ctx,Db,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,bl,shortDNAlen,bColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,br,shortDNAlen,bColor,[X,Y]);

X=X+shortDNAlen+DNAseperate;

//Oi horizontalLine(ctx,b,longDNAlen,[X,Y],bColor); X=X+longDNAlen; horizontalDashedLine(ctx,br,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep);

//Line 3 X=X0; Y=Y0+12*DNAseperate; //Oi horizontalLine(ctx,b,longDNAlen,[X,Y],bColor); X=X+longDNAlen; horizontalDashedLine(ctx,br,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+DNAseperate; //Ti arrowDashedDownLeft45(ctx,br+"*",shortDNAlen,[X,Y+DNAwid],bColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Da,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,al,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,a,longDNAlen,[X,Y],aColor); arrowDashedUpRight45(ctx,ar,shortDNAlen,[X+longDNAlen,Y-longDNAlen],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Db,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,bl,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,b,longDNAlen,[X,Y],bColor); arrowDashedUpRight45(ctx,br,shortDNAlen,[X+longDNAlen,Y-longDNAlen],bColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Dc,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,cl,shortDNAlen,cColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,c,longDNAlen,[X,Y],cColor); arrowDashedUpRight45(ctx,cr,shortDNAlen,[X+longDNAlen,Y-longDNAlen],cColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]); //waste X=X+reacArrowLen+2*DNAseperate; up45LeftLine(ctx,b,longDNAlen,[X,Y],bColor); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,br,shortDNAlen,bColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Da,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,al,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Db,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,bl,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Dc,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,cl,shortDNAlen,cColor,[X,Y]);

X=X+shortDNAlen+DNAseperate; X=drawSig(ctx,aName,aColor,[X,Y],longDNAlen,shortDNAlen); X=drawSig(ctx,bName,bColor,[X,Y],longDNAlen,shortDNAlen); X=drawSig(ctx,cName,cColor,[X,Y],longDNAlen,shortDNAlen);

return Y; }

//ReLU weighted summation function drawMulReLU(ctx,aName,bName,cName,dName,aColor,bColor,cColor,dColor,[X0,Y0],longDNAlen,shortDNAlen){//c=a*b //exponential factor var Black=[0,0,0]; var X=X0; var Y=Y0; var Da="D"+aName; var al=aName+"l"; var a=aName; var ar=aName+"r"; var Db="D"+bName; var bl=bName+"l"; var b=bName; var br=bName+"r"; var Dc="D"+cName; var cl=cName+"l"; var c=cName; var cr=dName+"r"; var Dd="D"+dName; var dl=dName+"l"; var d=dName; var dr=dName+"r"; X=drawSig(ctx,aName,aColor,[X,Y],longDNAlen,shortDNAlen); //Wi arrowDashedDownLeft45(ctx,al+"*",shortDNAlen,[X,Y+DNAwid],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,ar,shortDNAlen,aColor,[X,Y]);

X=X+shortDNAlen+DNAseperate*2; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]); //waste X=X+shortDNAlen+DNAseperate*2; up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,ar,shortDNAlen,aColor,[X,Y]); //waste X=X+shortDNAlen+DNAseperate; horizontalLine(ctx,a,longDNAlen,[X,Y],aColor); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,ar,shortDNAlen,[X,Y],aColor,arrowLen,arrowAngle,DNAstep); //Multiplication //Line 1 X=X0; Y=Y0+4*DNAseperate;

X=drawSig(ctx,aName,aColor,[X,Y],longDNAlen,shortDNAlen); //Li arrowDashedDownLeft45(ctx,al+"*",shortDNAlen,[X,Y+DNAwid],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,bl,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,cl,shortDNAlen,[X,Y],cColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dd,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,dl,shortDNAlen,[X,Y],dColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; Y=Y0+4*DNAseperate; revArrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate; //Hi up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; horizontalDashedLine(ctx,bl+"*",shortDNAlen,[X,Y+DNAwid],bColor,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,cl,shortDNAlen,[X,Y],cColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dd,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,dl,shortDNAlen,[X,Y],dColor,arrowHeadLen,arrowAngle,DNAstep); //Bi X=X+DNAseperate; Y=Y0+4*DNAseperate; horizontalLine(ctx,a,longDNAlen,[X,Y],aColor); X=X+longDNAlen; horizontalDashedLine(ctx,ar,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; arrowDashedHorizontalRight(ctx,bl,shortDNAlen,[X,Y],bColor,arrowHeadLen,arrowAngle,DNAstep);

