Team:ZJUT-China/Description










    Brief introduction


    This year, our team focus on the degradation of formaldehyde using E. coli. Our genetically engineered bacteria contain three parts: the degradation device、the indication device and the photolysis device. The degradation device acting as the core part which turns formaldehyde into carbon dioxide with several protein. At the same time, the indication device shows users whether the concentration of formaldehyde is safe for human health. When the concentration is higher than a threshold value, the medium gives a blue color, otherwise it appears orange. In consideration of biosafety, we integrate a photolysis system which expresses lysin protein when exposed under blue light, thus our HCHO-scavenger works in the dark. The lysed bacteria can be recycled in the end.


    In order to solve the serious problems caused by formaldehyde, our human practices not only carried out basic activities such as questionnaire survey, enterprise interviews, research and publicity, but also designed experiments, which promoted the working process of the experimental group this year. Through our preliminary investigation and experiment, the indicator group and the optical control group in our experimental circuit are produced. Our primary school demonstration PPT is lively and interesting. The demonstration add modern flash function, bring a fresh experience to the public, and let them know our project and iGEM more interestingly. In particular, we hand-painted a set of commentary project line poker cards, and produced a simple and interesting interactive video, so that you can more intuitively experience our project, understand the meaning of iGEM.


    Our equipment is equipped with a subsidiary structure of a gas concentrator, which can separate bacteria from the external environment. By using the gas concentrator, not only the formaldehyde in the air can be enriched, but also the change of ventilation can be observed. With the change of formaldehyde concentration, the color of the medium changed, which can be seen in the transparent concentrator. We also add filters on both sides of the bacteria container, so that the bacteria will not enter the concentrator or or directly contact with the external environment.





    Inspiration


    Through the investigation of human practices, such as investigation data, interviews, we found that the formaldehyde problem has led to very serious situations, such as leukemia, cancer. At present, the products on the market are not enough to solve the problem of formaldehyde. As a student majoring in biology, we urgently want to use synthetic biology to solve the problem of excessive formaldehyde in the environment, so that people can have a safer living environment.




    References

    1. Alpdagtas S, Yucel S, Kapkac HA, Liu S, Binay B. Discovery of an acidic, thermostable and highly NADP(+) dependent formate dehydrogenase from Lactobacillus buchneri NRRL B-30929. Biotechnol Lett. 2018;40(7):1135-47.
    2. Bateman R, Rauh D, Shokat KM. Glutathione traps formaldehyde by formation of a bicyclo[4.4.1]undecane adduct. Org Biomol Chem. 2007;5(20):3363-7.
    3. Davies HG, Bowman C, Luby SP. Cholera – management and prevention. Journal of Infection. 2017;74:S66-S73.
    4. Garg N, Manchanda G, Kumar A. Bacterial quorum sensing: circuits and applications. Antonie Van Leeuwenhoek. 2014;105(2):289-305.
    5. Goenrich M, Bartoschek S, Hagemeier CH, Griesinger C, Vorholt JA. A glutathione-dependent formaldehyde-activating enzyme (Gfa) from Paracoccus denitrificans detected and purified via two-dimensional proton exchange NMR spectroscopy. J Biol Chem. 2002;277(5):3069-72.
    6. Gonzalez CF, Proudfoot M, Brown G, Korniyenko Y, Mori H, Savchenko AV, et al. Molecular basis of formaldehyde detoxification. Characterization of two S-formylglutathione hydrolases from Escherichia coli, FrmB and YeiG. J Biol Chem. 2006;281(20):14514-22.
    7. Gutheil WG, Kasimoglu E, Nicholson PC. Induction of Glutathione-Dependent Formaldehyde Dehydrogenase Activity in Escherichia coli and Hemophilus influenza. Biochemical and Biophysical Research Communications. 1997;238:693-6.
    8. HARMS N, RAS J, REIJNDERS WNM, SPANNING RJMV, STOUTHAMER AH. S-Formylglutathione Hydrolase of Paracoccus denitrificans Is Homologous to Human Esterase D: a Universal Pathway for Formaldehyde Detoxification? American Society for Microbiology. 1996;178(21):6296-9.
    9. Hopkinson RJ, Barlow PS, Schofield CJ, Claridge TD. Studies on the reaction of glutathione and formaldehyde using NMR. Org Biomol Chem. 2010;8(21):4915-20.
    10. Hopkinson RJ, Leung IK, Smart TJ, Rose NR, Henry L, Claridge TD, et al. Studies on the Glutathione-Dependent Formaldehyde-Activating Enzyme from Paracoccus denitrificans. PLoS One. 2015;10(12):e0145085.
    11. Lessmeier L, Hoefener M, Wendisch VF. Formaldehyde degradation in Corynebacterium glutamicum involves acetaldehyde dehydrogenase and mycothiol-dependent formaldehyde dehydrogenase. Microbiology. 2013;159(Pt 12):2651-62.
    12. Shao Y, Li J, Wang Y, Yi F, Zhang Y, Cui P, et al. Comparative genomics and transcriptomics insights into the C1 metabolic model of a formaldehyde-degrading strain Methylobacterium sp. XJLW. Mol Omics. 2019;15(2):138-49.
    13. Yonemitsu H, Kikuchi Y. Biodegradation of high concentrations of formaldehyde using Escherichia coli expressing the formaldehyde dismutase gene of Methylobacterium sp. FD1. Biosci Biotechnol Biochem. 2018;82(1):49-56.
    14. Osman, D., Piergentili, C., Chen, J., Sayer, L. N., Uson, I., Huggins, T. G., Robinson, N. J., and Pohl, E. (2016) The Effectors and Sensory Sites of Formaldehyde-Responsive Regulator FrmR and Metal-Sensing Variant. [J]. Biol. Chem. 291, 19502-19516
    15. Josefine Liljeruhm, Saskia K. Funk, Sandra Tietscher, Anders D. Edlund, (2018) Engineering a palette of eukaryotic chromoproteins for bacterial synthetic biology. [J]. Biological Engineering (2018) 12:8
    16. Vladislav V Verkhusha, Konstantin A Lukyanov , (2004) The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins. [J]. Nature Biotechnology (2004), 289-296
    17. Jesus Fernandez-Rodriguez, Felix Moser, Miryoung Song, Christopher A Voigt , (2017) Engineering RGB color vision into Escherichia coli. [J]. Biol. Chem. 13,706-710
    18. Geyi Wang, Xin Lu, Yisha Zhu, Wei Zhang, Jiahui Liu, Yankang Wu, Liyang Yu, Dongchang Sun, Feng Cheng (2018) A light-controlled cell lysis system in bacteria. Journal of Industrial Microbiology & Biotechnology
    19. Hongping Wei, Hang Yang, Junping Yu (2015) A Kind of Lyase from Endolysis Escherichia coli and Its Application CN 104762285









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