//Line 2 X=X0; Y=Y0+8*DNAseperate; X=drawSig(ctx,bName,bColor,[X,Y],longDNAlen,shortDNAlen); //Hi up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; horizontalDashedLine(ctx,bl+"*",shortDNAlen,[X,Y+DNAwid],bColor,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; up45DashedRightLine(ctx,cl,shortDNAlen,[X,Y],cColor,DNAstep); X=X+shortDNAlen; Y=Y-shortDNAlen; up45RightLine(ctx,Dd,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,dl,shortDNAlen,[X,Y],dColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; Y=Y0+8*DNAseperate; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate; //waste up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; up45LeftLine(ctx,Db,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,bl,shortDNAlen,bColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,br,shortDNAlen,bColor,[X,Y]);

X=X+shortDNAlen+DNAseperate;

//Oi horizontalLine(ctx,b,longDNAlen,[X,Y],bColor); X=X+longDNAlen; horizontalDashedLine(ctx,br,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,cl,shortDNAlen,[X,Y],cColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Dd,longDNAlen,[X,Y],Black); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,dl,shortDNAlen,[X,Y],dColor,arrowHeadLen,arrowAngle,DNAstep);

//Line 3 X=X0; Y=Y0+12*DNAseperate; //Oi horizontalLine(ctx,b,longDNAlen,[X,Y],bColor); X=X+longDNAlen; horizontalDashedLine(ctx,br,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Da,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,al,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,bl,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,cl,shortDNAlen,[X,Y],cColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Dd,longDNAlen,[X,Y],Black); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,dl,shortDNAlen,[X,Y],dColor,arrowHeadLen,arrowAngle,DNAstep);


X=X+DNAseperate; //Ti arrowDashedDownLeft45(ctx,br+"*",shortDNAlen,[X,Y+DNAwid],bColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Da,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,al,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,a,longDNAlen,[X,Y],aColor); arrowDashedUpRight45(ctx,ar,shortDNAlen,[X+longDNAlen,Y-longDNAlen],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Db,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,bl,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,b,longDNAlen,[X,Y],bColor); arrowDashedUpRight45(ctx,br,shortDNAlen,[X+longDNAlen,Y-longDNAlen],bColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Dc,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,cl,shortDNAlen,cColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,c,longDNAlen,[X,Y],cColor); arrowDashedUpRight45(ctx,cr,shortDNAlen,[X+longDNAlen,Y-longDNAlen],cColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Dd,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,dl,shortDNAlen,dColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,d,longDNAlen,[X,Y],dColor); arrowDashedUpRight45(ctx,dr,shortDNAlen,[X+longDNAlen,Y-longDNAlen],dColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; Y=Y0+12*DNAseperate; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate;

//waste up45LeftLine(ctx,b,longDNAlen,[X,Y],bColor); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,br,shortDNAlen,bColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Da,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,al,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Db,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,bl,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Dc,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,cl,shortDNAlen,cColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Dd,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,dl,shortDNAlen,dColor,[X,Y]);

X=X+shortDNAlen+DNAseperate; X=drawSig(ctx,aName,aColor,[X,Y],longDNAlen,shortDNAlen); X=drawSig(ctx,bName,bColor,[X,Y],longDNAlen,shortDNAlen); X=drawSig(ctx,cName,cColor,[X,Y],longDNAlen,shortDNAlen); X=drawSig(ctx,dName,dColor,[X,Y],longDNAlen,shortDNAlen);

return Y; } //according to Fig. 9 function drawAdd(ctx,aName,bName,aColor,bColor,[X0,Y0],longDNAlen,shortDNAlen){//a->b var Black=[0,0,0]; X=X0; Y=Y0; var Da="D"+aName; var al=aName+"l"; var a=aName; var ar=aName+"r"; var Db="D"+bName; var bl=bName+"l"; var b=bName; var br=bName+"r"; //Line 1 X=drawSig(ctx,aName,aColor,[X,Y],longDNAlen,shortDNAlen); //Gi arrowDashedDownLeft45(ctx,al+"*",shortDNAlen,[X,Y+DNAwid],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,bl,shortDNAlen,[X,Y],bColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; Y=Y0; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate;


//Oi Y=Y0; horizontalLine(ctx,a,longDNAlen,[X,Y],aColor); X=X+longDNAlen; horizontalDashedLine(ctx,ar,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,bl,shortDNAlen,[X,Y],bColor,arrowHeadLen,arrowAngle,DNAstep); //waste X=X+shortDNAlen+DNAseperate*2; up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,ar,shortDNAlen,aColor,[X,Y]);

//Line 2 X=X0; Y=Y0+4*DNAseperate; //Oi horizontalLine(ctx,a,longDNAlen,[X,Y],aColor); X=X+longDNAlen; horizontalDashedLine(ctx,ar,shortDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Db,longDNAlen,[X,Y],Black); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,bl,shortDNAlen,[X,Y],bColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+DNAseperate; //Ti arrowDashedDownLeft45(ctx,al+"*",shortDNAlen,[X,Y+DNAwid],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Db,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,bl,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,b,longDNAlen,[X,Y],bColor); arrowDashedUpRight45(ctx,br,shortDNAlen,[X+longDNAlen,Y-longDNAlen],bColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; Y=Y0+4*DNAseperate; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate;

//waste up45LeftLine(ctx,a,longDNAlen,[X,Y],aColor); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,ar,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Db,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,bl,shortDNAlen,bColor,[X,Y]);

X=X+shortDNAlen+DNAseperate; X=drawSig(ctx,bName,bColor,[X,Y],longDNAlen,shortDNAlen); return Y;

}

function drawSub(ctx,aName,bName,cName,aColor,bColor,cColor,[X0,Y0],longDNAlen,shortDNAlen){//a+b->c var Black=[0,0,0]; X=X0; Y=Y0; var Da="D"+aName; var al=aName+"l"; var a=aName; var ar=aName+"r"; var Db="D"+bName; var bl=bName+"l"; var b=bName; var br=bName+"r"; var Dc="D"+cName; var cl=cName+"l"; var c=cName; var cr=cName+"r"; //Line 1 X=drawSig(ctx,aName,aColor,[X,Y],longDNAlen,shortDNAlen); //Li arrowDashedDownLeft45(ctx,al+"*",shortDNAlen,[X,Y+DNAwid],aColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,bl,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep);

X=X+shortDNAlen+DNAseperate*2; Y=Y0; revArrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate; //Hi up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; horizontalDashedLine(ctx,bl+"*",shortDNAlen,[X,Y+DNAwid],bColor,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep); X=X+DNAseperate; Y=Y0; //Bi horizontalLine(ctx,a,longDNAlen,[X,Y],aColor); X=X+longDNAlen; horizontalDashedLine(ctx,ar,longDNAlen,[X,Y],aColor,DNAstep); X=X+shortDNAlen; arrowDashedHorizontalRight(ctx,bl,shortDNAlen,[X,Y],bColor,arrowHeadLen,arrowAngle,DNAstep);

X=X0; Y=Y0+4*DNAseperate; //Line 2 X=drawSig(ctx,bName,bColor,[X,Y],longDNAlen,shortDNAlen); //Hi up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; horizontalDashedLine(ctx,bl+"*",shortDNAlen,[X,Y+DNAwid],bColor,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,br,shortDNAlen,bColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; Y=Y-longDNAlen; arrowDashedUpRight45(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen+DNAseperate*2; Y=Y0+4*DNAseperate; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate; //waste up45LeftLine(ctx,Da,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,al,shortDNAlen,aColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,a,longDNAlen,aColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,ar,shortDNAlen,aColor,[X,Y]); X=X+shortDNAlen; up45LeftLine(ctx,Db,longDNAlen,[X,Y],Black); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,bl,shortDNAlen,bColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,b,longDNAlen,bColor,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,br,shortDNAlen,bColor,[X,Y]);

X=X+shortDNAlen+DNAseperate; //Oi horizontalLine(ctx,b,longDNAlen,[X,Y],bColor); X=X+longDNAlen; horizontalDashedLine(ctx,br,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep);

X=X0; Y=Y0+8*DNAseperate; //Line 3 //Oi horizontalLine(ctx,b,longDNAlen,[X,Y],bColor); X=X+longDNAlen; horizontalDashedLine(ctx,br,shortDNAlen,[X,Y],bColor,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,Dc,longDNAlen,[X,Y],Black); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,cl,shortDNAlen,[X,Y],cColor,arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen+DNAseperate; //Ti arrowDashedDownLeft45(ctx,br+"*",shortDNAlen,[X,Y+DNAwid],bColor,arrowHeadLen,arrowAngle,DNAstep); drawDoubleDNAnoArrow(ctx,Dc,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashednoArrow(ctx,cl,shortDNAlen,cColor,[X,Y]); X=X+shortDNAlen; up45RightLine(ctx,c,longDNAlen,[X,Y],cColor); arrowDashedUpRight45(ctx,cr,shortDNAlen,[X+longDNAlen,Y-longDNAlen],cColor,arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen+DNAseperate*2; Y=Y0+8*DNAseperate; arrowReac(ctx,reacArrowLen,reacArrowHeadLen,[X,Y]);

X=X+reacArrowLen+2*DNAseperate; //waste up45LeftLine(ctx,b,longDNAlen,[X,Y],bColor); drawDoubleDNADashedwithArrowHorizontalLeft(ctx,br,shortDNAlen,bColor,[X,Y],arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen; drawDoubleDNAnoArrow(ctx,Dc,longDNAlen,Black,[X,Y]); X=X+longDNAlen; drawDoubleDNADashedwithArrowHorizontalRight(ctx,cl,shortDNAlen,cColor,[X,Y]); X=X+shortDNAlen+DNAseperate; X=drawSig(ctx,cName,cColor,[X,Y],longDNAlen,shortDNAlen); return Y; }

function drawSig(ctx,name,color,[X,Y],longDNAlen,shortDNAlen){ var Black=[0,0,0]; ctx.font = Font; horizontalLine(ctx,"D"+name,longDNAlen,[X,Y],Black); X=X+longDNAlen; horizontalDashedLine(ctx,name+"l",shortDNAlen,[X,Y],color,DNAstep); X=X+shortDNAlen; horizontalLine(ctx,name,longDNAlen,[X,Y],color); X=X+longDNAlen; arrowDashedHorizontalRight(ctx,name+"r",shortDNAlen,[X,Y],color,arrowHeadLen,arrowAngle,DNAstep); X=X+shortDNAlen+DNAseperate; return X; }

function displayStr(ctx,str,[X,Y],[R,G,B]) { ctx.font = FontDescription; ctx.strokeStyle='rgb('+R+','+G+','+B+')'; ctx.fillText(str,X,Y); return Y+20; } function drawNeuron(ctx,weightNum,X0,Y0){ //name var d="d"; var xp="x+",xn="x-"; var y="y",yn="y-"; var waste="_w_"; var wi0p=[],wi0n=[]; var wip=[],win=[]; var inputp=[],inputn=[]; var inputpBkp=[],inputnBkp=[]; //color var dColor=[Math.random()*255,Math.random()*255,Math.random()*255]; var xpColor=[Math.random()*255,Math.random()*255,Math.random()*255]; var xnColor=[255-xpColor[0],255-xpColor[1],255-xpColor[2]]; var yColor=[Math.random()*255,Math.random()*255,Math.random()*255]; var ynColor=[255-yColor[0],255-yColor[1],255-yColor[2]]; var wasteColor=[0,0,0]; var inputpColor=[],inputnColor=[]; var inputpBkpColor=[],inputnBkpColor=[]; var wi0pColor=[],wi0nColor=[]; var wipColor=[],winColor=[]; var seqDict=[[]]; for(var i=1;i<=weightNum;i=i+1){ wi0p.push("w"+i+"0+"); wi0n.push("w"+i+"0-"); wip.push("w"+i+"+"); win.push("w"+i+"-"); wi0pColor.push([Math.random()*255,Math.random()*255,Math.random()*255]); wi0nColor.push([255-wi0pColor[i-1][0],255-wi0pColor[i-1][1],255-wi0pColor[i-1][2]]); wipColor.push([Math.random()*255,Math.random()*255,Math.random()*255]); winColor.push([255-wipColor[i-1][0],255-wipColor[i-1][1],255-wipColor[i-1][2]]);

inputp.push("i"+i+"+"); inputn.push("i"+i+"-"); inputpColor.push([Math.random()*255,Math.random()*255,Math.random()*255]); inputnColor.push([255-inputpColor[i-1][0],255-inputpColor[i-1][1],255-inputpColor[i-1][2]]);

inputpBkp.push("ib"+i+"+"); inputnBkp.push("ib"+i+"-"); inputpBkpColor.push([Math.random()*255,Math.random()*255,Math.random()*255]); inputnBkpColor.push([255-inputpBkpColor[i-1][0],255-inputpBkpColor[i-1][1],255-inputpBkpColor[i-1][2]]); } X=X0; Y=Y0; //Y=displayStr(ctx,"Weighted sum:",[X,Y],Black); X=X0; //weighted sum for(var i=1;i<=weightNum;i=i+1){ Y=drawMulReLU(ctx,inputpBkp[i-1],wip[i-1],xp,y,inputpBkpColor[i-1],wipColor[i-1],xpColor,yColor,[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; Y=drawMulReLU(ctx,inputnBkp[i-1],wip[i-1],xn,yn,inputnBkpColor[i-1],wipColor[i-1],xnColor,ynColor,[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; Y=drawMulReLU(ctx,inputpBkp[i-1],win[i-1],xn,yn,inputpBkpColor[i-1],winColor[i-1],xnColor,ynColor,[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; Y=drawMulReLU(ctx,inputnBkp[i-1],win[i-1],xp,y,inputnBkpColor[i-1],winColor[i-1],xpColor,yColor,[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; } for(var i=1;i<=weightNum;i=i+1){ seqDict=multiplicationReLU(seqDict,inputpBkp[i-1],wip[i-1],xp,y); seqDict=multiplicationReLU(seqDict,inputnBkp[i-1],wip[i-1],xn,yn); seqDict=multiplicationReLU(seqDict,inputpBkp[i-1],win[i-1],xn,yn); seqDict=multiplicationReLU(seqDict,inputnBkp[i-1],win[i-1],xp,y); } //x^+ + x^- -> \phi //Y=displayStr(ctx,"x+ + x- -> waste",[X,Y],Black); X=X0; Y=drawSub(ctx,xp,xn,waste,xpColor,xnColor,wasteColor,[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; seqDict=subtraction(seqDict,xp,xn,waste); X=X0; //y + y^- -> \phi //Y=displayStr(ctx,"y + y- -> waste",[X,Y],Black); X=X0; Y=drawSub(ctx,y,yn,waste,yColor,ynColor,wasteColor,[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; seqDict=subtraction(seqDict,y,yn,waste); X=X0;

//backpropagation for(var i=1;i<=weightNum;i=i+1){ Y=drawMul(ctx,xp,inputp[i-1],wi0n[i-1],xpColor,inputpColor[i-1],wi0nColor[i-1],[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; Y=drawMul(ctx,xp,inputn[i-1],wi0n[i-1],xpColor,inputnColor[i-1],wi0pColor[i-1],[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; } for(var i=1;i<=weightNum;i=i+1){ seqDict=multiplication(seqDict,xp,inputp[i-1],wi0n[i-1]); seqDict=multiplication(seqDict,xp,inputn[i-1],wi0n[i-1]); }

//wi0p->wip, wi0n->win, wip + win -> \phi for(var i=1;i<=weightNum;i=i+1){ Y=drawAdd(ctx,wi0p[i-1],wip[i-1],wi0pColor[i-1],wipColor[i-1],[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; Y=drawAdd(ctx,wi0n[i-1],win[i-1],wi0nColor[i-1],winColor[i-1],[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; Y=drawSub(ctx,wip[i-1],win[i-1],waste,wipColor[i-1],winColor[i-1],wasteColor,[X,Y],longDNAlen,shortDNAlen)+4*DNAseperate; X=X0; } for(var i=1;i<=weightNum;i=i+1){ seqDict=add(seqDict,wi0p[i-1],wip[i-1],waste); seqDict=add(seqDict,wi0n[i-1],win[i-1],waste); seqDict=add(seqDict,wip[i-1],win[i-1],waste); } return seqDict; } ///////////////////////////////sequence design////////////////////////////////////////////////////// function zeros(num){ var z=[]; for (var i = 0; i < num; i++) { z.push(0); } return z; }

function change(a){ var chain=; for(var i=0;i<a.length;i++){ if(a[i]==0) chain+=; if(a[i]==1) chain+='A'; if(a[i]==2) chain+='T'; if(a[i]==3) chain+='C'; if(a[i]==4) chain+='G'; } return chain; }

function check(a,b){ var i; var Original1=[]; n=a.length; if(b==1){ for(i=3;i<n-3;i++){ if(a[i]==1 && a[i-1]==1 && a[i-2]==1 && a[i-3]==1) a[i]=randsrc([2,3],[0.5,0.5]); if(a[i]==2 && a[i-1]==2 && a[i-2]==2 && a[i-3]==2) a[i]=randsrc([1,3],[0.5,0.5]); if(a[i]==3 && a[i-1]==3 && a[i-2]==3) a[i]=randsrc([1,2],[0.5,0.5]); } if(a[n-5]==1 && a[n-4]==1 && a[n-3]==1) a[n-4]=randsrc([2,3],[0.5,0.5]); } if(b==2){ for(i=2;i<n-1;i++){ if(i==2){ if(a[i]==3 && a[i-1]==3 && a[i-2]==3) a[i]=randsrc([1,2],[0.5,0.5]); } if (i>2){ if(a[i]==1 && a[i-1]==1 && a[i-2]==1 && a[i-3]==1) a[i]=randsrc([2,3],[0.5,0.5]); if(a[i]==2 && a[i-1]==2 && a[i-2]==2 && a[i-3]==2) a[i]=randsrc([1,3],[0.5,0.5]); if(a[i]==3 && a[i-1]==3 && a[i-2]==3) a[i]=randsrc([1,2],[0.5,0.5]); } } } for(i=0;i<n;i++) Original1.push(a[i]); return Original1; }


function creatComplementary(Original0){ var Complementary0=[]; for(var i=0;i<Original0.length;i++){ if(Original0[i]==1)

       	Complementary0.push(2);

if(Original0[i]==2) Complementary0.push(1); if(Original0[i]==3) Complementary0.push(4); } return Complementary0; }


function randsrc(entry,prob){ var r=Math.random(); var totalP=prob[0]; var i; for(i=1;i<entry.length;i++){ if(r<totalP) return entry[i-1]; totalP+=prob[i]; } return entry[i]; }

function creatlongchain(a){ var longchain0=[],longchain0_=[]; var i; for(i=0;i<a;i++) longchain0.push(randsrc([1,2,3],[0.15,0.15,0.7])); longchain0[0]=1; longchain0[1]=3; longchain0[a-2]=1; longchain0[a-1]=3; longchain0=check(longchain0,1); longchain0_=creatComplementary(longchain0); return [longchain0,longchain0_]; }

function creatshortchain(){ var core=[],t=randsrc([0,1,2],[1/3,1/3,1/3]),clamp=[1,3]; var shortchain_l=[0,0,0,0,0],shortchain_l_=[0,0,0,0,0],shortchain_r=[0,0,0,0,0],shortchain_r_=[0,0,0,0,0]; var i; for(i=0;i<3;i++) core.push(randsrc([1,2],[0.5,0.5])); core[t]=3; shortchain_l[0]=clamp[0]; shortchain_l[1]=clamp[1]; shortchain_l[2]=core[0]; shortchain_l[3]=core[1]; shortchain_l[4]=core[2];

shortchain_r[0]=core[0]; shortchain_r[1]=core[1]; shortchain_r[2]=core[2]; shortchain_r[3]=clamp[0]; shortchain_r[4]=clamp[1];

shortchain_l_=creatComplementary(shortchain_l); shortchain_r_=creatComplementary(shortchain_r); return [shortchain_l,shortchain_l_,shortchain_r,shortchain_r_]; }

function add(dict,aName,bName,cName){//dict:[[<species name>s],[Da,al,a,ar,Da*,al*,a*,ar*],[...],...] var Da,Da_,Db,Db_,Dc,Dc_,a,a_,b,b_,c,c_;//long chain var al,al_,ar,ar_,bl,bl_,br,br_,cl,cl_,cr,cr_;//short chain [Da,Da_]=creatlongchain(15); [Db,Db_]=creatlongchain(15); [Dc,Dc_]=creatlongchain(15); [a,a_]=creatlongchain(15); [b,b_]=creatlongchain(15); [c,c_]=creatlongchain(15); [al,al_,ar,ar_]=creatshortchain(); [bl,bl_,br,br_]=creatshortchain(); [cl,cl_,cr,cr_]=creatshortchain(); if(!(aName in dict[0])){ dict[0].push(aName); dict.push([Da,al,a,ar,Da_,al_,a_,ar_]); } if(!(bName in dict[0])){ dict[0].push(bName); dict.push([Db,bl,b,br,Db_,bl_,b_,br_]); } if(!(cName in dict[0])){ dict[0].push(cName); dict.push([Dc,cl,c,cr,Dc_,cl_,c_,cr_]); }

/////////////////////////////////////////////////////// var ai=[Da,0,al,0,a,0,ar]; var Gi_up=zeros(al.length).concat([0,a,0,ar,0,Db,0,bl,0,Dc,0,cl]);

   var Gi_down=[al_,0,a_,0,ar_,0].concat(zeros(Db.length+bl.length+Dc.length+cl.length),[0,0,0]);

var Oi=[a,0,ar,0,Db,0,bl,0,Dc,0,cl]; var waste1_up=[Da,0,al,0,a,0,ar];

   var waste1_down=zeros(Da.length).concat[0,al_,0,a_,0,ar_];

var waste2_up=[a,0,ar,0,Db,0,bl,0,Dc,0,cl];

   var waste2_down=zeros(a.length).concat[0,al_,0,Db_,0,bl_,0,Dc_,0,cl_];

var bi=[Db,0,bl,0,b,0,br]; var ci=[Dc,0,cl,0,c,0,cr]; var Ti1=[Db,0,bl,0,b,0,br]; var Ti2=[Dc,0,cl,0,c,0,cr]; var Ti3=[al_,0,Db_,0,bl_,0,Dc_,0,cl_]; return dict; }

function multiplication(dict,aName,bName,cName){ var Da,Da_,Db,Db_,Dc,Dc_,a,a_,b,b_,c,c_;//long chain var al,al_,ar,ar_,bl,bl_,br,br_,cl,cl_,cr,cr_;//short chain [Da,Da_]=creatlongchain(15); [Db,Db_]=creatlongchain(15); [Dc,Dc_]=creatlongchain(15); [a,a_]=creatlongchain(15); [b,b_]=creatlongchain(15); [c,c_]=creatlongchain(15); [al,al_,ar,ar_]=creatshortchain(); [bl,bl_,br,br_]=creatshortchain(); [cl,cl_,cr,cr_]=creatshortchain(); if(!(aName in dict[0])){ dict[0].push(aName); dict.push([Da,al,a,ar,Da_,al_,a_,ar_]); } if(!(bName in dict[0])){ dict[0].push(bName); dict.push([Db,bl,b,br,Db_,bl_,b_,br_]); } if(!(cName in dict[0])){ dict[0].push(cName); dict.push([Dc,cl,c,cr,Dc_,cl_,c_,cr_]); } ///////////////////////////////////////////////////////// var ai=[Da,0,al,0,a,0,ar]; var Li_up=zeros(al.length).concat([0,a,0,ar,0,bl,0,b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl]);

   var Li_down=[al_,0,a_,0,ar_,0,bl_,0,b_,0,br_].concat(zeros(Da.length+al.length+Db.length+bl.length+Dc.length+cl.length),[0,0,0,0,0,0]);

var Hi_up=[Da,0,al,0,a,0,ar,0].concat([zeros(bl_.length)],[0,b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl]); var Hi_down=zeros(Da.length).concat([0,al_,0,a_,0,ar_,0,bl_,0,b_,0,br_],zeros(Da.length+al.length+Db.length+bl.length+Dc.length+cl.length),[0,0,0,0,0,0]);

var Bi=[a,0,ar,0,bl]; var bi=[Db,0,bl,0,b,0,br]; var waste11=[Da,0,al,0,a,0,ar]; var waste12=[Db,0,bl,0,b,0,br]; var waste13=[al_,0,a_,0,ar_,0,bl_,0,b_,0,br_]; var Oi=[b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl]; var Ti1=[Da,0,al,0,a,0,ar]; var Ti2=[Db,0,bl,0,b,0,br]; var Ti3=[Dc,0,cl,0,b,0,br]; var Ti4=[br_,0,Da_,0,al_,0,Db_,0,bl_,0,Dc_,0,cl_]; var waste2_up=[b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl]; var waste2_down=zeros(b.length).concat([0,br_,0,Da_,0,al_,0,Db_,0,bl_,0,Dc_,0,cl_]); var ci=[Dc,0,cl,0,c,0,cr]; return dict; }

function subtraction(dict,aName,bName,cName){ var Da,Da_,Db,Db_,Dc,Dc_,a,a_,b,b_,c,c_;//long chain var al,al_,ar,ar_,bl,bl_,br,br_,cl,cl_,cr,cr_;//short chain [Da,Da_]=creatlongchain(15); [Db,Db_]=creatlongchain(15); [Dc,Dc_]=creatlongchain(15); [a,a_]=creatlongchain(15); [b,b_]=creatlongchain(15); [c,c_]=creatlongchain(15); [al,al_,ar,ar_]=creatshortchain(); [bl,bl_,br,br_]=creatshortchain(); [cl,cl_,cr,cr_]=creatshortchain(); if(!(aName in dict[0])){ dict[0].push(aName); dict.push([Da,al,a,ar,Da_,al_,a_,ar_]); } if(!(bName in dict[0])){ dict[0].push(bName); dict.push([Db,bl,b,br,Db_,bl_,b_,br_]); } if(!(cName in dict[0])){ dict[0].push(cName); dict.push([Dc,cl,c,cr,Dc_,cl_,c_,cr_]); } ///////////////////////////////////////////////////////// var ai=[Da,0,al,0,a,0,ar]; var Li_up=zeros(al_.length).concat([0,a,0,ar,0,bl,0,b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl]);

   var Li_down=[al_,0,a_,0,ar_,0,bl_,0,b_,0,br_].concat(zeros(Dc.length+cl.length),[0,0]);

var Hi_up=[Da,0,al,0,a,0,ar,0].concat([zeros(bl_.length)],[0,b,0,br,0,Dc,0,cl]); var Hi_down=zeros(Da.length).concat([0,al_,0,a_,0,ar_,0,bl_,0,b_,0,br_,0],zeros(Dc.length+cl.length),[0]); var Bi=[a,0,ar,0,bl]; var bi=[Db,0,bl,0,b,0,br]; var waste11=[Da,0,al,0,a,0,ar]; var waste12=[Db,0,bl,0,b,0,br]; var waste13=[al_,0,a_,0,ar_,0,bl_,0,b_,0,br_]; var Oi=[b,0,br,0,Dc,0,cl]; var Ti_up=zeros(br_.length).concat([0,Dc,0,cl,0,c,0,cr]); var Ti_down=[br_,0,Dc_,0,cl_,0].concat(zeros(c.length+cr.length),[0]); var waste2_up=[b,0,br,0,Dc,0,cl]; var waste2_down=zeros(b.length).concat([0,br_,0,Dc_,0,cl_]); var ci=[Dc,0,cl,0,c,0,cr]; return dict; }

function multiplicationReLU(dict,aName,bName,cName,dName){ var Da,Da_,Db,Db_,Dc,Dc_,Dd,Dd_,a,a_,b,b_,c,c_,d,d_;//long chain var al,al_,ar,ar_,bl,bl_,br,br_,cl,cl_,cr,cr_,dl,dl_,dr,dr_;//short chain [Da,Da_]=creatlongchain(15); [Db,Db_]=creatlongchain(15); [Dc,Dc_]=creatlongchain(15); [Dd,Dd_]=creatlongchain(15); [a,a_]=creatlongchain(15); [b,b_]=creatlongchain(15); [c,c_]=creatlongchain(15); [d,d_]=creatlongchain(15); [al,al_,ar,ar_]=creatshortchain(); [bl,bl_,br,br_]=creatshortchain(); [cl,cl_,cr,cr_]=creatshortchain(); [dl,dl_,dr,dr_]=creatshortchain(); if(!(aName in dict[0])){ dict[0].push(aName); dict.push([Da,al,a,ar,Da_,al_,a_,ar_]); } if(!(bName in dict[0])){ dict[0].push(bName); dict.push([Db,bl,b,br,Db_,bl_,b_,br_]); } if(!(cName in dict[0])){ dict[0].push(cName); dict.push([Dc,cl,c,cr,Dc_,cl_,c_,cr_]); } if(!(dName in dict[0])){ dict[0].push(dName); dict.push([Dd,dl,d,dr,Dd_,dl_,d_,dr_]); } ///////////////////////////////////////////////////////// var ai=[Da,0,al,0,a,0,ar]; var Li_up=zeros(al.length).concat([0,a,0,ar,0,bl,0,b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl,0,Dd,0,dl]);

   var Li_down=[al_,0,a_,0,ar_,0,bl_,0,b_,0,br_].concat(zeros(Da.length+al.length+Db.length+bl.length+Dc.length+cl.length+Dd.length+dl.length),[0,0,0,0,0,0,0,0]);

var Hi_up=[Da,0,al,0,a,0,ar,0].concat([zeros(bl_.length)],[0,b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl,0,Dd,0,dl]); var Hi_down=zeros(Da.length).concat([0,al_,0,a_,0,ar_,0,bl_,0,b_,0,br_],zeros(Da.length+al.length+Da.length+al.length+Dc.length+cl.length+Dd.length+dl.length),[0,0,0,0,0,0,0,0]); var Bi=[a,0,ar,0,bl]; var bi=[Db,0,bl,0,b,0,br]; var waste11=[Da,0,al,0,a,0,ar]; var waste12=[Db,0,bl,0,b,0,br]; var waste13=[al_,0,a_,0,ar_,0,bl_,0,b_,0,br_]; var Oi=[b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl,0,Dd,0,dl]; var Ti1=[Da,0,al,0,a,0,ar]; var Ti2=[Db,0,bl,0,b,0,br]; var Ti3=[Dc,0,cl,0,c,0,cr]; var Ti4=[Dd,0,dl,0,d,0,dr]; var Ti5=[br_,0,Da_,0,al_,0,Db_,0,bl_,0,Dc_,0,cl_,0,Dd_,0,dl_]; var waste2_up=[b,0,br,0,Da,0,al,0,Db,0,bl,0,Dc,0,cl,0,Dd,0,dl]; var waste2_down=zeros(b.length).concat([0,br_,0,Da_,0,al_,0,Db_,0,bl_,0,Dc_,0,cl_,0,Dd_,0,dl_]); var ci=[Dc,0,cl,0,c,0,cr]; var di=[Dd,0,dl,0,d,0,dr]; return dict; }